mRNA_S-dermatodea_contig11040.687.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11040.687.1
Unique NamemRNA_S-dermatodea_contig11040.687.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.280e-32
Identity = 66/79 (83.54%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:    2 ELVGADMASAVAASVSSLEVLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTDRPSL 238
            EL+G++ ASAVAAS+SSLEVL V+KRRVRR+PPAPFITSTLQQES+RKLR+G  QTMRAAQALYEAG+ITYMRTDRPSL
Sbjct:   56 ELLGSEKASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSL 134
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 7.530e-32
Identity = 66/79 (83.54%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:    2 ELVGADMASAVAASVSSLEVLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTDRPSL 238
            EL+G++ ASAVAAS+SSLEVL V+KRRVRR+PPAPFITSTLQQES+RKLR+G  QTMRAAQALYEAG+ITYMRTDRPSL
Sbjct:  355 ELLGSEKASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSL 433
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: UPI001ADF9256 (type I DNA topoisomerase n=2 Tax=Roseomonas TaxID=125216 RepID=UPI001ADF9256)

HSP 1 Score: 87.4 bits (215), Expect = 2.440e-18
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:   14 ADMASAVAASV----SSLEVLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTDRPSL 238
            AD ASA+AA      ++  V SVEK+R RR PP PF+TSTLQ E++RKL MGA QTMR AQ LYEAG ITYMRTD  S+
Sbjct:  226 ADAASALAAKALAEATTYAVASVEKKRTRRNPPPPFMTSTLQMEASRKLGMGAQQTMRTAQQLYEAGHITYMRTDGVSM 304
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: A0A6P0TUZ9_9CYAN (DNA topoisomerase (Fragment) n=2 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0TUZ9_9CYAN)

HSP 1 Score: 87.0 bits (214), Expect = 3.290e-18
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:   59 VLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTD 226
            V SVE+R V+RKP  PF TSTLQQESNRKLRMGA QTMR AQ+LYE GFITYMRTD
Sbjct:  269 VNSVEERAVKRKPSPPFTTSTLQQESNRKLRMGARQTMRTAQSLYEQGFITYMRTD 324
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: A0A6P0PG72_9CYAN (DNA topoisomerase 1 n=18 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0PG72_9CYAN)

HSP 1 Score: 86.3 bits (212), Expect = 6.210e-18
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:   59 VLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTD 226
            V +VE+R V+RKP  PF TSTLQQESNRKLRMGA QTMR AQ+LYE GFITYMRTD
Sbjct:  269 VSNVEERAVKRKPSPPFTTSTLQQESNRKLRMGARQTMRTAQSLYEQGFITYMRTD 324
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: A0A848E823_9PROT (DNA topoisomerase 1 n=3 Tax=Roseomonas TaxID=125216 RepID=A0A848E823_9PROT)

HSP 1 Score: 85.1 bits (209), Expect = 1.580e-17
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 2 
Query:   59 VLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTDRPSL 238
            V SVEK+RVRR PP PF+TSTLQ E++RKL MGA QTMR AQ LYEAG ITYMRTD  S+
Sbjct:  245 VASVEKKRVRRNPPPPFMTSTLQMEASRKLGMGAQQTMRTAQQLYEAGHITYMRTDGVSM 304
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: A0A7S0U7N6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U7N6_HEMAN)

HSP 1 Score: 81.6 bits (200), Expect = 2.080e-17
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:   20 MASAVAASVSSLEVLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTDRPSL 238
            +A +++A      V  +E +R +R+PP PFITSTLQQE NRKL M + +TMR AQ LYE GFITYMRTD P L
Sbjct:    7 LAESLSAPAVKWVVERLETKRQKRRPPVPFITSTLQQEGNRKLGMSSKETMRVAQTLYEGGFITYMRTDNPVL 79
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: A0A511YXZ5_9CELL (DNA topoisomerase 1 n=1 Tax=Actinotalea fermentans TaxID=43671 RepID=A0A511YXZ5_9CELL)

HSP 1 Score: 84.7 bits (208), Expect = 2.160e-17
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   29 AVAASVSSLEVLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTDRPSL 238
            A A   ++  VL VE +   RKP APF TSTLQQE+ RKLRMG+ QTMR AQALYE G+ITYMRTD P+L
Sbjct:  266 ASALEAAAFSVLEVETKPYTRKPAAPFTTSTLQQEAARKLRMGSRQTMRVAQALYENGYITYMRTDSPAL 335
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BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: A0A6I3FPS5_9ACTN (DNA topoisomerase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I3FPS5_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 2.890e-17
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 2 
Query:   20 MASAVAASVSSLEVLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTDRPSL 238
            +A+AV     ++EV+SVE +   R+P APF TSTLQQE++RKLRMGA QTM  AQ LY+ G+ITYMRTD P+L
Sbjct:  260 LAAAVGVPGVNIEVVSVEAKPSTRRPAAPFTTSTLQQEASRKLRMGAKQTMDTAQGLYQEGYITYMRTDSPTL 332
[Close]
BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Match: A0A7X4DR87_9RHOB (Type I DNA topoisomerase n=1 Tax=Boseongicola sp. SB0675_bin_26 TaxID=2604849 RepID=A0A7X4DR87_9RHOB)

HSP 1 Score: 84.3 bits (207), Expect = 2.920e-17
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 2 
Query:   47 SSLEVLSVEKRRVRRKPPAPFITSTLQQESNRKLRMGAAQTMRAAQALYEAGFITYMRTD 226
            S L V SVE + V RKPPAPFITSTLQQE++RKL  GA QTM+AAQ LYEAG ITYMRTD
Sbjct:   69 SVLSVTSVEAKPVTRKPPAPFITSTLQQEASRKLGFGAKQTMQAAQRLYEAGHITYMRTD 128
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11040.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCV2_9PHAE7.280e-3283.54TOP1Ac domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDU2_ECTSI7.530e-3283.54DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
UPI001ADF92562.440e-1863.29type I DNA topoisomerase n=2 Tax=Roseomonas TaxID=... [more]
A0A6P0TUZ9_9CYAN3.290e-1880.36DNA topoisomerase (Fragment) n=2 Tax=unclassified ... [more]
A0A6P0PG72_9CYAN6.210e-1878.57DNA topoisomerase 1 n=18 Tax=Oscillatoriales TaxID... [more]
A0A848E823_9PROT1.580e-1773.33DNA topoisomerase 1 n=3 Tax=Roseomonas TaxID=12521... [more]
A0A7S0U7N6_HEMAN2.080e-1757.53Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A511YXZ5_9CELL2.160e-1764.29DNA topoisomerase 1 n=1 Tax=Actinotalea fermentans... [more]
A0A6I3FPS5_9ACTN2.890e-1760.27DNA topoisomerase (Fragment) n=1 Tax=Actinomycetia... [more]
A0A7X4DR87_9RHOB2.920e-1775.00Type I DNA topoisomerase n=1 Tax=Boseongicola sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11040contigS-dermatodea_contig11040:3568..5719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924185.0661876-CDS-S-dermatodea_contig11040:3567..37511622924185.0661876-CDS-S-dermatodea_contig11040:3567..3751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11040 3568..3751 +
1694079076.5088344-CDS-S-dermatodea_contig11040:3567..37511694079076.5088344-CDS-S-dermatodea_contig11040:3567..3751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11040 3568..3751 +
1622924185.0777717-CDS-S-dermatodea_contig11040:5663..57191622924185.0777717-CDS-S-dermatodea_contig11040:5663..5719Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11040 5664..5719 +
1694079076.519232-CDS-S-dermatodea_contig11040:5663..57191694079076.519232-CDS-S-dermatodea_contig11040:5663..5719Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11040 5664..5719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11040.687.1prot_S-dermatodea_contig11040.687.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11040 3568..5719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11040.687.1

>prot_S-dermatodea_contig11040.687.1 ID=prot_S-dermatodea_contig11040.687.1|Name=mRNA_S-dermatodea_contig11040.687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
GARWSRHGVRRSGIGILPGGPLCGKEACQEEAPRALHNVHPAAGIEPEAQ
DGRRADHESCSGFIRGGFHHLHENRPAQP*
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mRNA from alignment at S-dermatodea_contig11040:3568..5719+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11040.687.1 ID=mRNA_S-dermatodea_contig11040.687.1|Name=mRNA_S-dermatodea_contig11040.687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2152bp|location=Sequence derived from alignment at S-dermatodea_contig11040:3568..5719+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCTCGTTGGAGCAGACATGGCGTCCGCCGTAGCGGCATCGGTATCCT
CCCTGGAGGTCCTCTCTGTGGAAAAGAGGCGTGTCAGGAGGAAGCCCCCC
GCGCCCTTCATAACGTCCACCCTGCAGCAGGAATCGAACCGGAAGCTCAG
GATGGGCGCCGCGCAGACCATGAGAGCTGCTCAGGTGTGGGAGGGAGATG
GTGACGTTTGTTTATCGCTCTTCGGCATTTATTCACGAATGCAAGTAATG
GTATTTTTTTGTGTAAGTGAGTTATGCGCGTTTGTATGTTTATGTGTATG
TGTGTGAGTTTTCTTTTTCTTTTTCTTTTTTGCATTTGTTTTTCTTACTT
TTGTTGTTGTTGTCATGCTTGTGCGTTTTTGTATAATAACGTACGTTGAC
ATTTTTGTGTTTGGTATGTATGTATGTGTGTACATTATTTTCATGTGCGG
TGTAGCTCAAAATCAATTCGATGGTCACAGCGAAAGGCGCCCCCGCCCTC
GGGTAATCAATGCCCCCCCAACCTTTTATTTTCCGTCTCCACAGCCACTC
CACGAAATTCCGACTAGAGTTGGGGAAATGCCACGGACATTATAGAAACA
CTGTTAAATTGCATGCACTTCTCATAGGATTGGGGAGAAAAAATCTGGTG
TTCTCAACGATCATTATTTTTGAAGGGATCCCTCTCCGGGGGTGCATATC
ATACACTCCGCAGTGAAAGCTCTATACGGTAATGACATGCGACAGCTAAG
AGTCGCTATTGTTTGGACCCCCCCCCCTCGCGCCCTCCCGAAAGGAGGAA
TACGTTGAAAACTTAACGAGCCGTTGGATCCATCCGTTGCCAATGAGCAA
GGTTGCTCAGGCCAACCCTATAGAGGTTACATTGCGTATGAGCCTCCCAT
TGCAGAACTGCCAATGTCTTGGCGATGTGGCTGTCGTACCCCCCCCCCCC
CCCCCCCGCCCCTCCCCCTCGCCACCTCGCAGTTTTTTGTGCTGTTTACG
AACTGAGTCCCGAGCCCCATTGGTTAAATAAAGTTCGTACATTATTGTCA
TGTTTTTTCCCATCGTAGCCTTTTTCTGGTTGGACGGAATGCCCGCCAGC
TCGAGCGCTATTGTTGGACGCGCCAAAAAGCACGCAATTGGGGGGTTTCT
GTCTGGAAGCGAGGCGATACTTGCGGCACGGTATTTGCGGCGGTTGTGAC
TAATTTCGTCGACGCCGTCTGTCGTGCCGTCCGTAGTCAGCAGGGTCCAT
CCCATCTCTCCTCTCACCGGTTCTTGCCTTCCTTTTTTTATTGAGCGAAA
AACGATGCACTGTAAGCGTGCCGTATCAGCGCGCGCCCGACCGGGGTTCG
TTGCCCCCTCTACGACGAGAAACCCAGTGAATCGAGGAAGAAGGATCACC
TCGAAGCAGCACGCGATTACGGTGGCATCCGTCGGGACGATCTCGCCGCA
CTGCAACAAGCATGAACGCTGTTATGTAGTGTATCTGTTGCCGGCGGGGA
GAGATGGGCAGACTTTCCCTTGTGACCGCAGATGAGAATGTTGGGATGGT
ATCACGGGATAGGCATATAAGGCCGGTCGGTCGGTTGGTCGGTCGGACGG
TCGGTCGGACGGGTGGTCGGTCGATTCGTCGTCGGAGGTGTAATATATTT
TGATGCCATGGTATTTGTTTTGATTGATTTAGCACACGTACAGCCGCCGA
TCGGCTTAATCTGACCCGACTTGTGGCCGAATGCGAGAAGAGTCAAAGGA
GAAAATACGTAATCAGAAAGCTCTACTCCTGCAATACACCATACCGTCCC
TGGTACAGTACTTACTGTGGTACAAGAAGAATAAATAGTACCTCAGATAT
AGAAGAACACCATAAATCTGAATCGGACAATGCTCCCTCGCCTCTTGAGG
AAAAACTATTATGGAAGATTTTACCCTTTTTACCCTGGACACGCTGTTCC
CTTTCCACCAAAAGGAAACTATATGTTGCAGGTATAATTGCACGCGCCAG
CACGACTGGCTTATCTTGAGAGGCGTATATACGCCACAGTGGAGCTGTTA
AGTAAATCGTCGCGTGTGCTTCTGGCGTTCCACGTTTTACCGGCAGGCTT
TATACGAGGCGGGTTTCATCACCTACATGAGAACAGACCGGCCCAGCCTT
AG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11040:3568..5719+

>mRNA_S-dermatodea_contig11040.687.1 ID=mRNA_S-dermatodea_contig11040.687.1|Name=mRNA_S-dermatodea_contig11040.687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig11040:3568..5719+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCTCGTTGGAGCAGACATGGCGTCCGCCGTAGCGGCATCGGTATCCT
CCCTGGAGGTCCTCTCTGTGGAAAAGAGGCGTGTCAGGAGGAAGCCCCCC
GCGCCCTTCATAACGTCCACCCTGCAGCAGGAATCGAACCGGAAGCTCAG
GATGGGCGCCGCGCAGACCATGAGAGCTGCTCAGGGAGCTCGTTGGAGCA
GACATGGCGTCCGCCGTAGCGGCATCGGTATCCTCCCTGGAGGTCCTCTC
TGTGGAAAAGAGGCGTGTCAGGAGGAAGCCCCCCGCGCCCTTCATAACGT
CCACCCTGCAGCAGGAATCGAACCGGAAGCTCAGGATGGGCGCCGCGCAG
ACCATGAGAGCTGCTCAGGCTTTATACGAGGCGGGTTTCATCACCTACAT
GAGAACAGACCGGCCCAGCCTTAGGCTTTATACGAGGCGGGTTTCATCAC
CTACATGAGAACAGACCGGCCCAGCCTTAG
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