mRNA_S-dermatodea_contig11076.703.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11076.703.1
Unique NamemRNA_S-dermatodea_contig11076.703.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11076.703.1 vs. uniprot
Match: A0A6H5KXR6_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR6_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 4.830e-63
Identity = 209/394 (53.05%), Postives = 243/394 (61.68%), Query Frame = 1 
Query:    4 PKPLDDLTGFTGEMRLVEMACLTALSSGAGKSAGLIMHEQLGFGHLLRGLRGDVRPSLRRRVLQAIATLVQNDPSLAPYLLGLEN-PHESDTPHAQPASDGSDKPAAKPGXXXXXXXXXXXXXXXXXXXXXXXXR------LIGAIGGEATAIADLTAGPDDMLAERITAILGYHSTGFGTVGGVGXXXXXXXXXXXXXXXXXXXXXDGGRLG--GYLLRAVVNILPLPGVRPSGLLPRPPTASFAASATAAALPNGSPPAVGGGIVGRVGATAEA-------EAAQEGRDWWKDDVALEEEGLEQQAATMXXXXXXXXXX---------------GRGR-VSRERLVEEALELTFQLVMSGDVAVNVLRGDATLVAALRRVAEGGPQRLQYDA 1089
            P   D L+G +GEM+LVEMACLT LSS AGKSAG IM E+LGFGHLLRGLRGDVRPSL+RRVLQAI+T++ +DPSLAP LLGL++  H  D                   XXXXXXXXXXXXXXXXXXXXXXXX       + GA  G  +++     G DD+L ERITAILGYH    G  G   XXXXXXXXXXX           GG  G  G   R VV  LPLP VRP          S AA+A ++      PP  G  +VGR   T E        + A+EGRDWWKD+VALEEEGLEQQAAT          X               G+GR VSRERLVEEALELTF+LVMSGD A++ L+ +  LV+A++RVAEGG Q+LQYD+
Sbjct:  504 PTRPDGLSGTSGEMKLVEMACLTGLSSRAGKSAGRIMLEELGFGHLLRGLRGDVRPSLQRRVLQAISTVIDSDPSLAPILLGLDDLDHPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGAGDGSPSSLGP-AVGEDDLL-ERITAILGYHMVAGG--GXXXXXXXXXXXXXXVPGGVEASVAPGGGDGPLGRAFRLVVGSLPLPRVRPF---------SSAAAAESSDFQQQRPPLEGAAVVGRGNGTREEGEGEGDYQVAREGRDWWKDEVALEEEGLEQQAATQAAAMFPGGSXXXXXXXXXXXWVWWWGKGRRVSRERLVEEALELTFRLVMSGDAALDTLKVNEDLVSAIKRVAEGGGQKLQYDS 884
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BLAST of mRNA_S-dermatodea_contig11076.703.1 vs. uniprot
Match: D7FNE8_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE8_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.370e-60
Identity = 208/392 (53.06%), Postives = 241/392 (61.48%), Query Frame = 1 
Query:    4 PKPLDDLTGFTGEMRLVEMACLTALSSGAGKSAGLIMHEQLGFGHLLRGLRGDVRPSLRRRVLQAIATLVQNDPSLAPYLLGLEN-PHESDTPHAQPASDGSDKPAAKPGXXXXXXXXXXXXXXXXXXXXXXXXRL-------IGAIGGEATAIADLTAGPDDMLAERITAILGYHSTGFGTVGGVGXXXXXXXXXXXXXXXXXXXXXDGGRLGGYLLRAVVNILPLPGVRPSGLLPRPPTASFAASATAAAL---PNGSPPAVGGGIVGRVGATAEAE------AAQEGRDWWKDDVALEEEGLEQQAATMXXXXXXXXXX------------GRGR-VSRERLVEEALELTFQLVMSGDVAVNVLRGDATLVAALRRVAEGGPQRLQYDA 1089
            P   D L+G +GEM+LVEMACLT LSS AGKSAG IM E+LGF HLLRGLRGDVRPSL+RRVLQAI+T++ +DPSLAP+ LGL+   H  D   A+              XXXXXXXXXXXXXXXXXXXXXXXX         +   G  + +      G DD++ ERITAILGYH       GG  XXXXXXX               G    G   R  V  LPLP VRP           F++SA A +L        P  G  +VGR   T E E      AA+EGRDWWKD+VALEEEGLEQQA   XXXXXXXXXX            GRGR VSRERLVEEALELTF+L+MSGD A++ L+ D  LV+A++RVAEGG Q+LQYD+
Sbjct:  621 PTRPDGLSGTSGEMKLVEMACLTGLSSRAGKSAGRIMLEELGFSHLLRGLRGDVRPSLQRRVLQAISTVIDSDPSLAPHFLGLDGLDHPDDDKTAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGAGDGSPSSPGPAVGEDDLV-ERITAILGYHMV---PGGGXXXXXXXXXFGVPGGVEAAVAPGSGDGPLGRAFRLAVGSLPLPRVRP-----------FSSSAAAESLGFHQQQRSPLEGAAVVGRGAGTREGEGEGDFQAAREGRDWWKDEVALEEEGLEQQAXXXXXXXXXXXXXXXXXXXXXXXXXGRGRRVSRERLVEEALELTFRLIMSGDAALDALKVDENLVSAIKRVAEGGGQKLQYDS 997
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11076.703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXR6_9PHAE4.830e-6353.05PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FNE8_ECTSI1.370e-6053.06Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11076contigS-dermatodea_contig11076:932..2851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.4
Seed ortholog evalue5.3e-57
Seed eggNOG ortholog2880.D7FNE8
KEGG koko:K16815
EggNOG free text desc.phosphatidylethanolamine catabolic process
EggNOG OGsKOG4231@1,KOG4231@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPatatin/Phospholipase A2-related
Ec32 orthologEc-22_001470.1
Exons2
Model size1089
Cds size1089
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924186.1310198-CDS-S-dermatodea_contig11076:931..18971622924186.1310198-CDS-S-dermatodea_contig11076:931..1897Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11076 932..1897 -
1694079077.2654014-CDS-S-dermatodea_contig11076:931..18971694079077.2654014-CDS-S-dermatodea_contig11076:931..1897Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11076 932..1897 -
1622924186.1404586-CDS-S-dermatodea_contig11076:2728..28511622924186.1404586-CDS-S-dermatodea_contig11076:2728..2851Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11076 2729..2851 -
1694079077.27893-CDS-S-dermatodea_contig11076:2728..28511694079077.27893-CDS-S-dermatodea_contig11076:2728..2851Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11076 2729..2851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11076.703.1prot_S-dermatodea_contig11076.703.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11076 932..2851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11076.703.1

>prot_S-dermatodea_contig11076.703.1 ID=prot_S-dermatodea_contig11076.703.1|Name=mRNA_S-dermatodea_contig11076.703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=363bp
MPKPLDDLTGFTGEMRLVEMACLTALSSGAGKSAGLIMHEQLGFGHLLRG
LRGDVRPSLRRRVLQAIATLVQNDPSLAPYLLGLENPHESDTPHAQPASD
GSDKPAAKPGGGGGGGGLGSGVRRRLRGAARRRRRLIGAIGGEATAIADL
TAGPDDMLAERITAILGYHSTGFGTVGGVGVGGGVGVGVTSVVAGAGAGL
GDGGRLGGYLLRAVVNILPLPGVRPSGLLPRPPTASFAASATAAALPNGS
PPAVGGGIVGRVGATAEAEAAQEGRDWWKDDVALEEEGLEQQAATMAAGG
GWGWWWGRGRVSRERLVEEALELTFQLVMSGDVAVNVLRGDATLVAALRR
VAEGGPQRLQYDA
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mRNA from alignment at S-dermatodea_contig11076:932..2851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11076.703.1 ID=mRNA_S-dermatodea_contig11076.703.1|Name=mRNA_S-dermatodea_contig11076.703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1920bp|location=Sequence derived from alignment at S-dermatodea_contig11076:932..2851- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGAAGCCTCTGGACGATCTAACAGGCTTCACCGGCGAGATGCGGCT
GGTGGAGATGGCATGCCTCACGGCGTTATCGTCTGGGGCCGGGAAGAGCG
CCGGGCTCATCATGCACGAGCAGGTGCCCTTCTCTCTTCTGTCCCACCCC
GCCCCTTGCCTGTCGCCACTGATGGATTCTCGGTTGAATTGATAATAGCC
AGTAGTCGGGCCGGATTCAGCCGATCGGCTATACGTGTGCAAATCAATCA
ATCAATTAGGCTAAGGCTAACTGTGTTGTTAACGACAAAAACAAAAAAGT
GGCTACTTCGCATGATACGCTTGCCTACACCGTAAATTTTACCGTTGGCT
GGTCGCAATCAAAGGCTACACCCCATCACAGTTTTTCACGCAAATGTTTT
CAACATTCTAGGGCAGTTTTCGTTACATCTGCGTTTCTTTTTGAGCTGGC
CGGTACTGTATTACGCTCCCAACCGATCGGTGGCCAGATCGATCGGCACA
AAAATGGCCGCAATCAAAATTAAGCGAATCGTCTATCGTGTGATTTGACG
GATTTAGTGATTACCTATCGCACTTATTACAGTAAGAATCCCGACCGTGG
CCAGATGAGCACCGAACGTCGAAGGCACATGAAACTTGAAACAAAGTCCG
CCAGAAACGTCAGTTCAAGCGGGAACTGCGCGGAGACTTCCGCTCTCTTT
TTTAGAGATAACGAACAGTTATCTTCGTTCTTGTGTCCGCCATTCATCGT
TGATCTTATCACCACGACTACTGTAACATACAGTAAATACAACAACGCAC
ATTAAACTAGCAAGGCACACACACACACATCGCCGCGCTGCGCTGAAATC
GCAAAACCTGCCTCCTCTCCCCGCCCGCCTGCGTACATCTCTCCTTGGCT
TTGCCTCCCCCTCTTTTCCTCGCCCTTCCTTGTTTGCTTGTTTTGCGAGA
TCAGCTCGGGTTCGGGCATCTCCTCCGCGGGCTGCGCGGCGACGTCCGCC
CCAGCCTCCGCCGCCGAGTTCTCCAAGCCATCGCCACCCTCGTGCAGAAC
GACCCTTCCCTCGCACCTTACCTCCTCGGGCTCGAAAACCCTCACGAAAG
CGACACCCCGCACGCCCAGCCCGCCTCGGACGGGTCCGATAAACCCGCCG
CTAAACCCGGCGGCGGCGGCGGGGGCGGCGGTTTGGGCAGCGGTGTCCGC
AGGCGGCTTCGCGGGGCCGCGCGCCGCCGCCGGCGCCTGATCGGCGCTAT
CGGCGGAGAGGCTACCGCCATCGCCGATCTTACGGCCGGCCCTGACGATA
TGCTCGCCGAGCGCATCACCGCGATCCTCGGGTACCACTCGACCGGTTTC
GGTACCGTGGGAGGCGTTGGCGTTGGCGGTGGCGTTGGCGTTGGTGTGAC
CTCGGTCGTCGCGGGCGCGGGTGCTGGGTTGGGCGACGGCGGACGCCTGG
GGGGTTATTTGTTGCGCGCGGTTGTGAATATTTTGCCGTTGCCGGGGGTG
CGCCCGTCTGGTTTGTTACCGCGACCACCCACCGCCTCTTTCGCAGCGTC
CGCTACCGCGGCCGCGCTACCGAATGGTTCTCCTCCGGCCGTCGGTGGCG
GTATCGTCGGTAGGGTGGGAGCGACGGCGGAGGCGGAAGCGGCGCAAGAA
GGGCGGGATTGGTGGAAGGACGATGTGGCGCTCGAGGAAGAAGGGTTGGA
GCAGCAGGCGGCCACGATGGCAGCGGGTGGGGGGTGGGGGTGGTGGTGGG
GTCGGGGGAGGGTTTCGAGGGAGCGGCTTGTGGAGGAAGCCCTTGAGCTC
ACGTTCCAGCTGGTGATGTCCGGCGATGTCGCTGTGAACGTGTTGAGGGG
AGACGCGACCCTGGTGGCGGCGCTCCGGAGGGTGGCCGAGGGTGGCCCGC
AGCGGCTGCAGTATGACGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11076:932..2851-

>mRNA_S-dermatodea_contig11076.703.1 ID=mRNA_S-dermatodea_contig11076.703.1|Name=mRNA_S-dermatodea_contig11076.703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2178bp|location=Sequence derived from alignment at S-dermatodea_contig11076:932..2851- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGAAGCCTCTGGACGATCTAACAGGCTTCACCGGCGAGATGCGGCT
GGTGGAGATGGCATGCCTCACGGCGTTATCGTCTGGGGCCGGGAAGAGCG
CCGGGCTCATCATGCACGAGCAGATGCCGAAGCCTCTGGACGATCTAACA
GGCTTCACCGGCGAGATGCGGCTGGTGGAGATGGCATGCCTCACGGCGTT
ATCGTCTGGGGCCGGGAAGAGCGCCGGGCTCATCATGCACGAGCAGCTCG
GGTTCGGGCATCTCCTCCGCGGGCTGCGCGGCGACGTCCGCCCCAGCCTC
CGCCGCCGAGTTCTCCAAGCCATCGCCACCCTCGTGCAGAACGACCCTTC
CCTCGCACCTTACCTCCTCGGGCTCGAAAACCCTCACGAAAGCGACACCC
CGCACGCCCAGCCCGCCTCGGACGGGTCCGATAAACCCGCCGCTAAACCC
GGCGGCGGCGGCGGGGGCGGCGGTTTGGGCAGCGGTGTCCGCAGGCGGCT
TCGCGGGGCCGCGCGCCGCCGCCGGCGCCTGATCGGCGCTATCGGCGGAG
AGGCTACCGCCATCGCCGATCTTACGGCCGGCCCTGACGATATGCTCGCC
GAGCGCATCACCGCGATCCTCGGGTACCACTCGACCGGTTTCGGTACCGT
GGGAGGCGTTGGCGTTGGCGGTGGCGTTGGCGTTGGTGTGACCTCGGTCG
TCGCGGGCGCGGGTGCTGGGTTGGGCGACGGCGGACGCCTGGGGGGTTAT
TTGTTGCGCGCGGTTGTGAATATTTTGCCGTTGCCGGGGGTGCGCCCGTC
TGGTTTGTTACCGCGACCACCCACCGCCTCTTTCGCAGCGTCCGCTACCG
CGGCCGCGCTACCGAATGGTTCTCCTCCGGCCGTCGGTGGCGGTATCGTC
GGTAGGGTGGGAGCGACGGCGGAGGCGGAAGCGGCGCAAGAAGGGCGGGA
TTGGTGGAAGGACGATGTGGCGCTCGAGGAAGAAGGGTTGGAGCAGCAGG
CGGCCACGATGGCAGCGGGTGGGGGGTGGGGGTGGTGGTGGGGTCGGGGG
AGGGTTTCGAGGGAGCGGCTTGTGGAGGAAGCCCTTGAGCTCACGTTCCA
GCTGGTGATGTCCGGCGATGTCGCTGTGAACGTGTTGAGGGGAGACGCGA
CCCTGGTGGCGGCGCTCCGGAGGGTGGCCGAGGGTGGCCCGCAGCGGCTG
CAGTATGACGCCCTCGGGTTCGGGCATCTCCTCCGCGGGCTGCGCGGCGA
CGTCCGCCCCAGCCTCCGCCGCCGAGTTCTCCAAGCCATCGCCACCCTCG
TGCAGAACGACCCTTCCCTCGCACCTTACCTCCTCGGGCTCGAAAACCCT
CACGAAAGCGACACCCCGCACGCCCAGCCCGCCTCGGACGGGTCCGATAA
ACCCGCCGCTAAACCCGGCGGCGGCGGCGGGGGCGGCGGTTTGGGCAGCG
GTGTCCGCAGGCGGCTTCGCGGGGCCGCGCGCCGCCGCCGGCGCCTGATC
GGCGCTATCGGCGGAGAGGCTACCGCCATCGCCGATCTTACGGCCGGCCC
TGACGATATGCTCGCCGAGCGCATCACCGCGATCCTCGGGTACCACTCGA
CCGGTTTCGGTACCGTGGGAGGCGTTGGCGTTGGCGGTGGCGTTGGCGTT
GGTGTGACCTCGGTCGTCGCGGGCGCGGGTGCTGGGTTGGGCGACGGCGG
ACGCCTGGGGGGTTATTTGTTGCGCGCGGTTGTGAATATTTTGCCGTTGC
CGGGGGTGCGCCCGTCTGGTTTGTTACCGCGACCACCCACCGCCTCTTTC
GCAGCGTCCGCTACCGCGGCCGCGCTACCGAATGGTTCTCCTCCGGCCGT
CGGTGGCGGTATCGTCGGTAGGGTGGGAGCGACGGCGGAGGCGGAAGCGG
CGCAAGAAGGGCGGGATTGGTGGAAGGACGATGTGGCGCTCGAGGAAGAA
GGGTTGGAGCAGCAGGCGGCCACGATGGCAGCGGGTGGGGGGTGGGGGTG
GTGGTGGGGTCGGGGGAGGGTTTCGAGGGAGCGGCTTGTGGAGGAAGCCC
TTGAGCTCACGTTCCAGCTGGTGATGTCCGGCGATGTCGCTGTGAACGTG
TTGAGGGGAGACGCGACCCTGGTGGCGGCGCTCCGGAGGGTGGCCGAGGG
TGGCCCGCAGCGGCTGCAGTATGACGCC
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