mRNA_S-dermatodea_contig11041.688.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11041.688.1
Unique NamemRNA_S-dermatodea_contig11041.688.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: D7FQZ3_ECTSI (Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ3_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.840e-24
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 RYTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            +YT+GT VQI+P++NTRLSGLYTSGG FCTQCEAEGFRRITFAQDRPDVMSTFSV
Sbjct:  262 KYTVGTVVQIAPKENTRLSGLYTSGGNFCTQCEAEGFRRITFAQDRPDVMSTFSV 316
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: A0A6H5KYN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.360e-20
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 RYTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDV 147
            +YT+GT VQI+P++NTRLSGLYTSGG FCTQCEAEGFRRITFAQDRPDV
Sbjct:   61 KYTVGTVVQIAPKENTRLSGLYTSGGNFCTQCEAEGFRRITFAQDRPDV 109
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: A0A3N9U4W6_9GAMM (Aminopeptidase N n=15 Tax=Halomonadaceae TaxID=28256 RepID=A0A3N9U4W6_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 3.900e-19
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 YTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            + L T V+ISPE NT LSGLY SGGMFCTQCEAEGFRRITF  DRPDVM+TFS 
Sbjct:   93 FVLDTEVEISPEDNTALSGLYRSGGMFCTQCEAEGFRRITFYPDRPDVMATFST 146
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: E1V6U2_HALED (Aminopeptidase N n=9 Tax=Halomonas TaxID=2745 RepID=E1V6U2_HALED)

HSP 1 Score: 88.6 bits (218), Expect = 5.330e-19
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    4 YTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            ++L T V+ISPE+NT L GLY SGGMFCTQCEAEGFRRITF  DRPDVM+TFS 
Sbjct:   93 FSLDTEVEISPEENTALEGLYRSGGMFCTQCEAEGFRRITFYPDRPDVMATFST 146
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: A0A354CC25_9PROT (Aminopeptidase N (Fragment) n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A354CC25_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 6.020e-19
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 YTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            + L T V ISPEKNT LSGLY SGG FCTQCEAEGFRRIT+  DRPDVMSTFSV
Sbjct:   94 FELTTEVWISPEKNTELSGLYMSGGRFCTQCEAEGFRRITYWPDRPDVMSTFSV 147
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: A0A2E7F3W6_9PROT (Aminopeptidase N n=3 Tax=Ponticaulis TaxID=1123044 RepID=A0A2E7F3W6_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 7.280e-19
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 YTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            + L T V ISPEKNT LSGLY SGG FCTQCEAEGFRRIT+  DRPDVMSTFSV
Sbjct:   94 FELTTEVWISPEKNTELSGLYMSGGRFCTQCEAEGFRRITYWPDRPDVMSTFSV 147
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: A0A291P4K8_9GAMM (Aminopeptidase N n=13 Tax=Halomonas TaxID=2745 RepID=A0A291P4K8_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 9.940e-19
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 RYTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            R+ L T V+I+PE NT L GLY SGGMFCTQCEAEGFRRITF  DRPDVM+TFS 
Sbjct:   92 RFLLDTEVEIAPEDNTALEGLYRSGGMFCTQCEAEGFRRITFYPDRPDVMATFST 146
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: A0A0D1L950_PSEPU (Aminopeptidase N n=11 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0D1L950_PSEPU)

HSP 1 Score: 87.0 bits (214), Expect = 1.850e-18
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 RYTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            R+TL T+V+I PE NT L GLY SGGMFCTQCEAEGFR+IT+  DRPDVMSTF+ 
Sbjct:   95 RFTLDTSVKIHPETNTALEGLYKSGGMFCTQCEAEGFRKITYYLDRPDVMSTFTT 149
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: A0A2D9RDJ3_9PROT (Aminopeptidase N n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D9RDJ3_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 2.530e-18
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    4 YTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            + L T V ISPEKNT LSGLY SGG FCTQCEAEGFRRITF  DRPDVM+ FSV
Sbjct:   54 FELSTEVWISPEKNTELSGLYMSGGRFCTQCEAEGFRRITFWPDRPDVMAEFSV 107
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BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Match: A0A2E9NS96_9GAMM (Aminopeptidase N (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9NS96_9GAMM)

HSP 1 Score: 83.2 bits (204), Expect = 3.000e-18
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 RYTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 165
            R+TL    QISPE NT L GLY S GMFCTQCEAEGFRRIT+  DRPDVMS F+ 
Sbjct:   97 RFTLEVVTQISPEANTALEGLYLSNGMFCTQCEAEGFRRITYYPDRPDVMSIFTT 151
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11041.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ3_ECTSI2.840e-2487.27Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KYN1_9PHAE2.360e-2085.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3N9U4W6_9GAMM3.900e-1977.78Aminopeptidase N n=15 Tax=Halomonadaceae TaxID=282... [more]
E1V6U2_HALED5.330e-1975.93Aminopeptidase N n=9 Tax=Halomonas TaxID=2745 RepI... [more]
A0A354CC25_9PROT6.020e-1979.63Aminopeptidase N (Fragment) n=1 Tax=Hyphomonadacea... [more]
A0A2E7F3W6_9PROT7.280e-1979.63Aminopeptidase N n=3 Tax=Ponticaulis TaxID=1123044... [more]
A0A291P4K8_9GAMM9.940e-1974.55Aminopeptidase N n=13 Tax=Halomonas TaxID=2745 Rep... [more]
A0A0D1L950_PSEPU1.850e-1872.73Aminopeptidase N n=11 Tax=Pseudomonadaceae TaxID=1... [more]
A0A2D9RDJ3_9PROT2.530e-1877.78Aminopeptidase N n=1 Tax=Ponticaulis sp. TaxID=202... [more]
A0A2E9NS96_9GAMM3.000e-1870.91Aminopeptidase N (Fragment) n=1 Tax=Gammaproteobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11041contigS-dermatodea_contig11041:262..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog2880.D7FQZ3
KEGG rclassRC00096,RC00141
KEGG koko:K01256,ko:K13725
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,map00480,map01100
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.metalloaminopeptidase activity
EggNOG OGsCOG0308@1,KOG1046@2759
EC3.4.11.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.1094525-CDS-S-dermatodea_contig11041:261..4561622924185.1094525-CDS-S-dermatodea_contig11041:261..456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11041 262..456 +
1694079076.5294423-CDS-S-dermatodea_contig11041:261..4561694079076.5294423-CDS-S-dermatodea_contig11041:261..456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11041 262..456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11041.688.1prot_S-dermatodea_contig11041.688.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11041 262..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11041.688.1

>prot_S-dermatodea_contig11041.688.1 ID=prot_S-dermatodea_contig11041.688.1|Name=mRNA_S-dermatodea_contig11041.688.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
RYTLGTTVQISPEKNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVM
STFSVGFCKLKGGT*
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mRNA from alignment at S-dermatodea_contig11041:262..456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11041.688.1 ID=mRNA_S-dermatodea_contig11041.688.1|Name=mRNA_S-dermatodea_contig11041.688.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at S-dermatodea_contig11041:262..456+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTACACGTTGGGCACGACGGTGCAGATTTCTCCAGAGAAGAACACCCG
GCTGTCGGGGTTGTACACCTCGGGAGGCATGTTTTGCACCCAGTGCGAGG
CGGAAGGGTTCCGCCGCATCACTTTCGCTCAGGACCGCCCTGACGTCATG
TCGACCTTCTCGGTGGGTTTTTGTAAATTGAAAGGAGGAACTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11041:262..456+

>mRNA_S-dermatodea_contig11041.688.1 ID=mRNA_S-dermatodea_contig11041.688.1|Name=mRNA_S-dermatodea_contig11041.688.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig11041:262..456+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTACACGTTGGGCACGACGGTGCAGATTTCTCCAGAGAAGAACACCCG
GCTGTCGGGGTTGTACACCTCGGGAGGCATGTTTTGCACCCAGTGCGAGG
CGGAAGGGTTCCGCCGCATCACTTTCGCTCAGGACCGCCCTGACGTCATG
TCGACCTTCTCGGTGGGTTTTTGTAAATTGAAAGGAGGAACTTAAAGGTA
CACGTTGGGCACGACGGTGCAGATTTCTCCAGAGAAGAACACCCGGCTGT
CGGGGTTGTACACCTCGGGAGGCATGTTTTGCACCCAGTGCGAGGCGGAA
GGGTTCCGCCGCATCACTTTCGCTCAGGACCGCCCTGACGTCATGTCGAC
CTTCTCGGTGGGTTTTTGTAAATTGAAAGGAGGAACTTAA
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