mRNA_S-dermatodea_contig11047.690.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11047.690.1
Unique NamemRNA_S-dermatodea_contig11047.690.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11047.690.1 vs. uniprot
Match: D8LIV2_ECTSI (Queuosine salvage protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV2_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.080e-19
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   58 FKPLDTAALRAVAVQACHRLAQSLGDGYHPHGVSLFLKRLGRRKEYKGAARFVPDESQAV 237
            FKP DTA LRAVAVQACHR+A+SLG  Y PH +SL+LKRL RRKEYK A RF+P ES+A+
Sbjct:  320 FKPKDTAELRAVAVQACHRMAESLGKDYRPHELSLYLKRLSRRKEYKDAPRFLPRESRAL 379
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11047.690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIV2_ECTSI3.080e-1971.67Queuosine salvage protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11047contigS-dermatodea_contig11047:556..5460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D8LIV2
EggNOG free text desc.Chromosome 9 open reading frame 64
EggNOG OGsKOG2524@1,KOG2524@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002560.1
Exons2
Model size299
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11047.690.1prot_S-dermatodea_contig11047.690.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11047 615..5412 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.187061-UTR-S-dermatodea_contig11047:555..6141622924185.187061-UTR-S-dermatodea_contig11047:555..614Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11047 556..614 -
1694079076.553434-UTR-S-dermatodea_contig11047:555..6141694079076.553434-UTR-S-dermatodea_contig11047:555..614Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11047 556..614 -
1622924185.2226188-UTR-S-dermatodea_contig11047:5412..54601622924185.2226188-UTR-S-dermatodea_contig11047:5412..5460Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11047 5413..5460 -
1694079076.587722-UTR-S-dermatodea_contig11047:5412..54601694079076.587722-UTR-S-dermatodea_contig11047:5412..5460Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11047 5413..5460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.1991847-CDS-S-dermatodea_contig11047:614..7521622924185.1991847-CDS-S-dermatodea_contig11047:614..752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11047 615..752 -
1694079076.563398-CDS-S-dermatodea_contig11047:614..7521694079076.563398-CDS-S-dermatodea_contig11047:614..752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11047 615..752 -
1622924185.209477-CDS-S-dermatodea_contig11047:5358..54121622924185.209477-CDS-S-dermatodea_contig11047:5358..5412Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11047 5359..5412 -
1694079076.5737646-CDS-S-dermatodea_contig11047:5358..54121694079076.5737646-CDS-S-dermatodea_contig11047:5358..5412Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11047 5359..5412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11047.690.1

>prot_S-dermatodea_contig11047.690.1 ID=prot_S-dermatodea_contig11047.690.1|Name=mRNA_S-dermatodea_contig11047.690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
MTVFKPLDTAALRAVAVQACHRLAQSLGDGYHPHGVSLFLKRLGRRKEYK
GAARFVPDESQAV*
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mRNA from alignment at S-dermatodea_contig11047:556..5460-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11047.690.1 ID=mRNA_S-dermatodea_contig11047.690.1|Name=mRNA_S-dermatodea_contig11047.690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4905bp|location=Sequence derived from alignment at S-dermatodea_contig11047:556..5460- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGGGGCTCCTTCAACCGCGGCGGCGACAGCCGCCGCCGCAGCGGCCAT
GACAGTTTTCAAGCCTCTGGATACAGCAGCGCTGAGAGCTGTCGCTGTTC
AGGTGCGTTCAGGGAATGCTGCGCAAACCTTGTTACCCCCGCCTCCGATA
GGGTGCCAAGGGTACTTGATGTATGCGAAACTGGTGTTACCACTTTCCTC
GGCCGAGCGTGCACGTTTCTCGGTCTCGTGGAGATGGATGCAGGAGTAGG
CCTTGGACAGCTTGATACATGCCTTTTTGTTAGAAGCTATCCGCCGGCGC
TTGGTGGCGTCGAGCTTTCTTCTTCGTCCCCTCGGTGAACTTCCTCGAGA
AGTTTTCCACATTGACCCTTTCGGAACCGAGTCTATAGTATATACTATTA
CGGAGGACCATAGTTAACTTTAGCAAGTCCAAATTTGCCACAAGTCTCAA
CCTAAAGAAAATGAAAATAGGCCGGACTTACCGAGATTTCATGGTCGATA
TTCATGAATGTGGCCTTAATCTCGTGTTTTTTGTTTTTCATGAGATTAAT
GTTGTTGTTTGGGTATTAATGGTCGGAATAGTTGGGTATTATTGGCCATG
AGATTTGGACCTGTTAACTATTAATATGCTCCTCCGTAACATATAATATA
TGGCATATAATAGTTGCGACGAATGTGGTGCCTAAGGGTAATGCGATGAC
GACTACACGCACGAGTGCACCGTGCATGCGGGCTAAGCGTGGCACGAGGC
CGCTGCTCTACCGCCAGTCCAAGGGCAAAGAGTAGCCGTGCTTGAGTAGC
TGTTCGACGCGAATAAAGGTGCTGGCACATGGCCCATTAACCCTTTTGAG
ACTGAGCCTGTTTTCGAGAGTAGGCCATCTGTGAGTATATATATATATAT
AGTAGCCACCGTTCGGGTACTGTACCTGTTCCATGTGAGGTACAGTGCGG
GCAGATGGCTATACACTGTTATCATGTTGTGTCGCCACAGCGCGTACCTG
TTCCATGTGATGTATAGTGTGGGCAGATGGCTATATAGTATTTAGCATAT
AGTAGCCACCGTTCGGGTACTGTACCTTTTCCATGTGAGGTATAGTGCGG
GCAGATGGCCTAACACCGAAAGCAGGCTCGGTCCCAAAAGGGATAAGGTG
GACTCATTACCAAAAGGGTGAAATTCGAGTTGATTATCTTGTTGTTCAGC
TGCTGACGGTGTTGTCGTGATCTCCACGGGGGTGCTTGGGTTTTACATGC
TTAAGCTTCCATCGAGTGTGTCTGGAAAGTTGAACGGGCGCTCGGCGTGT
GCGAGAGGTATCTAGGTGGAAGGACTAAAACCAACTTTCGGACGAGGCGC
GCACGTTACTGTTCTGCCGCCAACGTGAACTTTAAAGAAGCTTTCAAGTT
GCAGCTACTCTTACCCACCTGATCGCCTCGATTGATCGCGAGTTAGCGCT
GATGGAAGCGCATGCTCTTTGAAAGGGGCAATCAGCCATAACTCTGGCAT
CGATAAGTGTACGTACAGTTGTGATCACGTACCTGTATTATCTCTATATA
TCTTAATTTTTGCAACGGCTGCTAGGAAGTCAGAGGGGGGAGCAATCAGC
CATAGCTCTGATACCCATAACCTGACCTCCAATGGCTCCTACCATACGTA
CAAAACAATATGACGGTGGATACACATTACAATAGGAAGGTACACAGCAA
ATACACGACCAAATGTCCCAACAGGTACATCCAACATAACAAACTATATT
TTAATACGGTCTAGCCTTCCAACATCGGCAATGTTCCGGCCTGAAATTTG
TAAAATCAAACACTGAAACAAATTGCAAGAGGTTTTGGCCAACGAGTAAA
AAAATCAAAGCGAATGCGCTTTTCAGCACAAATTTTCCCCTGATTTACTG
TGTACACCCGTATGAGTCGGACAGTCCGAAGTTGTCATCGAACCAAGGAC
GGGCGTTATTGCCGTGGAGTTTCCCGAGCCCCCTTTCCGTACCCGTGAAT
TTTTCGCTCGCTGTTTCACCGGGCGAGTACGGCCGTGGTTCCGCTGCGTC
GGGCTTGTGCATGCATGACCATGCGTCGAGATTGAGGTCGAGCGAGCATC
GGCACAAACAAACGTGCTTTAACCCTTTTGGGACTAAGGCTGTTTTTGGG
GAACTGCTTGCTATTATTTACCCTTTTGGGACTAAGCCTGGGGACGAAAC
ATGGTTTCGGGTACCTGTTGGCGCTACCATAATAGCAAACAGCTACCCGA
AAACAGCCTTTGTCCCGAAACACAAGGGTATATAATAATAGCAAACAGTT
ACCCGATAACAGGTTATTCCCAAAAGGGTTAAGGAGCACCGACGATACCA
ACCATTACGGAGCTACACACTTGATAAAAACAAAAAATCTGTGAAACAAA
CTCCTCAACAGTAAAAAAACAAGTTAGGAAAATGTCAGCCTGGGCCTTAG
AGCTCGACAAGCATGTTCAAATCTCGCGGCCAAGATTATTGTGTTGTATA
GAAAAGTTACCTCAAGACCTTCCTGGACCATGTTCTACTACATGTGAGGG
TATATTCTCTCGGGCGGCCGACGAATCAACCTCAGTTTTGTGTACAGCGA
GGTCCACCCGGGCCCTGTCCCGATGAGTCATGGATATATTAATTTGCCCT
CCGACAATTTGCAGACTCGGAAATTGGGTAGTCGTAAAACAAACTCCAGG
GGAATATTGCTNNNNNNNNNNGTAACTAATTTCCTATCACCATATCCCAT
ATCCCAGCTCATTTCTTCTCAAATTTGCCTTACACAGAGTATATATGAGT
CATGGATTGTAAAATTTCTGTTTTCTGTGTCTTTCTAAAACATAATTCTG
AAGAAGATGCTCTGGGCCATTGGTAGTTTGTTTGCGACGTAATGTTTGGG
AAGTTTGAGTCCGTTGTTTGCGCCGAATGAGGTCAGGGTTTAGTTTTTAC
GGAGGGTACACAGCAATCAGGACCAATTTTTCTGCCGAAAATAATTTCTG
CCGAATAGCGTGTCCAAGTTTTGCTTTTGATTCTTTGGCCCGAACAACTT
CTAGCTTTTGTTTTTATTGTTGATGAGACATTCAAGGCCGAAAAATCGCA
GATGTGTTAGTAAGGCCGGGCCAGATTGATTTCTGCTTTGTTTTGCTGGG
AATGCTATTACGGAGATACACAGTAAAAATCAGGACCAAATCTCATGACC
ATGCGTACCCCATCTATTCCGACCATTGAATACCCAAAAAAAAACAACCT
CACGAAAACAAAAAATGGCCATACACAAGAACATCGACCTTGAATTCTCG
ATGATTCCAGCCTATTTGGATTTTTCTAGGTTGAGACTTGTGGCAAATGT
GGACCTGTTAACTATGGTATAGTCCCCCGTAATATATTTTTTTCCGCATT
TGCTCCTAGTTCACTGTGTACTGTACCTCTGTAAGTAGGGTTAGTATGGC
GCAGACGCTTGGACGCACCAGTGCACCAACGTGTATGCAGGCAAGCTAAG
GGTGGCAGATCTAGCATCAACCGCCGTGTACGCAGGCAAGCTAAGCGTGG
CAGATGTATTACGGGGGACCATAGTTAATAGGTCAAAATTTGCCACAATT
CTCAACCGGGAAAAATCAAAATTGGCTGGAATTATTATATCCAGATTTCA
AGGTCGACGTTATTGTGTATGGCCATATCTCGTGCATTTTGTTTTGTTTT
TCTTGAGATTTTTGTTGTTGCTTGGGTCTTCATGGTCGGAATAGTTGGGT
ATTCATGGTCATAAGATTTAGTCCTGATTACTTGATTACTCTGTACCTCC
GTAATAGTATCACTCTTTCCACCGCCACGACGTAGGGCGAGGGGTGGCCA
AACGTGCGGTCACAAATCGACGTGAAGCACGGTGCGCGGGCAGATGGCCT
CACGCTGGGGACTATAAACTGTGCTCCACCGCAGAGTACACGTTGTCGCG
GTCCTGTACCTAGATAAATGAAACCAGTATTGTATACACCCCCCCCCCTC
AATGTCAACCAACAACATCGACCCGTTGCTGGTTGAACGCTTTCCTGCGT
GCACATCCACGAACACGCTTACCCAATTTGGGGGACTGATTCTGTTTTCG
GGGTTGGGGGACTGATTCTGTCTGAATTGTGTTTCACACCGAAAAGGTAT
AGTCACCGAACGGTGGCTACCCCTAGACGTAGGTGCGGTGGAAAAGGGAG
AAACCCTCCCGCGCTCATTATGGGGGTACAGAGTAACCAGGACAAAAATA
TGTCTGCTGACTATTGTAGCTTATGCAATTCTTGTCATTTTTAATGTTGG
CCCGAACGAAACACCATTCGTACGAAATCTTTCATTAGTTTTTGTTTTTC
TTCACACTTCATCAGGCCGGGAGTTTTGTTTTTTAGGCCAGACCAGCTTG
ATTTTGCGAATGTATTTTGTCGGGCATGCTGCTTGCTGTTTTAGCAAATT
TGATCCTGATTGCTATTACACTATTTTTACCTTTGTGCCTCTGTAACAGC
TCGCCGGCACGGTGCGCTTGTGCTTGTGGCCGTCGACGTAGTACCCGCAG
TGACAACTGTTTCACGAGAGACGCCCTCAGTCCCAAAAAAAACGCCCAAG
AAGTACGAGCGGAGTGAGCTGCCCATTCGCACGTGACCGCCTGTCGCCCT
GATCCACACCCGTTCCCTCCATGCCCGCCGTTGCATGTTTTTCGCCTTTT
ATTATTAGGCGTGCCACCGATTGGCACAATCCCTCGGGGACGGCTACCAT
CCTCACGGAGTGTCTCTGTTTCTCAAGAGGCTGGGCAGACGGAAGGAATA
CAAGGGAGCGGCTCGCTTCGTGCCTGACGAATCTCAAGCTGTGTGATCGG
ACCGGCGGATACCGGCCGCGGCCATGATTCCATGATGCGCGACGCGATGG
GACTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11047:556..5460-

>mRNA_S-dermatodea_contig11047.690.1 ID=mRNA_S-dermatodea_contig11047.690.1|Name=mRNA_S-dermatodea_contig11047.690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig11047:556..5460- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAGTTTTCAAGCCTCTGGATACAGCAGCGCTGAGAGCTGTCGCTGT
TCAGATGACAGTTTTCAAGCCTCTGGATACAGCAGCGCTGAGAGCTGTCG
CTGTTCAGGCGTGCCACCGATTGGCACAATCCCTCGGGGACGGCTACCAT
CCTCACGGAGTGTCTCTGTTTCTCAAGAGGCTGGGCAGACGGAAGGAATA
CAAGGGAGCGGCTCGCTTCGTGCCTGACGAATCTCAAGCTGTGTGAGCGT
GCCACCGATTGGCACAATCCCTCGGGGACGGCTACCATCCTCACGGAGTG
TCTCTGTTTCTCAAGAGGCTGGGCAGACGGAAGGAATACAAGGGAGCGGC
TCGCTTCGTGCCTGACGAATCTCAAGCTGTGTGA
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