mRNA_S-dermatodea_contig1100.664.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1100.664.1
Unique NamemRNA_S-dermatodea_contig1100.664.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: A0A7M7JIG7_VARDE (Non-specific serine/threonine protein kinase n=5 Tax=Varroa TaxID=62624 RepID=A0A7M7JIG7_VARDE)

HSP 1 Score: 61.2 bits (147), Expect = 7.300e-9
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   34 AVLAILEERGESSEIFLREYAKGYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLYAACCNGHIAAALALLRGG 270
            A   IL + G +  +   E  +G TPLH+AA+ +  ++VQLL++HGA ++ARD DGF P   A   GH+    AL + G
Sbjct:   63 ACARILLQAGGNPNVAAGEKERGRTPLHLAAEASNLEVVQLLMQHGADINARDCDGFTPFDIAERAGHVGVMEALKKAG 141          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: A0A517YP29_9BACT (Ankyrin repeats (3 copies) n=1 Tax=Poriferisphaera corsica TaxID=2528020 RepID=A0A517YP29_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.430e-8
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 LHKAVKASQRDAVLAILEERGESSEIFLREYAKGYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPL 213
            +H AV  ++R A+  +L+    +  I + +    YT LHIA  +N ADIVQLL+EHGA +DA+  DG  P+
Sbjct:   75 IHVAVDRNRRKALDYLLKSSDVNWGIRMSDGRNNYTSLHIAVIQNNADIVQLLIEHGADIDAKGDDGMTPI 145          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: A0A369RWR1_9METZ (Tankyrase-2 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RWR1_9METZ)

HSP 1 Score: 56.6 bits (135), Expect = 3.120e-8
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1
Query:   94 AKGYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLY 216
            +KG TPLHIAAK N  ++ Q+LL+HGA++DA+D+D F  L+
Sbjct:   24 SKGKTPLHIAAKYNSLEVAQILLDHGAIIDAKDTDSFTQLH 64          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: UPI001FB85184 (ankyrin-1-like n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB85184)

HSP 1 Score: 59.3 bits (142), Expect = 3.310e-8
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   31 DAVLAILEERGESSEIFLREYAKGYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLYAACCNGHIAAALALLRGGA 273
            + V+  LEE  + +++       G  P+H AA +N   +V++LL HGA+ DA D +GF PL  A  NGH      LL+GGA
Sbjct:   19 EGVVQALEEGADVNQVS----HGGGRPIHSAALRNSGGLVRILLNHGALCDASDDEGFTPLMVASLNGHTEVVQELLKGGA 95          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: UPI001FB85A89 (ankyrin-1-like isoform X1 n=3 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB85A89)

HSP 1 Score: 59.3 bits (142), Expect = 3.320e-8
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 1
Query:    1 LHKAVKASQRDAVLAILEERGESSEIFLREYAKGYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLYAACCNGHIAAALALLRGGA 273
            L  ++       V+  LEE  + +++       G  P+H AA +N   +V++LL HGA+ DA D +GF PL  A  NGH      LL+GGA
Sbjct:   22 LWSSLAEGDEKGVVQALEEGADVNQVS----PGGGRPIHSAALRNSGGLVRILLNHGALCDASDDEGFTPLMVASLNGHTEVVQELLKGGA 108          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: A0A1V9ZPG9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZPG9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.600e-8
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 LHKAVKASQRDAVLAILEERGESSEIFLREY--AKGYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLYAACCNGHI 240
            +++AV+++    ++AILE      +  L EY  A G TPL + A KN    VQ+LL HGA +DA+D  G   L+ AC +G +
Sbjct:   58 VYEAVRSNDLAGLVAILEAATPDEKSRLLEYHGANGRTPLMMGASKNHVGCVQMLLTHGAFIDAKDDKGNAALHYACLHGSV 139          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: UPI001FB6A518 (ankyrin-1-like n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB6A518)

HSP 1 Score: 57.0 bits (136), Expect = 2.150e-7
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 1
Query:  100 GYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLYAACCNGHIAAALALLRGGA 273
            G  P+H A  +N   +V++LL HGA+ DA D +GF PL  A  NGH      LL+GGA
Sbjct:   38 GGRPIHSATLRNSGGLVRILLNHGALCDASDDEGFTPLMVASLNGHTEVVQELLKGGA 95          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: A0A8C6SFM7_9GOBI (Uncharacterized protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6SFM7_9GOBI)

HSP 1 Score: 54.7 bits (130), Expect = 3.540e-7
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   91 YAKGYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLYAACCNGHI 240
            +  GYTPLHIAAKKNQ +I  +LL++GA  + +   G  PL+ A   GHI
Sbjct:   23 FQNGYTPLHIAAKKNQMEIATVLLQYGAETNIQTKQGVTPLHLASQEGHI 72          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: A0A3B3ZAC9_9GOBI (Poly [ADP-ribose] polymerase n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZAC9_9GOBI)

HSP 1 Score: 56.2 bits (134), Expect = 4.140e-7
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1
Query:  106 TPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLYAACCNGHIAAALALLR 264
            TPLH+AA  N+  IVQLLL+HGA V A+D  G +PL+ AC  GH      LL+
Sbjct:  290 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKSGLVPLHNACSYGHYEVTELLLK 342          
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Match: S9YZ10_CAMFR (Ankyrin repeat domain-containing protein 27 n=1 Tax=Camelus ferus TaxID=419612 RepID=S9YZ10_CAMFR)

HSP 1 Score: 55.5 bits (132), Expect = 7.550e-7
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1
Query:  100 GYTPLHIAAKKNQADIVQLLLEHGAVVDARDSDGFLPLYAACCNGH 237
            G +PLH+AA   +AD+V LLL+HGA V ARD+   +PL+ AC NGH
Sbjct:  545 GSSPLHVAALHGRADLVLLLLKHGARVGARDASQAVPLHLACQNGH 590          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1100.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M7JIG7_VARDE7.300e-940.51Non-specific serine/threonine protein kinase n=5 T... [more]
A0A517YP29_9BACT1.430e-842.25Ankyrin repeats (3 copies) n=1 Tax=Poriferisphaera... [more]
A0A369RWR1_9METZ3.120e-856.10Tankyrase-2 n=1 Tax=Trichoplax sp. H2 TaxID=287889... [more]
UPI001FB851843.310e-839.51ankyrin-1-like n=1 Tax=Penaeus chinensis TaxID=139... [more]
UPI001FB85A893.320e-836.26ankyrin-1-like isoform X1 n=3 Tax=Penaeus chinensi... [more]
A0A1V9ZPG9_9STRA8.600e-839.02Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
UPI001FB6A5182.150e-746.55ankyrin-1-like n=1 Tax=Penaeus chinensis TaxID=139... [more]
A0A8C6SFM7_9GOBI3.540e-750.00Uncharacterized protein n=1 Tax=Neogobius melanost... [more]
A0A3B3ZAC9_9GOBI4.140e-752.83Poly [ADP-ribose] polymerase n=2 Tax=Periophthalmu... [more]
S9YZ10_CAMFR7.550e-756.52Ankyrin repeat domain-containing protein 27 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1100contigS-dermatodea_contig1100:14303..14586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-27_000700.1
Exons1
Model size285
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924183.4276414-CDS-S-dermatodea_contig1100:14302..145841622924183.4276414-CDS-S-dermatodea_contig1100:14302..14584Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1100 14303..14584 +
1694079075.404463-CDS-S-dermatodea_contig1100:14302..145841694079075.404463-CDS-S-dermatodea_contig1100:14302..14584Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1100 14303..14584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1100.664.1prot_S-dermatodea_contig1100.664.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1100 14303..14584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1100.664.1

>prot_S-dermatodea_contig1100.664.1 ID=prot_S-dermatodea_contig1100.664.1|Name=mRNA_S-dermatodea_contig1100.664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=94bp
LHKAVKASQRDAVLAILEERGESSEIFLREYAKGYTPLHIAAKKNQADIV
QLLLEHGAVVDARDSDGFLPLYAACCNGHIAAALALLRGGALGV
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mRNA from alignment at S-dermatodea_contig1100:14303..14586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1100.664.1 ID=mRNA_S-dermatodea_contig1100.664.1|Name=mRNA_S-dermatodea_contig1100.664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=284bp|location=Sequence derived from alignment at S-dermatodea_contig1100:14303..14586+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCACAAGGCCGTGAAGGCCTCACAGCGTGACGCCGTGCTAGCAATCCT TGAGGAAAGGGGAGAGTCGTCCGAGATATTCCTGAGAGAATATGCAAAGG GATACACTCCACTTCATATTGCCGCGAAGAAAAACCAGGCGGACATAGTG CAGCTCTTGCTTGAACACGGTGCTGTGGTAGACGCGCGAGACTCGGACGG ATTTTTACCTCTCTATGCGGCATGTTGCAACGGGCACATCGCCGCTGCGC TTGCCTTGCTCAGGGGCGGGGCGTTGGGCGTCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1100:14303..14586+

>mRNA_S-dermatodea_contig1100.664.1 ID=mRNA_S-dermatodea_contig1100.664.1|Name=mRNA_S-dermatodea_contig1100.664.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig1100:14303..14586+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCACAAGGCCGTGAAGGCCTCACAGCGTGACGCCGTGCTAGCAATCCT
TGAGGAAAGGGGAGAGTCGTCCGAGATATTCCTGAGAGAATATGCAAAGG
GATACACTCCACTTCATATTGCCGCGAAGAAAAACCAGGCGGACATAGTG
CAGCTCTTGCTTGAACACGGTGCTGTGGTAGACGCGCGAGACTCGGACGG
ATTTTTACCTCTCTATGCGGCATGTTGCAACGGGCACATCGCCGCTGCGC
TTGCCTTGCTCAGGGGCGGGGCGTTGGGCGTCCTTCACAAGGCCGTGAAG
GCCTCACAGCGTGACGCCGTGCTAGCAATCCTTGAGGAAAGGGGAGAGTC
GTCCGAGATATTCCTGAGAGAATATGCAAAGGGATACACTCCACTTCATA
TTGCCGCGAAGAAAAACCAGGCGGACATAGTGCAGCTCTTGCTTGAACAC
GGTGCTGTGGTAGACGCGCGAGACTCGGACGGATTTTTACCTCTCTATGC
GGCATGTTGCAACGGGCACATCGCCGCTGCGCTTGCCTTGCTCAGGGGCG
GGGCGTTGGGCGTC
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