mRNA_S-dermatodea_contig11077.704.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11077.704.1
Unique NamemRNA_S-dermatodea_contig11077.704.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11077.704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11077contigS-dermatodea_contig11077:4228..4652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size425
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.1837826-UTR-S-dermatodea_contig11077:4227..43131622924186.1837826-UTR-S-dermatodea_contig11077:4227..4313Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11077 4228..4313 +
1694079077.2878847-UTR-S-dermatodea_contig11077:4227..43131694079077.2878847-UTR-S-dermatodea_contig11077:4227..4313Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11077 4228..4313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.1982288-CDS-S-dermatodea_contig11077:4313..46521622924186.1982288-CDS-S-dermatodea_contig11077:4313..4652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11077 4314..4652 +
1694079077.2997534-CDS-S-dermatodea_contig11077:4313..46521694079077.2997534-CDS-S-dermatodea_contig11077:4313..4652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11077 4314..4652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11077.704.1prot_S-dermatodea_contig11077.704.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11077 4314..4652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11077.704.1

>prot_S-dermatodea_contig11077.704.1 ID=prot_S-dermatodea_contig11077.704.1|Name=mRNA_S-dermatodea_contig11077.704.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
MRLEHAALVLSLSRIAYPATPLVNVSPAVPGQRSLRTQAPAADSKAYGRG
LHRFECPRDRLHNYGRAWDQSSSMLHTMGDEGVQDSRGSAYANTALAEDA
ELAPVVEGEHDSA
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mRNA from alignment at S-dermatodea_contig11077:4228..4652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11077.704.1 ID=mRNA_S-dermatodea_contig11077.704.1|Name=mRNA_S-dermatodea_contig11077.704.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at S-dermatodea_contig11077:4228..4652+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGCTGCCCAGTGCAGTGCTGCGCGTGTCGTGTCGCGTGCGTGAGTCCTC
GCTGTCCGCGACTCGAAGCGGGCTTGACCTCATGTAATGCGGCTGGAACA
CGCAGCGTTGGTGCTGTCCTTGTCCAGGATAGCCTATCCCGCAACTCCTC
TCGTCAACGTCAGTCCGGCCGTCCCAGGGCAACGCAGCCTACGCACGCAA
GCACCAGCAGCTGACAGCAAGGCTTACGGCCGCGGCCTGCACCGCTTCGA
ATGCCCCAGGGACCGGCTACACAATTATGGTAGAGCATGGGACCAAAGCA
GCTCTATGCTGCACACCATGGGCGATGAGGGAGTTCAAGACAGCCGGGGT
TCTGCTTACGCCAACACGGCACTAGCTGAGGATGCCGAACTGGCGCCTGT
CGTGGAGGGCGAACATGACAGCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11077:4228..4652+

>mRNA_S-dermatodea_contig11077.704.1 ID=mRNA_S-dermatodea_contig11077.704.1|Name=mRNA_S-dermatodea_contig11077.704.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig11077:4228..4652+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGCTGGAACACGCAGCGTTGGTGCTGTCCTTGTCCAGGATAGCCTA
TCCCGCAACTCCTCTCGTCAACGTCAGTCCGGCCGTCCCAGGGCAACGCA
GCCTACGCACGCAAGCACCAGCAGCTGACAGCAAGGCTTACGGCCGCGGC
CTGCACCGCTTCGAATGCCCCAGGGACCGGCTACACAATTATGGTAGAGC
ATGGGACCAAAGCAGCTCTATGCTGCACACCATGGGCGATGAGGGAGTTC
AAGACAGCCGGGGTTCTGCTTACGCCAACACGGCACTAGCTGAGGATGCC
GAACTGGCGCCTGTCGTGGAGGGCGAACATGACAGCGCGATGCGGCTGGA
ACACGCAGCGTTGGTGCTGTCCTTGTCCAGGATAGCCTATCCCGCAACTC
CTCTCGTCAACGTCAGTCCGGCCGTCCCAGGGCAACGCAGCCTACGCACG
CAAGCACCAGCAGCTGACAGCAAGGCTTACGGCCGCGGCCTGCACCGCTT
CGAATGCCCCAGGGACCGGCTACACAATTATGGTAGAGCATGGGACCAAA
GCAGCTCTATGCTGCACACCATGGGCGATGAGGGAGTTCAAGACAGCCGG
GGTTCTGCTTACGCCAACACGGCACTAGCTGAGGATGCCGAACTGGCGCC
TGTCGTGGAGGGCGAACATGACAGCGCG
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