mRNA_S-dermatodea_contig11020.675.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11020.675.1
Unique NamemRNA_S-dermatodea_contig11020.675.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11020.675.1 vs. uniprot
Match: D8LU89_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU89_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 6.340e-33
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 3 
Query:   48 DSMDWSWGSEFVVKSDLSSA-EVYMSPNVLDQVWTAEMAFLRDMYLLEADFFRFVWGLLQQPEAAAPATAALAVHAGTK 281
            +SMDWSW +EF  + D+S   EVYMS +VL+QVWTAEM+FLRDMYLL+ADFFRFVWGLLQQPEAA PATA LA HAGTK
Sbjct:    2 ESMDWSWNAEFGARHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTK 80
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BLAST of mRNA_S-dermatodea_contig11020.675.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 6.510e-31
Identity = 66/94 (70.21%), Postives = 74/94 (78.72%), Query Frame = 3 
Query:    3 GKQGQPRERIRSRRGDSMDWSWGSEFVVKSDLSSA-EVYMSPNVLDQVWTAEMAFLRDMYLLEADFFRFVWGLLQQPEAAAPATAALAVHAGTK 281
            GK+G  R     RR +SMDWS  SEF  + D+S   EVYMS +VL+QVWTAEM+FLRDMYLL+ADFFRFVWGLLQQPEAA PATA LA HAGTK
Sbjct: 2384 GKRGHTRRGSGRRRMESMDWSLSSEFGARHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTK 2477
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11020.675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU89_ECTSI6.340e-3375.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTV6_9PHAE6.510e-3170.21USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11020contigS-dermatodea_contig11020:3318..4074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size284
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.3211513-CDS-S-dermatodea_contig11020:3317..34051622924184.3211513-CDS-S-dermatodea_contig11020:3317..3405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 3318..3405 +
1694079076.0263174-CDS-S-dermatodea_contig11020:3317..34051694079076.0263174-CDS-S-dermatodea_contig11020:3317..3405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 3318..3405 +
1622924184.3316429-CDS-S-dermatodea_contig11020:3878..40721622924184.3316429-CDS-S-dermatodea_contig11020:3878..4072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 3879..4072 +
1694079076.03824-CDS-S-dermatodea_contig11020:3878..40721694079076.03824-CDS-S-dermatodea_contig11020:3878..4072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 3879..4072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11020.675.1prot_S-dermatodea_contig11020.675.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11020 3318..4072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11020.675.1

>prot_S-dermatodea_contig11020.675.1 ID=prot_S-dermatodea_contig11020.675.1|Name=mRNA_S-dermatodea_contig11020.675.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=94bp
VGSKDNPAKGYALAEETQWTGAGALSSSSSLICPAPRYTCLRMCWTRSGR
RRWRSCGTCICSKQTSFGSCGVCFSSRKRRLPQRPPSLSTPAPR
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mRNA from alignment at S-dermatodea_contig11020:3318..4074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11020.675.1 ID=mRNA_S-dermatodea_contig11020.675.1|Name=mRNA_S-dermatodea_contig11020.675.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=757bp|location=Sequence derived from alignment at S-dermatodea_contig11020:3318..4074+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGGAAGCAAGGACAACCCCGCGAAAGGATACGCTCTCGCAGAGGAGAC
TCAATGGACTGGAGCTGGGGCTCTGAGTTCGTCGTCAAGTGAGTGCCCCC
TTGCGTAGCTTGCGCGATGCTAATTTGGGCTGGCGCTCTCGCTGTGGCGT
CGCGAGCTTTTGCTTCAGGGCACACGGCGAAACCTCCCGTGTGTTCTGAG
TGTGACCTGACTTTGAAGGGTCTGATCGTTTTTGATCGTTGTGCGAATGC
GAAATGGGGAGGGAAGCTGTTGAAAACACTGGGCCCTCCCGCCACGTAAG
GTTGATAACCAACCACCGTGAGACAACCACAGGAGGAGAATAGTGCTGCA
GCATTTTTTTCCTCTTCTCTGTTCTGTCCTCGCCTCCGTGGCATTACCGC
CTCCTTTCTGTTCTCGTGCCTGTCCAACCTCAGGAGGAGAGTAGTGTTGC
AACATTTTTTTGTCCTGTTCGCTATTCTGTCGTCGTGTCCGTGGCATTAC
CGCCTCATTTTTGTTCTCGCGGCTGTCCAACGGCGTTGGCGTATATATTC
GTTCTGGCCAGGTCTGATCTGTCCAGCGCCGAGGTATACATGTCTCCGAA
TGTGCTGGACCAGGTCTGGACGGCGGAGATGGCGTTCCTGCGGGACATGT
ATCTGCTCGAAGCAGACTTCTTTCGGTTCGTGTGGGGTCTGCTTCAGCAG
CCGGAAGCGGCGGCTCCCGCAACGGCCGCCCTCGCTGTCCACGCCGGCAC
CAAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11020:3318..4074+

>mRNA_S-dermatodea_contig11020.675.1 ID=mRNA_S-dermatodea_contig11020.675.1|Name=mRNA_S-dermatodea_contig11020.675.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig11020:3318..4074+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGGAAGCAAGGACAACCCCGCGAAAGGATACGCTCTCGCAGAGGAGAC
TCAATGGACTGGAGCTGGGGCTCTGAGTTCGTCGTCAAGTGGGAAGCAAG
GACAACCCCGCGAAAGGATACGCTCTCGCAGAGGAGACTCAATGGACTGG
AGCTGGGGCTCTGAGTTCGTCGTCAAGTCTGATCTGTCCAGCGCCGAGGT
ATACATGTCTCCGAATGTGCTGGACCAGGTCTGGACGGCGGAGATGGCGT
TCCTGCGGGACATGTATCTGCTCGAAGCAGACTTCTTTCGGTTCGTGTGG
GGTCTGCTTCAGCAGCCGGAAGCGGCGGCTCCCGCAACGGCCGCCCTCGC
TGTCCACGCCGGCACCAAGGGTCTGATCTGTCCAGCGCCGAGGTATACAT
GTCTCCGAATGTGCTGGACCAGGTCTGGACGGCGGAGATGGCGTTCCTGC
GGGACATGTATCTGCTCGAAGCAGACTTCTTTCGGTTCGTGTGGGGTCTG
CTTCAGCAGCCGGAAGCGGCGGCTCCCGCAACGGCCGCCCTCGCTGTCCA
CGCCGGCACCAAGG
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