mRNA_S-dermatodea_contig11021.677.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11021.677.1
Unique NamemRNA_S-dermatodea_contig11021.677.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11021.677.1 vs. uniprot
Match: A0A6H5KGA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA9_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.870e-34
Identity = 57/88 (64.77%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:   13 LWKSYTVGKYNTSPNGAGKVLAGINPDLVREFNETLSQQWKVYDYAVGLYRGRCRQILHERDFKLCKVPRPPAEYVMTSVEREEIYQQ 276
            +WK Y VGKYNTSP GAGKVLA I+P LV+EFNETLS QW+VY YAV LY+ RCRQ+LH RD  +C+VP  P++Y +T +ERE +YQ+
Sbjct:  329 MWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNETLSHQWEVYSYAVDLYKHRCRQMLHTRDLDMCEVPVAPSQYTLTELERESLYQE 416
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BLAST of mRNA_S-dermatodea_contig11021.677.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.360e-33
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:   13 LWKSYTVGKYNTSPNGAGKVLAGINPDLVREFNETLSQQWKVYDYAVGLYRGRCRQILHERDFKLCKVPRPPAEYVMTSVEREEIYQQ 276
            +WK Y VGKYNTSP GAGKVLA I+P LV+EFNETLS QW+VY YAV LY+ RC Q+LH RD  +C+VP  P++Y +T +ERE +YQ+
Sbjct:  271 MWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNETLSHQWEVYSYAVDLYKHRCHQMLHTRDLDMCEVPVAPSQYTLTELERESLYQE 358
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BLAST of mRNA_S-dermatodea_contig11021.677.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.210e-13
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    4 HKRLWK-SYTVGKYNTSPNGAGKVLAGINPDLVREFNETLSQQWKVYDYAVGLYRGRCRQILHE-RDFKLCKVPRPPAEY 237
            H  LW+      K N SP  +  VLA ++P LV++FN TLS QW +Y +AV L+R RC+++L E + ++ C V +PP EY
Sbjct:  272 HDDLWRPQLEEHKLNASPVQSSNVLASLDPQLVKQFNSTLSYQWLMYGHAVRLFRARCQEVLPEYQHWEFCSVQQPPVEY 351
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BLAST of mRNA_S-dermatodea_contig11021.677.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.070e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    4 HKRLWKSYTVGKYNTSPNGAGKVLAGINPDLVREFNETLSQQWKVYDYAVGLYRGRCRQILHERDFK-LCKVP 219
            H RLW++ +    N SP  +  VL  I+PDLVREFN TLS QW+VYD A+ L+  RCR++L  +D   LC VP
Sbjct:  268 HPRLWEAASEVNNNGSPVHSRDVLDRIDPDLVREFNATLSFQWQVYDVALQLWDSRCREVLPLQDHSSLCSVP 340
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BLAST of mRNA_S-dermatodea_contig11021.677.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.240e-12
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    1 RHKRLWKSYTVGKYNTSPNGAGKVLAGINPDLVREFNETLSQQWKVYDYAVGLYRGRCRQIL----HERDFKLCKVPRPPAEY 237
            +H  LW  Y+    N SP  +  VLA I+P LVR+FN++L+ QWKVY+ AV L+  RCR++L    H+    +C V  P + Y
Sbjct:  376 KHPALWDKYSYRHSNRSPVDSRYVLAAIDPSLVRQFNDSLALQWKVYEKAVELWGTRCREVLPITVHDA---MCTVAPPDSRY 455
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11021.677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KGA9_9PHAE3.870e-3464.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7G7_ECTSI1.360e-3363.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAP0_9PHAE1.210e-1343.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LIP4_ECTSI3.070e-1350.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGQ3_9PHAE9.240e-1242.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11021contigS-dermatodea_contig11021:625..4429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue9.6e-11
Seed eggNOG ortholog2880.D8LIP4
Preferred nameTMEM256
EggNOG free text desc.Protein of unknown function (DUF423)
EggNOG OGsCOG2363@1,KOG3472@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.4691308-CDS-S-dermatodea_contig11021:624..7941622924184.4691308-CDS-S-dermatodea_contig11021:624..794Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11021 625..794 +
1694079076.1018476-CDS-S-dermatodea_contig11021:624..7941694079076.1018476-CDS-S-dermatodea_contig11021:624..794Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11021 625..794 +
1622924184.4788299-CDS-S-dermatodea_contig11021:4319..44281622924184.4788299-CDS-S-dermatodea_contig11021:4319..4428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11021 4320..4428 +
1694079076.1143854-CDS-S-dermatodea_contig11021:4319..44281694079076.1143854-CDS-S-dermatodea_contig11021:4319..4428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11021 4320..4428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11021.677.1prot_S-dermatodea_contig11021.677.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11021 625..4428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11021.677.1

>prot_S-dermatodea_contig11021.677.1 ID=prot_S-dermatodea_contig11021.677.1|Name=mRNA_S-dermatodea_contig11021.677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
RHKRLWKSYTVGKYNTSPNGAGKVLAGINPDLVREFNETLSQQWKVYDYA
VGLYRGRCRQILHERDFKLCKVPRPPAEYVMTSVEREEIYQQG
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mRNA from alignment at S-dermatodea_contig11021:625..4429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11021.677.1 ID=mRNA_S-dermatodea_contig11021.677.1|Name=mRNA_S-dermatodea_contig11021.677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3805bp|location=Sequence derived from alignment at S-dermatodea_contig11021:625..4429+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCATAAGAGACTCTGGAAATCGTACACGGTCGGCAAATACAACACGTC
CCCCAACGGCGCTGGCAAAGTCCTGGCCGGCATCAACCCCGACCTAGTCC
GGGAGTTCAACGAGACGCTAAGCCAGCAGTGGAAAGTGTACGACTACGCC
GTGGGGCTATATCGAGGACGGTGGGTTGCTGTCTTTTTTGCAACCTCTTG
GTGCTATTAATAGCATTAATATTACTAAAATATGAGGTGGCTCAACTCTA
AAATCAAGTTTTTTGTACTCACCTCAAACATCAAGTCGTTTGGCATCACT
GTTAGGTTACAGAGATTGTGTAGGATTCGCGTCGCAGAATCGTATAGGAA
ACAGTGTGGAAAAAAGATCGAACAGCAGTGGCAAGTATACGACTACGCTG
TGGGGCTATATCGAGGACGGTGGGTTGCTGTCTTTTTTGCAACCTCTTGG
TGCTATTAATAGCATTTCTATTACTATAATAGGCGGTAGCTCAACTCTAA
AATTAAGTTATTTTGTGCTCACCTCAAACATCAAGTCGTTTGGCATCACT
TTTAGGTTACAGAGATTGTGTAGGATCCGTGTTGCAGAATCGTATAGGAA
ACAGTGGGGGGGGAAAAAAATCAAAGCGCTATTCATTTAAGAGAGACTAG
TAGGTATTAATAGCCACGGCTACGCCCGCGAGGTGTGCGTGGTCGCTCTA
CGCTAAAATCAAGTTTTTTGGTGCTCACCACAAACATGAAGTCGTTTGGC
ATCACTGTTTCGTTACAGAGATCGTGTAGGATTCGTGTTGCAGAATCGTA
TAGGAAACAGTGTGGAAAAAAAAGGTTCAAAGCGCTATTAATTTATTAAT
AAGAGAGACTACTGTAGTAGGTACTGTAGCCACGGCTACGCCCGCGAGGT
GTGCGTGGTCGCTCAACTCTAAAATCAAGTTGTTTGGCGCTCAACACAAA
TATCAAGTTGTTTGGCATCACTGTTAGGTTACAGAGATGGTGTAGGATTC
GTGTTACAGAATCGTATAGGAAACAGTGTGGAAAAAAACGTTCAAAGCGC
TGTTAATTTAAAAAGAGAGACACTACTATGTAGTAGGTAGCCACGGCTGC
GCCCGCGAGGTGTGCGTGGTCGCTCAACTCTAAAATCAAGTCGTTTGGCG
CTCAACACAAACATCCAGTTGTTTGGCATCACTCAAAATCGTATAGGTAT
AGGAGTTCAGTGTACAAAATCGTATAGGAAATAGTGGGGAAAAACAGTTA
AAGGCGCTACGAGTATTAATTAAGAAAGTCACGGCTACGCCCGCGATGTG
TGCGTGATCGCTCAGCTCTAAAACCAAGTTGTTTGGCATTAATTTTTGGC
GAAAAAAGTTGTGCATGAGTTTGTTGGAAATGTGTTATATGATGGTGGGT
TGTTTTCGTTTAAAAAAAAAAAAAGTACTCCGAGCTTTTCGCGTGACCCG
CGATTTGCACGTGTTAGTCGTTCATTGCTATGTTGGCCTCTGAACGTTTT
ATTCGCTAGCAACCGTATTGTTCGTTGACCGTGTTGTAATATAACATACA
ACGGAGTACAGCAATGACCGTGTTATAAAATTATCATATCGTGACCGTGT
TATAGTGTCTATAATATTGCAAAAATACGTCTAATGTCTGTATGAACGTT
TTAGTCGCTAACAACCGTATTTTTCGTTGACCGTGTTATAAAGTAACGGA
GTACAGGAATGACCGTGTTATAAAATTATCTTATCGTGACCGTGTTATAA
TGTCTATAATATTGCAAAAATAGCTCTAATGTCTGTATGGTCTATGATAC
AGACGTGGTACTCCTCCTTGCATCGAAGCGTAACCGATGTCATGATGGGA
TGGACGTCCGCCCGCTTCATCTGCGGAAACAAGGACATACATACTGTACT
ACAGTTACTTACGGAGGTACACTATAATCAAGTAATAAAGTAATCAGGCC
AAATCTCATGACCATGAATACAATACAATAACCAACTATTCCTATTAATA
TTAATATAAATACCATGAATTTTCAAACAACAAAAATCTCATGAATAACG
TAAAAGACACGAGATATGGCCATACACAAGAACATGGACCTTGAAATCTC
GATAATTCCAGCCTGTTTTTATGTTTCTAGGTTGAGACTTGTGGCAAATT
TGAACCTGTTTACTATGGTATTGATTGATTGATTGATTGATTGATTTGCA
AACGTATAGCCGATCGGCTTAATCCGACCTATCCGACTTGTGGTCAGACA
CGCAAAGAGTCAAGGAGAAAAATAACTGATCAGAAGTCTACTTACTGGTA
CACTGTCCCTGGTACTTACTATGGTACAAGAAATAAGAAAAGAGTATCCC
AGATGAAGGAAAAAAACGCTAGAAGAAGAGCTCGGACTCAAACAATGCTC
CCTATGGTCCCGCGTAATAGTAATAGTTATAGTTGCTAATAGTCTGACTT
GGTTGTATTGAATCAGTTGGTCGCTAAAGACAATTGTTGGCCGTTGGTCA
TGTTGGTCGTTAACCGTTTGGTCGCCAAAGACAGTTGTTGGTCGTCGGCC
ATGTTGGTCGTTAACCGTTTGGTCGCTGTCAACCTTTGCTGGCGTTTACC
TATGTTTGGTCGTTACATTTTTTGTCGCTAACCACCTTGCTTGTTGTTTA
CCAGGGTTGTATATCGTTGCCGATATATCGCACGATACGATATTATCTAT
CTATCGGCTGGCTGTTGGGCCGATGTATCGCACACGATACATGCCGATCT
ATCGTAAATATTTTGGCGGCAGTGGCGTTAGCAGTAGCTTGGAACGGCAG
AGTAGCAATCTTCTCGACGTAACGCAAGTGCCAGTCTTGCAAAAACCGCG
GCGGAGCCCCCCGCTTCGCTCGGACGCCGATATTTCCCCGATATATCGGG
CAAATGTCGGCATATCGGCTGCGCCGATTGCCGATATACGCGCCGATACA
CAGCCCTATTGTTTTCCCAGTTGGGCGTTTACCGTGCTGTTCGTGAACTG
TGTTGGTCGTTAGCCGCTTTAGGTCGCGAAATCCAGGAATTAGTGTAACT
GGGTGAGAGTAATCTAGAGTAATGAATCCGTCGGCCAGCAACATTGAGAC
CGGCCAGTAAAAATCTGATGCCTGGTAGGACCCCGGAAAAGAAAAAATCC
ACGTATGAAAACCCTTCTCTTCGTCATGTTATAAAAAATGAAGGGAGTTC
CACACAGCCTGTGCAGGCATGTTTGACCGAACGAGTAATCTCAGGAATGT
ATGATACCCAAATCCCGTTACTCCTTAGTTACTCAGTGACGCCCATGTCC
CAAACCGAGTAACACGCATCCTTGGTGAAACCTGTTGGGCGGATACCGTG
CTGGTCGTTAACCATGTTGGTCGTTAACCTTTTTGGTCGTTAACCTTTTT
GGTCGTTAACCGTGCTGGTTGTCAACCGTGCTGGTCGTTACCTGACGCCT
TTTCCGGACCGTATGATACCTCCCCGGGTGTCACGAAGGGTTGCGGTGGT
CGCTGCCGAGGGCCGTGTGAACACAGAACTAGAATAATTAACACATACAG
TAACTAGAATTGGGGTTAAACCAATCATTTTTGTAGAAGAAAACAGAAGG
CCCAATCTAATTCAGTGGAAGCGTACGTCATATATTTTGCTATGAAGTAC
ATCCTCCCCCCCGGTCTAACACCACACGTGACTCTCCCCATACAGGTGCC
GACAAATCCTGCATGAACGGGACTTTAAACTGTGCAAAGTGCCGAGGCCT
CCCGCCGAGTACGTGATGACGAGCGTGGAGCGTGAAGAGATCTATCAGCA
GGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11021:625..4429+

>mRNA_S-dermatodea_contig11021.677.1 ID=mRNA_S-dermatodea_contig11021.677.1|Name=mRNA_S-dermatodea_contig11021.677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig11021:625..4429+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCATAAGAGACTCTGGAAATCGTACACGGTCGGCAAATACAACACGTC
CCCCAACGGCGCTGGCAAAGTCCTGGCCGGCATCAACCCCGACCTAGTCC
GGGAGTTCAACGAGACGCTAAGCCAGCAGTGGAAAGTGTACGACTACGCC
GTGGGGCTATATCGAGGACGAGGCATAAGAGACTCTGGAAATCGTACACG
GTCGGCAAATACAACACGTCCCCCAACGGCGCTGGCAAAGTCCTGGCCGG
CATCAACCCCGACCTAGTCCGGGAGTTCAACGAGACGCTAAGCCAGCAGT
GGAAAGTGTACGACTACGCCGTGGGGCTATATCGAGGACGGTGCCGACAA
ATCCTGCATGAACGGGACTTTAAACTGTGCAAAGTGCCGAGGCCTCCCGC
CGAGTACGTGATGACGAGCGTGGAGCGTGAAGAGATCTATCAGCAGGGCG
TGCCGACAAATCCTGCATGAACGGGACTTTAAACTGTGCAAAGTGCCGAG
GCCTCCCGCCGAGTACGTGATGACGAGCGTGGAGCGTGAAGAGATCTATC
AGCAGGGC
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