mRNA_S-dermatodea_contig11070.699.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11070.699.1
Unique NamemRNA_S-dermatodea_contig11070.699.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11070.699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11070contigS-dermatodea_contig11070:2400..3095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11070.699.1prot_S-dermatodea_contig11070.699.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11070 2400..2878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.887538-CDS-S-dermatodea_contig11070:2399..25371622924185.887538-CDS-S-dermatodea_contig11070:2399..2537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11070 2400..2537 -
1694079077.1083467-CDS-S-dermatodea_contig11070:2399..25371694079077.1083467-CDS-S-dermatodea_contig11070:2399..2537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11070 2400..2537 -
1622924185.8962162-CDS-S-dermatodea_contig11070:2797..28781622924185.8962162-CDS-S-dermatodea_contig11070:2797..2878Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11070 2798..2878 -
1694079077.1180024-CDS-S-dermatodea_contig11070:2797..28781694079077.1180024-CDS-S-dermatodea_contig11070:2797..2878Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11070 2798..2878 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.9047134-UTR-S-dermatodea_contig11070:2878..30951622924185.9047134-UTR-S-dermatodea_contig11070:2878..3095Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11070 2879..3095 -
1694079077.128541-UTR-S-dermatodea_contig11070:2878..30951694079077.128541-UTR-S-dermatodea_contig11070:2878..3095Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11070 2879..3095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11070.699.1

>prot_S-dermatodea_contig11070.699.1 ID=prot_S-dermatodea_contig11070.699.1|Name=mRNA_S-dermatodea_contig11070.699.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp
MATSSEQTMASASHHHPPPSPASSEATSIRRAPGTQASCNKVVHGERVKG
SVVRTCFACGWPNHATATSSRTW
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mRNA from alignment at S-dermatodea_contig11070:2400..3095-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11070.699.1 ID=mRNA_S-dermatodea_contig11070.699.1|Name=mRNA_S-dermatodea_contig11070.699.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig11070:2400..3095- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGCTGTATCACTCTGTACTGCAGTGGTGCGCCGAGTTTCATGACTCGA
GACTGCTTGTGTGGTTCGACATAAACAAAAGTTACCACGGCAAAAGTACG
CCGATCGAATAAATGCGGGGAGATTAGGCAGGGAACCCGTTGCCTCGCGC
GTACACGAGCGTAAATTAGTTGGGGCACCCTATCATTTTGTCCGATACCG
ACCTGGCGGGAGCGCACATGGCTACATCGAGTGAACAGACCATGGCAAGT
GCATCGCACCATCATCCACCGCCAAGTCCGGCCTCCAGCGAAGCAACGGT
GAGCGAGTACCCCCCGATATAGCGAGGCACGAAGCCGGTGTGGGGTTGGG
CCGATATACACAGTAGACGTCCCGAGTTTGACGACACGCCGAGATTGGCC
GGGTCCGGCGTTCGATGCGACGAAGGTGTAGGTGTGTCGTCCGGGACGCT
GACGGTAGTGTGTGGACTGTTCGACCGCGACAACCTCGTTGATGCGATGA
ATCGGCATCTTCACCTTCCTCCAAAACCCCCTTGTTGCTTGTAATTATTT
GAAATTAGAGTATCCGCAGGGCCCCAGGCACCCAAGCTTCATGCAACAAG
GTGGTTCATGGCGAACGTGTCAAGGGCAGCGTCGTCCGAACGTGTTTCGC
GTGTGGTTGGCCGAACCACGCCACAGCAACGTCATCTCGCACATGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11070:2400..3095-

>mRNA_S-dermatodea_contig11070.699.1 ID=mRNA_S-dermatodea_contig11070.699.1|Name=mRNA_S-dermatodea_contig11070.699.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig11070:2400..3095- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTACATCGAGTGAACAGACCATGGCAAGTGCATCGCACCATCATCC
ACCGCCAAGTCCGGCCTCCAGCGAAGCAACGATGGCTACATCGAGTGAAC
AGACCATGGCAAGTGCATCGCACCATCATCCACCGCCAAGTCCGGCCTCC
AGCGAAGCAACGAGTATCCGCAGGGCCCCAGGCACCCAAGCTTCATGCAA
CAAGGTGGTTCATGGCGAACGTGTCAAGGGCAGCGTCGTCCGAACGTGTT
TCGCGTGTGGTTGGCCGAACCACGCCACAGCAACGTCATCTCGCACATGG
AGTATCCGCAGGGCCCCAGGCACCCAAGCTTCATGCAACAAGGTGGTTCA
TGGCGAACGTGTCAAGGGCAGCGTCGTCCGAACGTGTTTCGCGTGTGGTT
GGCCGAACCACGCCACAGCAACGTCATCTCGCACATGG
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