mRNA_S-dermatodea_contig11082.706.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11082.706.1
Unique NamemRNA_S-dermatodea_contig11082.706.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11082.706.1 vs. uniprot
Match: A0A6H5KF78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF78_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.190e-5
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  388 ERFSYTNGA-YAGPEASSQTSRSLADFDRAQREIEAKLKAL 507
            +R+ YTNGA Y  PEASSQTSRSL DFDRAQREI  K+K L
Sbjct: 1663 DRYGYTNGASYGSPEASSQTSRSLEDFDRAQREIAEKMKNL 1703
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BLAST of mRNA_S-dermatodea_contig11082.706.1 vs. uniprot
Match: D8LNB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB8_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.170e-5
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  391 RFSYTNGA-YAGPEASSQTSRSLADFDRAQREIEAKLKAL 507
            R+ YTNGA Y  PEASSQTSRSL DFDRAQREI  K+K L
Sbjct: 1622 RYGYTNGASYGSPEASSQTSRSLEDFDRAQREIAEKMKNL 1661
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11082.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF78_9PHAE1.190e-573.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNB8_ECTSI2.170e-575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11082contigS-dermatodea_contig11082:2074..3864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size645
Cds size510
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11082.706.1prot_S-dermatodea_contig11082.706.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11082 2208..3864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.325204-UTR-S-dermatodea_contig11082:2073..22071622924186.325204-UTR-S-dermatodea_contig11082:2073..2207Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11082 2074..2207 -
1694079077.3509245-UTR-S-dermatodea_contig11082:2073..22071694079077.3509245-UTR-S-dermatodea_contig11082:2073..2207Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11082 2074..2207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.3344462-CDS-S-dermatodea_contig11082:2207..22761622924186.3344462-CDS-S-dermatodea_contig11082:2207..2276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11082 2208..2276 -
1694079077.359052-CDS-S-dermatodea_contig11082:2207..22761694079077.359052-CDS-S-dermatodea_contig11082:2207..2276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11082 2208..2276 -
1622924186.3485365-CDS-S-dermatodea_contig11082:2630..29591622924186.3485365-CDS-S-dermatodea_contig11082:2630..2959Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11082 2631..2959 -
1694079077.3755004-CDS-S-dermatodea_contig11082:2630..29591694079077.3755004-CDS-S-dermatodea_contig11082:2630..2959Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11082 2631..2959 -
1622924186.3574872-CDS-S-dermatodea_contig11082:3752..38641622924186.3574872-CDS-S-dermatodea_contig11082:3752..3864Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11082 3753..3864 -
1694079077.391435-CDS-S-dermatodea_contig11082:3752..38641694079077.391435-CDS-S-dermatodea_contig11082:3752..3864Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11082 3753..3864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11082.706.1

>prot_S-dermatodea_contig11082.706.1 ID=prot_S-dermatodea_contig11082.706.1|Name=mRNA_S-dermatodea_contig11082.706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=170bp
VVISDNSEAGAQEAEEEGEEEEEKGETKHTFKRKQPAGNKGAISEPLVLI
SSGADDSAAEEEFAIEESDVGEAKVSVKVEDEQKQEGEEDEGAAAVVEEE
KVELGHQSYEEPEHEHEQESESESESDEGERFSYTNGAYAGPEASSQTSR
SLADFDRAQREIEAKLKAL*
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mRNA from alignment at S-dermatodea_contig11082:2074..3864-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11082.706.1 ID=mRNA_S-dermatodea_contig11082.706.1|Name=mRNA_S-dermatodea_contig11082.706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1791bp|location=Sequence derived from alignment at S-dermatodea_contig11082:2074..3864- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGTCATCTCGGACAACTCAGAAGCCGGTGCTCAGGAGGCGGAGGAGGA
GGGGGAGGAGGAGGAGGAGAAGGGTGAGACTAAACACACCTTCAAGCGCA
AGCAACCTGCCGGTGAGGCGTTCTAGTTTGTTTTCGGCGTTTTTACTGCT
GTTATACTTGGCAACGCTTCGTGGTCACCACGGGCTTTGTGCTGTGCTCT
CATATGTTGCGAACTATAATAGTGGTGGACTGTGGCGGCTTGGCTTGGCT
TGCGCGCAAGAAACACGGGCGCGAATTTCGCGGGGCGTCTTGCGCTGGTA
CTCCACTTACATTGCACATGTCTCGAGCTTGGGGAGCACAGATGCGGTCG
ACAAAGGTCGGAAGGTCTGGTTAGGGCGTAAGGGAAGGAGCGGGGTCGTT
GCTCGATTGCCATTCAAGTACTCACCGGTGTTACCTGGGTGCGGCCTTCG
TGTTGACGTCGAGGCGTTTGGCATTGCGATTGTCGCGGGGTGGCTGCGGG
TGGCGGACCAAAGGTCTGTTCCCGTCTCCCGCGGATTTGATTCTGAGCGT
CGCAGGGTAATGCGATGCTCGACGTGCAGTTAGACCGCCCAAAAGCTCAT
GCCGCAATTCCGGTGAGCTTTGCATCCATACCTAGTGATGAGCCCAACAA
CTGTAGTGTTTGTTTTTCCTGAACAGTTGCGACTAAAAAACAACGTCCTA
GCTTGATTGATAACCACGCCGTCGTCCACAATGGCGATGTTGTTTCTTAC
GTCTGCCCAGCAGAGCCGTCAGGGTTTGATTTTGGCGGCCTACCGCCAGT
GTTTCACGTGTCTCCCCTATCCCCCTTACTCTCCCCCGGTTCCCGCACGC
CGGTGCACGTCCTTTCCCAAACGCATGTCACAACCTCCCGCCCGCCCCGC
CCAAGGCAATAAGGGCGCGATCAGCGAGCCGTTGGTGTTAATTTCCTCGG
GCGCGGATGACTCCGCCGCCGAGGAAGAGTTCGCAATCGAAGAGTCGGAT
GTCGGCGAGGCAAAGGTAAGCGTGAAAGTCGAAGATGAGCAGAAGCAGGA
GGGAGAGGAAGACGAGGGCGCGGCAGCCGTTGTGGAAGAGGAGAAGGTAG
AGCTGGGGCATCAATCCTATGAGGAGCCCGAGCACGAGCACGAGCAAGAG
TCGGAGTCGGAGTCGGAGTCGGACGAAGGGGAAAGGTTCTCCTACACCAA
CGGCGCGTACGCGGGCCCCGAGGCCAGCAGCCAGGTGAGGGAAAAGCAAG
GGTAGCGATCGTTCTGTTGTAGCTGTAACGACAAGCCGCCGCTGTCGCTG
CTGTGGTCGCCGCCGCGATCTCGGCTCGTGTCGCGAGAGACGTGCGAAGG
TTCAGCTTCGTTTTCGTCGATGGATGGGCTTGTGTGTGCTCTCCCCCTTT
TCGTTGTCGCGAGAGGGTGCTGTGGCTCCCGGTCGTGTGCCATGCCCGTT
TGGAAACGGCGCGTATTTGACATGACCACACCCCTCCCCCTCCCCCCCCC
CCCCCCACCCCCACCCCCACCCCCACCCCCACCCCCACCCCACCCCACTC
CCTACTCGCACCCGCGCCCCACTGTTGGTGGGGATCAGACGAGCCGCTCG
TTGGCTGACTTCGATCGAGCCCAGCGTGAGATAGAGGCTAAACTCAAGGC
GCTGTAGTTACGAACAAGAGAGCGCTGTGGTGAGAGCTCGGCTGTGTGGG
ACTCTTGGCTGGTGGGTTTGTTGGTGGTCGGTCTGTTTGGTCGGTCGGTC
CGTTGAACGGTCGCGTTCGACGTGTTTCCTGTGTGTTGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11082:2074..3864-

>mRNA_S-dermatodea_contig11082.706.1 ID=mRNA_S-dermatodea_contig11082.706.1|Name=mRNA_S-dermatodea_contig11082.706.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at S-dermatodea_contig11082:2074..3864- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGTCATCTCGGACAACTCAGAAGCCGGTGCTCAGGAGGCGGAGGAGGA
GGGGGAGGAGGAGGAGGAGAAGGGTGAGACTAAACACACCTTCAAGCGCA
AGCAACCTGCCGGTCGTCATCTCGGACAACTCAGAAGCCGGTGCTCAGGA
GGCGGAGGAGGAGGGGGAGGAGGAGGAGGAGAAGGGTGAGACTAAACACA
CCTTCAAGCGCAAGCAACCTGCCGGCAATAAGGGCGCGATCAGCGAGCCG
TTGGTGTTAATTTCCTCGGGCGCGGATGACTCCGCCGCCGAGGAAGAGTT
CGCAATCGAAGAGTCGGATGTCGGCGAGGCAAAGGTAAGCGTGAAAGTCG
AAGATGAGCAGAAGCAGGAGGGAGAGGAAGACGAGGGCGCGGCAGCCGTT
GTGGAAGAGGAGAAGGTAGAGCTGGGGCATCAATCCTATGAGGAGCCCGA
GCACGAGCACGAGCAAGAGTCGGAGTCGGAGTCGGAGTCGGACGAAGGGG
AAAGGTTCTCCTACACCAACGGCGCGTACGCGGGCCCCGAGGCCAGCAGC
CAGGCAATAAGGGCGCGATCAGCGAGCCGTTGGTGTTAATTTCCTCGGGC
GCGGATGACTCCGCCGCCGAGGAAGAGTTCGCAATCGAAGAGTCGGATGT
CGGCGAGGCAAAGGTAAGCGTGAAAGTCGAAGATGAGCAGAAGCAGGAGG
GAGAGGAAGACGAGGGCGCGGCAGCCGTTGTGGAAGAGGAGAAGGTAGAG
CTGGGGCATCAATCCTATGAGGAGCCCGAGCACGAGCACGAGCAAGAGTC
GGAGTCGGAGTCGGAGTCGGACGAAGGGGAAAGGTTCTCCTACACCAACG
GCGCGTACGCGGGCCCCGAGGCCAGCAGCCAGACGAGCCGCTCGTTGGCT
GACTTCGATCGAGCCCAGCGTGAGATAGAGGCTAAACTCAAGGCGCTGTA
GACGAGCCGCTCGTTGGCTGACTTCGATCGAGCCCAGCGTGAGATAGAGG
CTAAACTCAAGGCGCTGTAG
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