mRNA_S-dermatodea_contig11064.693.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11064.693.1
Unique NamemRNA_S-dermatodea_contig11064.693.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: A0A6H5KJY8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY8_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 2.660e-52
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    4 RVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYGY 279
            RVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFV+L+LYGY
Sbjct:    4 RVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVALSLYGY 95
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: D8LQQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ6_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 7.550e-52
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYGY 279
            L+VKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSL+LYGY
Sbjct:  278 LKVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLSLYGY 370
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: A0A835Z4N6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.990e-46
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYGY 279
            L+VKQQAYIEIAE +FAHLHTLSLQWHLKKKMGNV+RSMDRGT+AANNL+TYLFLYLVPAI EC+ATVI+FY  F DWRLATMAF +LTLYGY
Sbjct:  167 LKVKQQAYIEIAEHTFAHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLVTYLFLYLVPAIGECVATVIIFYFKFSDWRLATMAFAALTLYGY 259
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: A0A7S2UVY2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY2_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.450e-36
Identity = 64/93 (68.82%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYGY 279
            L+VKQ+AY+EIAE++FAHLH LSLQWHLKKKMGNV+RSMDRGT+AAN L+TYLFLYLVP++AEC+A  IVF ++F  W +A +AF S+ +YG+
Sbjct:  140 LKVKQEAYVEIAERTFAHLHNLSLQWHLKKKMGNVIRSMDRGTEAANTLVTYLFLYLVPSLAECLAVCIVFALHFKVWTIALLAFGSVVVYGF 232
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: A0A7S3UX91_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX91_HETAK)

HSP 1 Score: 130 bits (326), Expect = 4.380e-33
Identity = 59/92 (64.13%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYG 276
            L+VKQ AYIEIA+++FAHLH LSLQWHLKK+MGNV+RSMDRG++AAN L  YLFLYL+P++AEC+A  +VF + F  W +A +AF S+ +YG
Sbjct:  192 LKVKQAAYIEIAQRTFAHLHNLSLQWHLKKRMGNVIRSMDRGSEAANTLTNYLFLYLLPSLAECLAVCVVFALKFRSWEVALLAFCSVCIYG 283
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: A0A0K6S8V7_9ALVE (Uncharacterized protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6S8V7_9ALVE)

HSP 1 Score: 127 bits (318), Expect = 5.310e-32
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYGY 279
            LRVKQ AYIEIA+ +F HL  LSLQWHLKKKMGNVVRSMDRGT+AA++L+TYLFLYL+P + ECIA  I+F+  F    LA++ F+SL++YGY
Sbjct:  339 LRVKQAAYIEIAQFTFEHLQRLSLQWHLKKKMGNVVRSMDRGTEAADSLMTYLFLYLLPTVGECIAVCIIFFSYFKSPTLASLLFLSLSVYGY 431
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: A0A2R5G0X4_9STRA (ABC transporter ATP-binding protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0X4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.180e-30
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYG 276
            L+VKQ AY+E+AE++F HLH LSL+WHLKK+MGNV+RSMDRG  AAN L+TYLFLYL+P++AEC+   ++FY +FD   ++  AF+S   Y 
Sbjct:  342 LKVKQTAYVEVAEETFTHLHALSLEWHLKKRMGNVLRSMDRGVSAANTLVTYLFLYLLPSVAECVVVFVIFYSHFDIPTVSATAFISFVAYS 433
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: A0A7S2SDW9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SDW9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.410e-29
Identity = 55/92 (59.78%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYG 276
            L+VKQ AY+EIAEQ+F HLH+LSL+WH+KKKMGNV+RSMDRG  AA+ ++TYLFLYLVP++AEC    ++FY +F+   L+  AF+S   Y 
Sbjct:  309 LKVKQTAYVEIAEQTFTHLHSLSLEWHVKKKMGNVLRSMDRGVQAADTVVTYLFLYLVPSVAECTIVFVIFYSHFNIPTLSATAFMSFVFYA 400
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: I2CPG9_NANGC (Atp-binding cassette superfamily (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPG9_NANGC)

HSP 1 Score: 116 bits (290), Expect = 2.600e-29
Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYGY 279
            L VK+ AY EI   +F+HL  LSL WHLKKK+G V+R+MDRGTDAA+ ++TYLFLYL+PA+ EC+A  I+F V+F  W L+ + F SL LYG+
Sbjct:   97 LDVKKVAYAEICSSTFSHLLNLSLHWHLKKKIGVVIRAMDRGTDAADTVVTYLFLYLLPALGECLAVCIIFLVHFQQWELSLLLFSSLLLYGF 189
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BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Match: A0A0G4FKX7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FKX7_VITBC)

HSP 1 Score: 119 bits (297), Expect = 3.600e-29
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYG 276
            ++V+Q AYIEIA+ +F HLH LSLQWHLKK+MGNV+RSMDRG DAAN+L+T+  LYL+P++AEC A  +VF ++F  W LA +   +L +YG
Sbjct:  288 IKVQQAAYIEIAQHTFQHLHNLSLQWHLKKRMGNVIRSMDRGCDAANSLMTWGVLYLIPSVAECFAVCVVFLLHFQKWELAALLAGALLIYG 379
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11064.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJY8_9PHAE2.660e-5297.83ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LQQ6_ECTSI7.550e-5297.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4N6_9STRA1.990e-4684.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UVY2_9STRA1.450e-3668.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UX91_HETAK4.380e-3364.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0K6S8V7_9ALVE5.310e-3266.67Uncharacterized protein n=2 Tax=Chromera velia CCM... [more]
A0A2R5G0X4_9STRA1.180e-3058.70ABC transporter ATP-binding protein n=1 Tax=Hondae... [more]
A0A7S2SDW9_9STRA1.410e-2959.78Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
I2CPG9_NANGC2.600e-2958.06Atp-binding cassette superfamily (Fragment) n=1 Ta... [more]
A0A0G4FKX7_VITBC3.600e-2958.70Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11064contigS-dermatodea_contig11064:625..1827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue6.6e-44
Seed eggNOG ortholog2880.D8LQQ6
Preferred namehmt1
KEGG koko:K05661
KEGG TC3.A.1.210
KEGG Pathwayko02010,map02010
GOsGO:0000041,GO:0000166,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006857,GO:0006950,GO:0007034,GO:0008144,GO:0008150,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0015399,GO:0015405,GO:0015440,GO:0015711,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030001,GO:0030554,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0032553,GO:0032555,GO:0032559,GO:0033220,GO:0034220,GO:0034486,GO:0034635,GO:0034775,GO:0035443,GO:0035639,GO:0035672,GO:0036094,GO:0036246,GO:0036249,GO:0042221,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0042939,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044604,GO:0046686,GO:0050896,GO:0051179,GO:0051181,GO:0051234,GO:0051716,GO:0055085,GO:0061687,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071585,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071993,GO:0071994,GO:0071995,GO:0071996,GO:0072337,GO:0072348,GO:0097159,GO:0097237,GO:0097367,GO:0097501,GO:0098588,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098754,GO:0098805,GO:0098849,GO:0098852,GO:1901265,GO:1901363,GO:1904680,GO:1990170,GO:1990748
EggNOG free text desc.heme-transporting ATPase activity
EggNOG OGsCOG5265@1,KOG0056@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.3893983-CDS-S-dermatodea_contig11064:624..7021622924185.3893983-CDS-S-dermatodea_contig11064:624..702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11064 625..702 -
1694079076.697752-CDS-S-dermatodea_contig11064:624..7021694079076.697752-CDS-S-dermatodea_contig11064:624..702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11064 625..702 -
1622924185.4016159-CDS-S-dermatodea_contig11064:1626..18271622924185.4016159-CDS-S-dermatodea_contig11064:1626..1827Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11064 1627..1827 -
1694079076.7117164-CDS-S-dermatodea_contig11064:1626..18271694079076.7117164-CDS-S-dermatodea_contig11064:1626..1827Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11064 1627..1827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11064.693.1prot_S-dermatodea_contig11064.693.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11064 625..1827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11064.693.1

>prot_S-dermatodea_contig11064.693.1 ID=prot_S-dermatodea_contig11064.693.1|Name=mRNA_S-dermatodea_contig11064.693.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
LRVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLI
TYLFLYLVPAIAECIATVIVFYVNFDDWRLATMAFVSLTLYGY
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mRNA from alignment at S-dermatodea_contig11064:625..1827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11064.693.1 ID=mRNA_S-dermatodea_contig11064.693.1|Name=mRNA_S-dermatodea_contig11064.693.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1203bp|location=Sequence derived from alignment at S-dermatodea_contig11064:625..1827- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTAAGGGTGAAGCAGCAGGCGTACATCGAAATCGCGGAGCAGTCTTTCGC
GCACCTGCACACGCTGTCCCTCCAGTGGCACCTGAAGAAGAAAATGGGGA
ACGTCGTGAGGTCCATGGACCGAGGCACGGACGCGGCGAACAACCTCATC
ACCTACCTCTTCCTCTACCTCGTTCCCGCCATCGCCGAGTGCATCGCCAC
GGTAGGTCGGCCCTTGGGGCATTGGGTGATTTGCTTGCGTTGCGTGGCTT
GCGCTGCGTGTGCTTTTTGTGGCGTGGCTGTTTAGGTAGGATTGGCTCGA
ACGCGTTTCGTGCCTTTTATTTCGTAGCCTTTTATTAGATGGGATTGGCT
TTCGTTTTATTGTTTTTTTGTTGCGTGTTTTTGTTTTTGTTTTTGTCCCG
CGTGTGCTTTGGCTGCTGCTGCACTTGCAATGGTCACTACTGGTACTTAT
GCTTCGAGGGGCTTTGTGCGAATAAGGTGTGACACGTCAGAATCACGCGC
AGAAGGGTGGGGGTTCTCTCATCTTCCCCCTACGAGACAAGACCCGGGCC
CTGTCCCGATGGTGATTTTGTTTACGGGTTGTACCATTTTGTGTGGTTCG
GTTTCTTTACTAGAAACACAGAACACAGAAAGGCCTTGTCCCGGTCATGA
GTTTAATGGGTTGGACACCTCCTGTACTTTGTTTCTGTACAAAAAACAAT
ACACAGAAATGTTCTGTCCCGATAAGTGTATGGGTTGGACTCTTCCTGTG
TTCGGGTTCTTTGCAAAAACAGAACACAGAAAGGCCCGGTCCGTCTCGAT
CATGACTTCATGGTTTGGACACTTGCTGTGTGTTTTTCTTCTTCTTTTGG
AAACAAAAAAACGCGTCCCAAGTTTGTCTGTAGCTCTAGCGAGTCAGCAG
TGGGAACGATCCCCATCGTTTTTGTTGAAGAAAAATGACCACCGCATGCC
ACCCACGGCAAGAGAGCGTGTGTGAGATGTACAGCACCCCGATACTTTTG
CGGGGCAGCAGGCTTCTCGATCATACAGCAGTTGATTTAAGTCGGAGATG
GTATGCGCACTCTCTGCAAGACGGGTTGTAGATATGACACGGAAGACTGT
TTGCACCCTCGCACTCGATCGCTAGGTTATCGTCTTCTACGTGAACTTTG
ACGACTGGAGGCTAGCAACTATGGCTTTCGTATCGCTAACGCTGTACGGT
TAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11064:625..1827-

>mRNA_S-dermatodea_contig11064.693.1 ID=mRNA_S-dermatodea_contig11064.693.1|Name=mRNA_S-dermatodea_contig11064.693.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig11064:625..1827- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTAAGGGTGAAGCAGCAGGCGTACATCGAAATCGCGGAGCAGTCTTTCGC
GCACCTGCACACGCTGTCCCTCCAGTGGCACCTGAAGAAGAAAATGGGGA
ACGTCGTGAGGTCCATGGACCGAGGCACGGACGCGGCGAACAACCTCATC
ACCTACCTCTTCCTCTACCTCGTTCCCGCCATCGCCGAGTGCATCGCCAC
GTTAAGGGTGAAGCAGCAGGCGTACATCGAAATCGCGGAGCAGTCTTTCG
CGCACCTGCACACGCTGTCCCTCCAGTGGCACCTGAAGAAGAAAATGGGG
AACGTCGTGAGGTCCATGGACCGAGGCACGGACGCGGCGAACAACCTCAT
CACCTACCTCTTCCTCTACCTCGTTCCCGCCATCGCCGAGTGCATCGCCA
CGGTTATCGTCTTCTACGTGAACTTTGACGACTGGAGGCTAGCAACTATG
GCTTTCGTATCGCTAACGCTGTACGGTTACGTTATCGTCTTCTACGTGAA
CTTTGACGACTGGAGGCTAGCAACTATGGCTTTCGTATCGCTAACGCTGT
ACGGTTAC
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