mRNA_S-dermatodea_contig11020.673.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11020.673.1
Unique NamemRNA_S-dermatodea_contig11020.673.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.310e-38
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESIQRHDT--RLSAGPE 240
            GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDL TM RHKLNHRCSFPMELDMAPWTLE+IQR  +  RLS G E
Sbjct: 1866 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLGTMRRHKLNHRCSFPMELDMAPWTLENIQRQHSGGRLSGGSE 1947
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.150e-37
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESIQR 210
            GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDL+TM RHKLNHRCSFPMELDMAPWTLE+IQR
Sbjct: 2849 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLENIQR 2918
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: A0A835YQG3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.150e-24
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPM 168
            GDN YLCE+CG+RV AQRRCAIK LP TLIVHLKRFEF+L TM+RHKLNHRC+FPM
Sbjct:  157 GDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 212
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: A0A7S4ITW2_9EUKA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ITW2_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 4.380e-18
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESIQRHD 216
            GDN Y C KC ++VTA +RC I+ LP+TLIVH+KRFEFDL  M R K+N  C FP +L++ P+T E + R +
Sbjct:  231 GDNKYQCSKCDKKVTALKRCCIESLPNTLIVHMKRFEFDLEEMRRMKVNDHCKFPFDLNVEPYTKEGLARRE 302
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3)

HSP 1 Score: 89.0 bits (219), Expect = 2.180e-17
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESIQRHDTRLSAGPE 240
            GDN Y C  C + VTA++R  +  LP TLIVHLKRFEFD+ T+ R+K+N  C FP ELDM P+TL  + R +   S   E
Sbjct: 1988 GDNKYFCATCSRHVTAKKRACVFSLPQTLIVHLKRFEFDMETLRRYKINDYCEFPHELDMEPYTLAGLTRLERESSTTME 2067
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 88.6 bits (218), Expect = 2.950e-17
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESIQRHD 216
            GDN + C +C  +V A +RC +K LP  LIVHLKRFEFDL TM R KLN  C FPM LDM P+T E + + +
Sbjct: 1561 GDNKFHCSECNAKVDALKRCCVKNLPDNLIVHLKRFEFDLETMKRIKLNDSCQFPMILDMEPYTKEGLAKKE 1632
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: UPI000644FF27 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FF27)

HSP 1 Score: 88.2 bits (217), Expect = 4.010e-17
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESIQRHD 216
            GDN Y C +C Q+V    R  +K LP+TLI+H KRFEFDL TM R KLN    FPMELDMAP+T E ++R +
Sbjct: 1485 GDNKYFCSQCSQKVKCLMRRCVKSLPNTLIIHNKRFEFDLDTMRRTKLNDALKFPMELDMAPYTKEVLERKE 1556
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: A0A6B2KX30_9EUKA (USP domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KX30_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 6.860e-17
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESIQRHD 216
            G+N Y+CE CG+ V+  +RC IK LP  L++HLKRFEFD  T+ R K++  CSFPM L+M P+T E + R +
Sbjct:  155 GENKYMCESCGEPVSTLKRCCIKDLPHMLVIHLKRFEFDYDTLDRKKVSSPCSFPMLLNMEPYTAEGLARKE 226
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: A0A7S3MTM4_9CILI (Hypothetical protein n=2 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3MTM4_9CILI)

HSP 1 Score: 86.7 bits (213), Expect = 1.330e-16
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESI 204
            GDN Y CE+  Q+VTA++RC I  L +T++VHLKRFEFD T M R K+N  C FPM L+  PWT + +
Sbjct:  715 GDNKYFCEQYNQKVTAKKRCLINSLSNTVVVHLKRFEFDFTRMQRIKVNDYCEFPMNLNFKPWTKDGV 782
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BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Match: A0A024U3V4_9STRA (USP domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3V4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.850e-16
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNHRCSFPMELDMAPWTLESIQR 210
            GDN Y CE+  Q+V A +R  +K LP TL+VHLKRFEFD  TM + KLN    FP +L+MAP+T ES+QR
Sbjct: 1508 GDNAYYCEQVQQKVRATKRVCLKTLPDTLVVHLKRFEFDYDTMEKVKLNDYVEFPTQLNMAPYTAESLQR 1577
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11020.673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTV6_9PHAE1.310e-3887.80USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LU88_ECTSI1.150e-3795.71Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A835YQG3_9STRA4.150e-2482.14USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4ITW2_9EUKA4.380e-1854.17Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A0D2WMI0_CAPO32.180e-1751.25Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarz... [more]
L8GPA8_ACACA2.950e-1755.56Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba caste... [more]
UPI000644FF274.010e-1756.94hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6B2KX30_9EUKA6.860e-1751.39USP domain-containing protein n=2 Tax=Arcella inte... [more]
A0A7S3MTM4_9CILI1.330e-1654.41Hypothetical protein n=2 Tax=Fabrea salina TaxID=3... [more]
A0A024U3V4_9STRA1.850e-1657.14USP domain-containing protein n=2 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11020contigS-dermatodea_contig11020:218..1288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue5.6e-33
Seed eggNOG ortholog2880.D8LU88
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size516
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.2241578-CDS-S-dermatodea_contig11020:217..4151622924184.2241578-CDS-S-dermatodea_contig11020:217..415Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 218..415 +
1694079075.9609342-CDS-S-dermatodea_contig11020:217..4151694079075.9609342-CDS-S-dermatodea_contig11020:217..415Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 218..415 +
1622924184.23303-CDS-S-dermatodea_contig11020:971..12861622924184.23303-CDS-S-dermatodea_contig11020:971..1286Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 972..1286 +
1694079075.977898-CDS-S-dermatodea_contig11020:971..12861694079075.977898-CDS-S-dermatodea_contig11020:971..1286Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11020 972..1286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11020.673.1prot_S-dermatodea_contig11020.673.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11020 218..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11020.673.1

>prot_S-dermatodea_contig11020.673.1 ID=prot_S-dermatodea_contig11020.673.1|Name=mRNA_S-dermatodea_contig11020.673.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=171bp
GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLTTMSRHKLNH
RCSFPMELDMAPWTLESIQRHDTRLSAGPESAAETTAAAAAATAAVPNKP
PPKAAGASTSDTIGARVIPNHRANDSTSSTSSASTPVARDEDEEEEGKEA
EGLASGGGARSPVPVLSGVGD
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mRNA from alignment at S-dermatodea_contig11020:218..1288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11020.673.1 ID=mRNA_S-dermatodea_contig11020.673.1|Name=mRNA_S-dermatodea_contig11020.673.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1071bp|location=Sequence derived from alignment at S-dermatodea_contig11020:218..1288+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGACAACTGCTACCTGTGCGAGAAGTGTGGGCAGCGCGTGACCGCGCA
GCGTCGGTGCGCGATCAAGCAGCTGCCGTCCACCCTCATCGTGCACCTTA
AGCGGTTCGAGTTCGACCTCACCACGATGAGCCGCCACAAGCTCAACCAT
CGCTGTTCCTTCCCCATGGAACTAGATATGGCCCCGTGGACGCTAGAGGT
GCGCGAGGGCCGGCATGTTGTTATACACTTGGCGTCTCGCTTTTAGTGCC
GAGTGTTTTCGCGGTTCGCCAGGATTTGTGTATTTTCTCTCCCGCGTTTG
TAGTTGGATCAGTACTGTTCGTATACCGATGCCCGTACCGATGCCCGTTG
AGTAGTGTGCATTGTACGACGTTGTTTTCATAGCGAGGTGGAACACAGTG
CAATAAATAATCCAAGATCGTTCAACCACCATGCGCCTTTTTTTTCCACT
ATGAGCACCTTGTCAGGCAACGATAGTGGCAACTTTTGTGGTTAGGTTGT
TGGAGGCCTCACAAGCGGGTGTGAGCACCGTTGTGTATGTACCGATAGGA
AACTAGACGTCGGCGGCGTGAGCACTCGGCCAGAAATGGCCTTTCAGCCC
CTTTGTATAACTTGCAGACTTGCTGGAATACACGACAGCTCTCGCCCTCG
ACAGGAGCGACCCTTGCAGTTTTGATTTACGTCGCATCACCACATACTCA
CAAAACTCGCCACGTTCCCGCCATTACACCCACCCTACCAAAAACGCCCT
GTAGAGCATCCAGCGACACGACACGCGCCTATCCGCGGGACCCGAAAGCG
CCGCGGAGACCACCGCCGCCGCCGCCGCCGCCACCGCAGCCGTGCCAAAC
AAACCCCCGCCGAAGGCGGCTGGAGCGAGCACAAGCGACACGATTGGCGC
ACGGGTTATACCGAATCACCGCGCCAACGACTCCACCTCGTCTACGAGCT
CCGCGTCAACCCCTGTTGCGCGAGACGAAGACGAAGAGGAGGAGGGTAAG
GAGGCGGAAGGGCTCGCCAGCGGCGGTGGCGCGCGGTCCCCCGTTCCCGT
GCTCTCTGGAGTCGGCGATGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11020:218..1288+

>mRNA_S-dermatodea_contig11020.673.1 ID=mRNA_S-dermatodea_contig11020.673.1|Name=mRNA_S-dermatodea_contig11020.673.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at S-dermatodea_contig11020:218..1288+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGACAACTGCTACCTGTGCGAGAAGTGTGGGCAGCGCGTGACCGCGCA
GCGTCGGTGCGCGATCAAGCAGCTGCCGTCCACCCTCATCGTGCACCTTA
AGCGGTTCGAGTTCGACCTCACCACGATGAGCCGCCACAAGCTCAACCAT
CGCTGTTCCTTCCCCATGGAACTAGATATGGCCCCGTGGACGCTAGAGGG
GGACAACTGCTACCTGTGCGAGAAGTGTGGGCAGCGCGTGACCGCGCAGC
GTCGGTGCGCGATCAAGCAGCTGCCGTCCACCCTCATCGTGCACCTTAAG
CGGTTCGAGTTCGACCTCACCACGATGAGCCGCCACAAGCTCAACCATCG
CTGTTCCTTCCCCATGGAACTAGATATGGCCCCGTGGACGCTAGAGAGCA
TCCAGCGACACGACACGCGCCTATCCGCGGGACCCGAAAGCGCCGCGGAG
ACCACCGCCGCCGCCGCCGCCGCCACCGCAGCCGTGCCAAACAAACCCCC
GCCGAAGGCGGCTGGAGCGAGCACAAGCGACACGATTGGCGCACGGGTTA
TACCGAATCACCGCGCCAACGACTCCACCTCGTCTACGAGCTCCGCGTCA
ACCCCTGTTGCGCGAGACGAAGACGAAGAGGAGGAGGGTAAGGAGGCGGA
AGGGCTCGCCAGCGGCGGTGGCGCGCGGTCCCCCGTTCCCGTGCTCTCTG
GAGTCGGCGATAGCATCCAGCGACACGACACGCGCCTATCCGCGGGACCC
GAAAGCGCCGCGGAGACCACCGCCGCCGCCGCCGCCGCCACCGCAGCCGT
GCCAAACAAACCCCCGCCGAAGGCGGCTGGAGCGAGCACAAGCGACACGA
TTGGCGCACGGGTTATACCGAATCACCGCGCCAACGACTCCACCTCGTCT
ACGAGCTCCGCGTCAACCCCTGTTGCGCGAGACGAAGACGAAGAGGAGGA
GGGTAAGGAGGCGGAAGGGCTCGCCAGCGGCGGTGGCGCGCGGTCCCCCG
TTCCCGTGCTCTCTGGAGTCGGCGAT
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