mRNA_S-dermatodea_contig1107.698.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1107.698.1
Unique NamemRNA_S-dermatodea_contig1107.698.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: A0A7S2DUA8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DUA8_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 4.330e-9
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGCDISGL 198
            R +R LRPLR+I R PG++ V+N ++R L  V NV +V++++ LIF ILGV LF G    C ++G+
Sbjct:  110 RAMRCLRPLRVISRNPGMKMVINTLLRALPGVANVTLVMMLLLLIFGILGVQLFMGKFSECAVAGV 175          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: A0A818IVU1_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818IVU1_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 4.520e-9
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGCD 186
            R LRALRPLR+I RAPGLR VV+A++  L  + N+ ++  V F+IF ILGV LFKG  + C+
Sbjct:  807 RLLRALRPLRVINRAPGLRLVVHALLSSLRPIGNIVIICCVFFIIFGILGVQLFKGKFYYCE 868          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: A0A818JEY9_9BILA (Voltage-dependent T-type calcium channel subunit alpha n=9 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818JEY9_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 4.550e-9
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGCD 186
            R LRALRPLR+I RAPGLR VV+A++  L  + N+ ++  V F+IF ILGV LFKG  + C+
Sbjct: 1196 RLLRALRPLRVINRAPGLRLVVHALLSSLRPIGNIVIICCVFFIIFGILGVQLFKGKFYYCE 1257          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: A0A821SWI8_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821SWI8_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 4.570e-9
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGCD 186
            R LRALRPLR+I RAPGLR VV+A++  L  + N+ ++  V F+IF ILGV LFKG  + C+
Sbjct: 1716 RLLRALRPLRVINRAPGLRLVVHALLSSLRPIGNIVIICCVFFIIFGILGVQLFKGKFYYCE 1777          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: C3ZY89_BRAFL (Sodium channel protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZY89_BRAFL)

HSP 1 Score: 60.8 bits (146), Expect = 8.230e-9
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGC 183
            R +RALRPLR I RA G++ VVNA+I  + SV NV +V LV +LIF+I+GV LFKG  F C
Sbjct:   94 RVIRALRPLRAISRAEGMKVVVNALIGAIPSVTNVLMVCLVFWLIFAIMGVQLFKGKFFKC 154          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: A0A6P4YVC3_BRABE (Sodium channel protein n=18 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YVC3_BRABE)

HSP 1 Score: 60.8 bits (146), Expect = 8.530e-9
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGC 183
            R +RALRPLR I RA G++ VVNA+I  + SV NV +V LV +LIF+I+GV LFKG  F C
Sbjct: 1377 RVIRALRPLRAISRAEGMKVVVNALIGAIPSVTNVLMVCLVFWLIFAIMGVQLFKGKFFKC 1437          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: A0A5D6XVA6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVA6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.180e-8
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   34 IPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGCDISGLDTVSLVAVMEEFGLSRAMYVQ 261
            I R PG++RVVNAM+  + S++NV +V  +I LIF ILGV  FKG L+ CD+S      +  +   FG S   + Q
Sbjct: 1403 ISRVPGMKRVVNAMLSSIPSIMNVFLVCSLILLIFGILGVNFFKGRLYYCDMSSFSAEQMARLEGTFGFSSLSFKQ 1478          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: A0A5D6XG87_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XG87_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.180e-8
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGCDISGLDTVS 210
            R  RALRPLR+I R PGL+ VVN++I  +  ++NV VV L++F IFSIL V   KG L+ C     D +S
Sbjct:  991 RTFRALRPLRVINRNPGLKLVVNSLIASIPQIVNVIVVCLLVFTIFSILAVNNLKGKLYSCRGDAFDALS 1060          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: K3WQ22_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ22_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 3.900e-8
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGCDISGLDTVS 210
            R  RALRPLR+I R PGL+ VV+++I  +  +LNV VV L++F IFSIL V   KG L+ C     D +S
Sbjct:  136 RTFRALRPLRMINRNPGLKLVVSSLIASIPQILNVIVVCLLVFTIFSILAVNNLKGKLYSCQGDVFDALS 205          
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Match: G5A1T8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A1T8_PHYSP)

HSP 1 Score: 58.5 bits (140), Expect = 5.470e-8
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILGVYLFKGALFGCDISGLDTVSLVAVMEEFGLSRA 249
            R LRALRPLR+I R PGL+ VV+A+I  + +VLNV  + + +FL+FSI  V+  KG    C    LD  SL    +EF +S A
Sbjct:  678 RDLRALRPLRMISRRPGLKLVVSALIESIPAVLNVVFLSMALFLLFSIAAVHFLKGRFRACTGDVLD--SLPTDQKEFLVSPA 758          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1107.698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2DUA8_9EUKA4.330e-946.97Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A818IVU1_9BILA4.520e-954.84Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A818JEY9_9BILA4.550e-954.84Voltage-dependent T-type calcium channel subunit a... [more]
A0A821SWI8_9BILA4.570e-954.84Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
C3ZY89_BRAFL8.230e-959.02Sodium channel protein n=1 Tax=Branchiostoma flori... [more]
A0A6P4YVC3_BRABE8.530e-959.02Sodium channel protein n=18 Tax=Branchiostoma TaxI... [more]
A0A5D6XVA6_9STRA2.180e-843.42Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A5D6XG87_9STRA2.180e-850.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WQ22_GLOUD3.900e-850.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
G5A1T8_PHYSP5.470e-846.99Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1107contigS-dermatodea_contig1107:19352..20067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog10228.TriadP21513
KEGG koko:K04854
KEGG TC1.A.1.11.12,1.A.1.11.28
KEGG Pathwayko04010,ko04020,ko04713,ko04925,ko04927,ko04930,ko04934,map04010,map04020,map04713,map04925,map04927,map04930,map04934
EggNOG free text desc.low voltage-gated calcium channel activity
EggNOG OGs3ARFA@33154,3C2IT@33208,KOG2301@1,KOG2302@2759
COG Functional cat.PT
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categorysignal anchor
Exons2
Model size273
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.8442926-CDS-S-dermatodea_contig1107:19352..194821622924185.8442926-CDS-S-dermatodea_contig1107:19352..19482Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1107 19353..19482 -
1694079077.0390546-CDS-S-dermatodea_contig1107:19352..194821694079077.0390546-CDS-S-dermatodea_contig1107:19352..19482Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1107 19353..19482 -
1622924185.8598957-CDS-S-dermatodea_contig1107:19927..200671622924185.8598957-CDS-S-dermatodea_contig1107:19927..20067Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1107 19928..20067 -
1694079077.0924077-CDS-S-dermatodea_contig1107:19927..200671694079077.0924077-CDS-S-dermatodea_contig1107:19927..20067Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1107 19928..20067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1107.698.1prot_S-dermatodea_contig1107.698.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1107 19353..20067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1107.698.1

>prot_S-dermatodea_contig1107.698.1 ID=prot_S-dermatodea_contig1107.698.1|Name=mRNA_S-dermatodea_contig1107.698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
RGLRALRPLRLIPRAPGLRRVVNAMIRGLSSVLNVAVVVLVIFLIFSILG
VYLFKGALFGCDISGLDTVSLVAVMEEFGLSRAMYVQPLR
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mRNA from alignment at S-dermatodea_contig1107:19352..20067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1107.698.1 ID=mRNA_S-dermatodea_contig1107.698.1|Name=mRNA_S-dermatodea_contig1107.698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=716bp|location=Sequence derived from alignment at S-dermatodea_contig1107:19352..20067- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGGGATTGCGAGCCCTAAGACCGCTTCGACTCATCCCTCGTGCTCCAGG ATTACGACGGGTTGTGAACGCAATGATCCGCGGCCTATCGTCGGTCCTCA ACGTGGCGGTTGTGGTGCTCGTGATTTTCTTGATCTTCAGGTGATCAGTA TGCATACCATAATTATACATCTCGGCGACCAACGCAGGGCAAGCGCAAAA ACGCAAAATCGATTTCAGAAATACTAGGCCGGCAGTGAATTTCCTACCCG CGCCAAGGCAGGCGAAACAAAGGAGGAGCGGTCACGGCCAGGGAAACCGT ACTGGTTGGTATTGTAGCTGGACTCATTGATGCCTGCGCTCCACCTGGCA GGCGGCTCGACCCCCAACGGATACGTAAAGCCCTATGATACTAGTTTAGT AGGACTTGACTAATTTTGAGCCGTTTTATTTCATGTTGCAGCAGTGGCAC CCCGGCTCTGTAAGACAGAACAATCGTTCGACGCCGTTTTTGTTGAAACA GTTGGGAGCACGCAGGAGGAAACAAATTTCGCGATAACGATATTGACCCC CTCCTCCTGTTGGCGCTACGGGCGCCCACATGCAGCATTCTTGGGGTCTA CCTTTTCAAGGGGGCGTTGTTCGGCTGCGATATTTCCGGGCTGGACACGG TGTCTCTTGTCGCGGTGATGGAAGAGTTCGGGCTGTCTAGAGCGATGTAT GTGCAGCCGCTGCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1107:19352..20067-

>mRNA_S-dermatodea_contig1107.698.1 ID=mRNA_S-dermatodea_contig1107.698.1|Name=mRNA_S-dermatodea_contig1107.698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig1107:19352..20067- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGGGATTGCGAGCCCTAAGACCGCTTCGACTCATCCCTCGTGCTCCAGG
ATTACGACGGGTTGTGAACGCAATGATCCGCGGCCTATCGTCGGTCCTCA
ACGTGGCGGTTGTGGTGCTCGTGATTTTCTTGATCTTCAGCGGGGATTGC
GAGCCCTAAGACCGCTTCGACTCATCCCTCGTGCTCCAGGATTACGACGG
GTTGTGAACGCAATGATCCGCGGCCTATCGTCGGTCCTCAACGTGGCGGT
TGTGGTGCTCGTGATTTTCTTGATCTTCAGCATTCTTGGGGTCTACCTTT
TCAAGGGGGCGTTGTTCGGCTGCGATATTTCCGGGCTGGACACGGTGTCT
CTTGTCGCGGTGATGGAAGAGTTCGGGCTGTCTAGAGCGATGTATGTGCA
GCCGCTGCGCCATTCTTGGGGTCTACCTTTTCAAGGGGGCGTTGTTCGGC
TGCGATATTTCCGGGCTGGACACGGTGTCTCTTGTCGCGGTGATGGAAGA
GTTCGGGCTGTCTAGAGCGATGTATGTGCAGCCGCTGCGC
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