mRNA_S-dermatodea_contig11072.700.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11072.700.1
Unique NamemRNA_S-dermatodea_contig11072.700.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11072.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11072contigS-dermatodea_contig11072:503..1330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-14_000750.1
Exons3
Model size338
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11072.700.1prot_S-dermatodea_contig11072.700.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11072 505..1330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.9397757-CDS-S-dermatodea_contig11072:504..6571622924185.9397757-CDS-S-dermatodea_contig11072:504..657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11072 505..657 -
1694079077.1367135-CDS-S-dermatodea_contig11072:504..6571694079077.1367135-CDS-S-dermatodea_contig11072:504..657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11072 505..657 -
1622924185.9524798-CDS-S-dermatodea_contig11072:1004..11001622924185.9524798-CDS-S-dermatodea_contig11072:1004..1100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11072 1005..1100 -
1694079077.1453848-CDS-S-dermatodea_contig11072:1004..11001694079077.1453848-CDS-S-dermatodea_contig11072:1004..1100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11072 1005..1100 -
1622924185.96676-CDS-S-dermatodea_contig11072:1243..13301622924185.96676-CDS-S-dermatodea_contig11072:1243..1330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11072 1244..1330 -
1694079077.1541924-CDS-S-dermatodea_contig11072:1243..13301694079077.1541924-CDS-S-dermatodea_contig11072:1243..1330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11072 1244..1330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11072.700.1

>prot_S-dermatodea_contig11072.700.1 ID=prot_S-dermatodea_contig11072.700.1|Name=mRNA_S-dermatodea_contig11072.700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
QGRSEKAAEAAAAAAASASRNSASSLVRQVDLMLRRLLGPDLLSMLCVVA
VSAVSIVGVWKVGGRPGIATLVMGVCVGLFIQNWDRGLDLLNFVLELAGM
SPESAHPPSPNR
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mRNA from alignment at S-dermatodea_contig11072:503..1330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11072.700.1 ID=mRNA_S-dermatodea_contig11072.700.1|Name=mRNA_S-dermatodea_contig11072.700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig11072:503..1330- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGACGGAGTGAGAAGGCGGCAGAAGCGGCCGCTGCAGCGGCTGCAAG
CGCGTCGAGGAACAGCGCGTCGAGCTTGGTTCGCCAGGTATGTATGTCCT
GAGGAATGCGAAACTGATCCGACCGACCGTGGACAAGTTGTCCAGTAATA
AGCTTTCGTCAAGCTGCTGTGCCATTTCGCTCTGACCACCGCAGCGCTCG
TCATCGGCAAATGCCCGTTGCTTCGATAAGGTGGATCTGATGCTGAGAAG
GCTGCTGGGACCGGACTTGCTGAGCATGCTCTGTGTCGTGGCCGTGTCTG
CCGTGAGCATCGTCGGCGTCTGGAAGGTGACGTTCTTCATGTCTGTGGGG
GTGTGTAGAGTGTTGCGCGCACGACGCAAGTGGTTTGGTGTTGGAAGTTT
GCACGTCCTACTATAATATTATAGTTCTCCACTGCCGAAACCTGGCGCTT
TCGGGAACCAGTTTTGGTGGAGGGCCACCAACCTCAACTGGTGATACCTG
AAATAAGCCGTGCGCTTTTTATCTCTGCACGACGGTCTTGTACCCAAGGC
CGGGCGAATCGCGAGGTCAATAGGTCGTCGGGTCAACACCCACCTAGCGC
CAGTGCTTCGCATACCGAAGCCATATGGCCGTTGCCCCCGCATGACTCGT
CGATTCGGCGGAATCTTCCACAGGTTGGAGGAAGACCAGGGATAGCTACA
CTGGTCATGGGAGTCTGTGTAGGGCTGTTCATCCAAAACTGGGACAGAGG
CCTCGACCTCTTGAATTTCGTGCTGGAGCTGGCGGGAATGAGCCCGGAAA
GCGCGCACCCGCCGTCGCCGAATAGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11072:503..1330-

>mRNA_S-dermatodea_contig11072.700.1 ID=mRNA_S-dermatodea_contig11072.700.1|Name=mRNA_S-dermatodea_contig11072.700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig11072:503..1330- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGACGGAGTGAGAAGGCGGCAGAAGCGGCCGCTGCAGCGGCTGCAAG
CGCGTCGAGGAACAGCGCGTCGAGCTTGGTTCGCCAGCAGGGACGGAGTG
AGAAGGCGGCAGAAGCGGCCGCTGCAGCGGCTGCAAGCGCGTCGAGGAAC
AGCGCGTCGAGCTTGGTTCGCCAGGTGGATCTGATGCTGAGAAGGCTGCT
GGGACCGGACTTGCTGAGCATGCTCTGTGTCGTGGCCGTGTCTGCCGTGA
GCATCGTCGGCGTCTGGAAGGTGGATCTGATGCTGAGAAGGCTGCTGGGA
CCGGACTTGCTGAGCATGCTCTGTGTCGTGGCCGTGTCTGCCGTGAGCAT
CGTCGGCGTCTGGAAGGTTGGAGGAAGACCAGGGATAGCTACACTGGTCA
TGGGAGTCTGTGTAGGGCTGTTCATCCAAAACTGGGACAGAGGCCTCGAC
CTCTTGAATTTCGTGCTGGAGCTGGCGGGAATGAGCCCGGAAAGCGCGCA
CCCGCCGTCGCCGAATAGAGTTGGAGGAAGACCAGGGATAGCTACACTGG
TCATGGGAGTCTGTGTAGGGCTGTTCATCCAAAACTGGGACAGAGGCCTC
GACCTCTTGAATTTCGTGCTGGAGCTGGCGGGAATGAGCCCGGAAAGCGC
GCACCCGCCGTCGCCGAATAGA
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