mRNA_S-dermatodea_contig11045.689.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11045.689.1
Unique NamemRNA_S-dermatodea_contig11045.689.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.000e-17
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGIDAISTGDPNVLVNGIDYDGRICG 144
            +RRCTDVLF+LVL+L+W AMTYLG+D IS G+P++L+NGIDYDGRICG
Sbjct:   13 DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICG 60
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.000e-17
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGIDAISTGDPNVLVNGIDYDGRICG 144
            +RRCTDVLF+LVL+L+W AMTYLG+D IS G+P++L+NGIDYDGRICG
Sbjct:   29 DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICG 76
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-12
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGIDAISTGDPNVLVNGIDYDGRICG 144
             R+CTD LF+LVL+  W AMT +GI A+ TG+P+ LVNGIDY GRICG
Sbjct:   20 KRKCTDTLFMLVLVCCWIAMTVIGIKAVQTGNPDRLVNGIDYQGRICG 67
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A7S4J5U8_9STRA (Choline transporter-like protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5U8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.640e-10
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGIDAISTGDPNVLVNGIDYDGRICG 144
            NRRCTDVL  L+L+L+WAAMT LG  A+S GD  V+V  +DYDG ICG
Sbjct:   23 NRRCTDVLCSLLLVLTWAAMTGLGFYAVSNGDYRVIVYPMDYDGNICG 70
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A6V1T854_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T854_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 3.050e-10
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGIDAISTGDPNVLVNGIDYDGRICG 144
            NR+CTD LF L+L+ SWAAMTYLG  ++  GD  V   G+ YDG +CG
Sbjct:   20 NRKCTDFLFALLLIASWAAMTYLGYQSMQDGDITVFTTGMQYDGSVCG 67
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A7S3Y6D2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D2_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGI--------DAISTGDPNVLVNGIDYDGRICG 144
             R+CTD+LFLL+++  W AMT+LG         D +  G+P  L+NGIDY+G ICG
Sbjct:   82 KRKCTDILFLLLIIACWVAMTFLGFVVTGAIPSDTLDAGNPERLINGIDYEGNICG 137
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A7S3Y650_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y650_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 2.730e-9
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGI--------DAISTGDPNVLVNGIDYDGRICG 144
             R+CTD+LFLL+L+  W AMT+LG         D +  G+P  L+NGIDY+G ICG
Sbjct:   30 KRKCTDILFLLLLIACWVAMTFLGFVVCGVIPNDNLEPGNPQRLINGIDYNGHICG 85
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A7S2UXN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXN4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.760e-9
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGIDAISTGDPNVLVNGIDYDGRICG 144
            +R+CTDVL LLVLL  W  MTYLG +A+  G P  L+   DY GR CG
Sbjct:    1 DRKCTDVLMLLVLLCCWGVMTYLGWEALERGKPEFLIYQPDYKGRACG 48
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A835Z9G9_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.440e-8
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGIDAIS--------TGDPNVLVNGIDYDGRICG 144
            +RRCTD+LF L+L+ SWAAMT+LG+  +          G+P  LVNGID  G ICG
Sbjct:   30 HRRCTDMLFSLLLIASWAAMTFLGLVVVGIIDSPEFEAGNPKRLVNGIDNQGHICG 85
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BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Match: A0A7R9YAE8_9STRA (Choline transporter-like protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAE8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.560e-8
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 NRRCTDVLFLLVLLLSWAAMTYLGIDAISTGDPNVLVNGIDYDGRICG 144
            +R+ TD  FLL+++  W AMT +GIDAI+ G+   L+NG+D +GRICG
Sbjct:  112 SRKTTDCFFLLLIIAGWIAMTAIGIDAITRGNLEELLNGVDSEGRICG 159
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11045.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L007_9PHAE2.000e-1775.00Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D8LIJ7_ECTSI2.000e-1775.00Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A835Z6J7_9STRA1.100e-1264.58Choline transporter-like protein n=1 Tax=Tribonema... [more]
A0A7S4J5U8_9STRA1.640e-1064.58Choline transporter-like protein n=1 Tax=Odontella... [more]
A0A6V1T854_HETAK3.050e-1056.25Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S3Y6D2_HETAK1.460e-948.21Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S3Y650_HETAK2.730e-950.00Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S2UXN4_9STRA2.760e-956.25Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835Z9G9_9STRA2.440e-851.79Choline transporter-like protein n=1 Tax=Tribonema... [more]
A0A7R9YAE8_9STRA4.560e-852.08Choline transporter-like protein n=1 Tax=Pinguioco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11045contigS-dermatodea_contig11045:712..855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog2880.D8LIJ7
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categorysignal peptide
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.1421943-CDS-S-dermatodea_contig11045:711..8551622924185.1421943-CDS-S-dermatodea_contig11045:711..855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11045 712..855 -
1694079076.541577-CDS-S-dermatodea_contig11045:711..8551694079076.541577-CDS-S-dermatodea_contig11045:711..855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11045 712..855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11045.689.1prot_S-dermatodea_contig11045.689.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11045 712..855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11045.689.1

>prot_S-dermatodea_contig11045.689.1 ID=prot_S-dermatodea_contig11045.689.1|Name=mRNA_S-dermatodea_contig11045.689.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=48bp
NRRCTDVLFLLVLLLSWAAMTYLGIDAISTGDPNVLVNGIDYDGRICG
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mRNA from alignment at S-dermatodea_contig11045:712..855-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11045.689.1 ID=mRNA_S-dermatodea_contig11045.689.1|Name=mRNA_S-dermatodea_contig11045.689.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at S-dermatodea_contig11045:712..855- (Saccorhiza dermatodea SderLu1190fm monoicous)
AATAGGCGTTGCACCGATGTCCTCTTTCTACTGGTGCTGCTGTTGTCATG
GGCAGCCATGACGTACCTGGGAATCGACGCGATATCAACCGGGGACCCTA
ACGTCCTTGTGAACGGCATAGACTACGATGGTCGCATCTGCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11045:712..855-

>mRNA_S-dermatodea_contig11045.689.1 ID=mRNA_S-dermatodea_contig11045.689.1|Name=mRNA_S-dermatodea_contig11045.689.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig11045:712..855- (Saccorhiza dermatodea SderLu1190fm monoicous)
AATAGGCGTTGCACCGATGTCCTCTTTCTACTGGTGCTGCTGTTGTCATG
GGCAGCCATGACGTACCTGGGAATCGACGCGATATCAACCGGGGACCCTA
ACGTCCTTGTGAACGGCATAGACTACGATGGTCGCATCTGCGGCAATAGG
CGTTGCACCGATGTCCTCTTTCTACTGGTGCTGCTGTTGTCATGGGCAGC
CATGACGTACCTGGGAATCGACGCGATATCAACCGGGGACCCTAACGTCC
TTGTGAACGGCATAGACTACGATGGTCGCATCTGCGGC
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