mRNA_S-dermatodea_contig11029.682.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11029.682.1
Unique NamemRNA_S-dermatodea_contig11029.682.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11029.682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11029contigS-dermatodea_contig11029:2..877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size876
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11029.682.1prot_S-dermatodea_contig11029.682.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11029 304..828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.6472135-UTR-S-dermatodea_contig11029:1..3031622924184.6472135-UTR-S-dermatodea_contig11029:1..303Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11029 2..303 +
1694079076.2066178-UTR-S-dermatodea_contig11029:1..3031694079076.2066178-UTR-S-dermatodea_contig11029:1..303Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11029 2..303 +
1622924184.6671338-UTR-S-dermatodea_contig11029:828..8771622924184.6671338-UTR-S-dermatodea_contig11029:828..877Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11029 829..877 +
1694079076.226567-UTR-S-dermatodea_contig11029:828..8771694079076.226567-UTR-S-dermatodea_contig11029:828..877Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11029 829..877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.6569157-CDS-S-dermatodea_contig11029:303..8281622924184.6569157-CDS-S-dermatodea_contig11029:303..828Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11029 304..828 +
1694079076.2161038-CDS-S-dermatodea_contig11029:303..8281694079076.2161038-CDS-S-dermatodea_contig11029:303..828Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11029 304..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11029.682.1

>prot_S-dermatodea_contig11029.682.1 ID=prot_S-dermatodea_contig11029.682.1|Name=mRNA_S-dermatodea_contig11029.682.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=175bp
MNGMFYVGEAAPPGPSSHTMTIKSYNLNFRPRSTDGTRNSPLLPTYTKLN
TKITLLIIPRTLEYTHPRSTIAHHHHHHRIHVQTPPSETTHSTLLTVPPS
RKNKQRRPPHLLVYTVSAPLTPLSSTVWRDAAPSAVRELGRTPARQSRSR
PRVWTHYYIPQERGVKISNQLLHQ*
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mRNA from alignment at S-dermatodea_contig11029:2..877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11029.682.1 ID=mRNA_S-dermatodea_contig11029.682.1|Name=mRNA_S-dermatodea_contig11029.682.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=876bp|location=Sequence derived from alignment at S-dermatodea_contig11029:2..877+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGGCTGTGCTGCTGCAGTCGACTCACCGTGTACACCATTTCCGTCGT
CGCCCGTCGGGGGCGGAACGTTACAAACAATATATCCGTACGGTTTCTAC
GTGAAGTTCCCTATGTGGATATTATGTAATACCGCCCTCATCGCTGCTAA
TAATTCCCAGGTAGTACGTAATTAGCGGGCAAAATATTGAATCATCATGA
GGAAACCACCACCACCCAGGTGGTGGATGGCCTCGGTCGCTGTGAATCGT
TTTTTCATCGCTCTTCGTGAAATAAATGCAAGTATGACAGAAGCGCTAAT
AAATGAATGGTATGTTTTATGTTGGAGAGGCCGCCCCACCAGGTCCTTCT
TCGCATACGATGACAATCAAGTCCTACAATTTAAACTTTCGACCACGATC
GACCGACGGCACACGAAACTCTCCTCTGTTACCTACCTACACCAAATTGA
ATACAAAAATAACACTATTGATAATTCCAAGAACACTAGAGTACACCCAC
CCACGCTCGACCATTGCACACCACCACCACCACCACCGAATACATGTACA
AACGCCTCCTTCTGAAACCACACACTCAACTCTACTTACTGTTCCTCCAT
CACGGAAAAACAAACAGCGCCGCCCCCCGCACCTACTTGTATACACTGTT
TCTGCACCTCTCACACCACTATCGAGTACAGTATGGAGGGACGCCGCTCC
CAGCGCTGTACGCGAACTCGGCCGAACCCCAGCACGACAATCGAGATCAC
GCCCACGAGTCTGGACGCACTACTACATCCCCCAGGAAAGAGGGGTAAAA
ATAAGCAATCAACTGCTCCACCAATGATTAACTAAAAGTGAAAACTAGGC
AAGAGTTTTGCCGCACGCGTTCCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11029:2..877+

>mRNA_S-dermatodea_contig11029.682.1 ID=mRNA_S-dermatodea_contig11029.682.1|Name=mRNA_S-dermatodea_contig11029.682.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at S-dermatodea_contig11029:2..877+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATGGTATGTTTTATGTTGGAGAGGCCGCCCCACCAGGTCCTTCTTC
GCATACGATGACAATCAAGTCCTACAATTTAAACTTTCGACCACGATCGA
CCGACGGCACACGAAACTCTCCTCTGTTACCTACCTACACCAAATTGAAT
ACAAAAATAACACTATTGATAATTCCAAGAACACTAGAGTACACCCACCC
ACGCTCGACCATTGCACACCACCACCACCACCACCGAATACATGTACAAA
CGCCTCCTTCTGAAACCACACACTCAACTCTACTTACTGTTCCTCCATCA
CGGAAAAACAAACAGCGCCGCCCCCCGCACCTACTTGTATACACTGTTTC
TGCACCTCTCACACCACTATCGAGTACAGTATGGAGGGACGCCGCTCCCA
GCGCTGTACGCGAACTCGGCCGAACCCCAGCACGACAATCGAGATCACGC
CCACGAGTCTGGACGCACTACTACATCCCCCAGGAAAGAGGGGTAAAAAT
AAGCAATCAACTGCTCCACCAATGAATGAATGGTATGTTTTATGTTGGAG
AGGCCGCCCCACCAGGTCCTTCTTCGCATACGATGACAATCAAGTCCTAC
AATTTAAACTTTCGACCACGATCGACCGACGGCACACGAAACTCTCCTCT
GTTACCTACCTACACCAAATTGAATACAAAAATAACACTATTGATAATTC
CAAGAACACTAGAGTACACCCACCCACGCTCGACCATTGCACACCACCAC
CACCACCACCGAATACATGTACAAACGCCTCCTTCTGAAACCACACACTC
AACTCTACTTACTGTTCCTCCATCACGGAAAAACAAACAGCGCCGCCCCC
CGCACCTACTTGTATACACTGTTTCTGCACCTCTCACACCACTATCGAGT
ACAGTATGGAGGGACGCCGCTCCCAGCGCTGTACGCGAACTCGGCCGAAC
CCCAGCACGACAATCGAGATCACGCCCACGAGTCTGGACGCACTACTACA
TCCCCCAGGAAAGAGGGGTAAAAATAAGCAATCAACTGCTCCACCAATGA
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