mRNA_S-dermatodea_contig110.656.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig110.656.1
Unique NamemRNA_S-dermatodea_contig110.656.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: D8LR67_ECTSI (Uroporphyrinogen-III C-methyltransferase, putative chloroplast n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR67_ECTSI)

HSP 1 Score: 499 bits (1284), Expect = 3.350e-166
Identity = 254/292 (86.99%), Postives = 272/292 (93.15%), Query Frame = 2 
Query:  344 DHTDGWNPVEGVETGTVSLVGSGPGDPDLMTVAGVRELESADLVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRSYPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVLHGPQQGLLSDAANGMFSGVDADKVARAAKRVAEQTEKMNGELAAEK 1219
            DHTDGW P +GVE GT SLVGSGPGDPDL+TVAG+REL+SADLVIADRLVSKEILGLV+GELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVL MRELGVEPKVVPGISSVFSAPLLGG+PVTHRGVATQVTLGTGYGQ+YARPDICD+HPQKTAVFLMAIGRLEELC DLVRRSYP D PVAIIENASTPRQRVI  TVDTIS+VARGLKV+APATIVVGEVV+VLHGP+QGLLSDAA GMF+GVD ++VA AA+RVAE+ E +    A EK
Sbjct:  104 DHTDGWEPRDGVEIGTCSLVGSGPGDPDLLTVAGLRELQSADLVIADRLVSKEILGLVEGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLVMRELGVEPKVVPGISSVFSAPLLGGVPVTHRGVATQVTLGTGYGQDYARPDICDYHPQKTAVFLMAIGRLEELCADLVRRSYPTDTPVAIIENASTPRQRVIKGTVDTISKVARGLKVKAPATIVVGEVVSVLHGPEQGLLSDAAEGMFAGVDKERVASAAERVAEKKEGLFSGEAGEK 395
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: A0A835ZDP8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA)

HSP 1 Score: 352 bits (902), Expect = 5.880e-107
Identity = 174/245 (71.02%), Postives = 209/245 (85.31%), Query Frame = 2 
Query:  383 TGTVSLVGSGPGDPDLMTVAGVRELESADLVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRSYPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVLHGPQQGLLSDAA 1117
            +GT++LVG+GPGDPDL+TV  VR L +ADLVIADRLVSKEIL LV+G+LRVARK+PGCAE+AQ+EIYRW++EG+ AGK+VVRLKIGDPF+FGRGGEE+LE R+ G+E  VVPGISSVF APLL GIPVTHRGVA QV LGTGY ++Y  PDI D+HP++TAVFLMA+GRL+ELC DL+RR YP   PVAI+E+ASTP QR + ATV+TI+ VA    VRAPATI+VG+VV VLHG  QGL+ D A
Sbjct:  299 SGTLTLVGAGPGDPDLLTVKAVRVLATADLVIADRLVSKEILDLVEGDLRVARKHPGCAEEAQQEIYRWVKEGVDAGKNVVRLKIGDPFVFGRGGEEILEARKWGLECSVVPGISSVFGAPLLAGIPVTHRGVANQVVLGTGYAKDYGTPDISDYHPEQTAVFLMAVGRLKELCADLMRRGYPAATPVAIVESASTPTQRTVKATVETITAVATEHAVRAPATIIVGDVVRVLHGDAQGLIQDVA 543
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: A0A6T5QQD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QQD2_HETAK)

HSP 1 Score: 305 bits (781), Expect = 2.490e-92
Identity = 146/243 (60.08%), Postives = 187/243 (76.95%), Query Frame = 2 
Query:  380 ETGTVSLVGSGPGDPDLMTVAGVRELESADLVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRSYPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVLHGPQQGLLS 1108
            + G +SLVG+GPGDP+L+TVA +R L+ ADLV++DRLVS+EIL  VK EL++ARK PGCAE+AQ EIY W +EGL+AGK VVRLKIGDP IFGRGGEE+L  RE G +P++V G+SS FSAPLLG IP+THRG A Q+ +GTGYGQN  +  I  +HP++TAVFLMA+GRL  LC DL    YP DCPVAIIE ASTP QR++   + +I  +A   +V+ P+ +V G VV  LHG ++GL++
Sbjct:   84 KAGHISLVGAGPGDPELLTVAAIRRLQGADLVVSDRLVSQEILDFVKCELKIARKRPGCAEEAQEEIYDWCKEGLAAGKRVVRLKIGDPLIFGRGGEEILRFREWGYKPELVAGVSSAFSAPLLGNIPLTHRGFANQLVIGTGYGQNCTKTGITPYHPERTAVFLMAVGRLPTLCADLAAEGYPADCPVAIIEKASTPEQRLVLGKISSIVALAEEHRVKPPSIVVFGAVVAALHGAKEGLVA 326
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: A0A7S2LDV1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDV1_9STRA)

HSP 1 Score: 299 bits (766), Expect = 2.270e-90
Identity = 146/249 (58.63%), Postives = 189/249 (75.90%), Query Frame = 2 
Query:  386 GTVSLVGSGPGDPDLMTVAGVRELESAD-LVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVR-RSYPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVLHGPQQGLLSDAANGM 1126
            G VS+VGSGPGDPDL+T+A  + +E  D L+IADRLVS EI+ L KGE+R ARK PGCA++AQ+EIY W REGL  GKHVVRLKIGDPF+FGRGGEEVLE R++GVEPKV+PG+S+ F+APLLGGIPVTHRG++ QV + TGYG+N   PD+  +H ++T VFLMA+GRL ELC++L    +YPRD PVA++E A  P QR +   ++TI++      ++ P+TIVVGEVV VL     G + +   G+
Sbjct:   72 GRVSMVGSGPGDPDLLTIAAAKVIEDPDALIIADRLVSPEIIALCKGEVRTARKLPGCADKAQQEIYDWCREGLMDGKHVVRLKIGDPFVFGRGGEEVLEFRKMGVEPKVIPGVSAAFAAPLLGGIPVTHRGISNQVVMCTGYGRNGTSPDLIQYHKEQTVVFLMAVGRLRELCDNLCNLANYPRDTPVAVVEKAGCPEQRTVVGDLNTIADYCIRYDIKPPSTIVVGEVVDVLLNEGVGSMEERVQGL 320
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: A0A7S0HSB0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSB0_9CRYP)

HSP 1 Score: 289 bits (740), Expect = 4.370e-86
Identity = 139/237 (58.65%), Postives = 181/237 (76.37%), Query Frame = 2 
Query:  386 GTVSLVGSGPGDPDLMTVAGVRELESADLVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRSYPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVLHGPQQ 1096
            G+++LVG+GPGDPDL+T+   + +++AD+VIADRLVSKEIL L+K EL++A+KYPGCA  AQ EIYRW  EGL+ GK++VRLKIGDPF+FGRGGEEVLE+R+ GVE KV+PGISS  + PL  GIPVTHRGVA +V   TG G+  + PD+  +HP++T VFLMA+GRLE L +DL R  YP+  PV IIE A+TP +R I  T+  I  +A   ++R P+ IVVGE V VL  P++
Sbjct:  105 GSITLVGAGPGDPDLLTLGAFKAIQAADVVIADRLVSKEILSLIKCELKIAQKYPGCAHDAQNEIYRWCAEGLAEGKNIVRLKIGDPFVFGRGGEEVLELRKFGVEAKVIPGISSALAGPLAAGIPVTHRGVANRVVFCTGMGKEESVPDVPAYHPEQTCVFLMAVGRLEALTDDLTREGYPQSTPVGIIERATTPHERTIRGTISDIVNLAHEEQIRPPSVIVVGEAVNVLCKPEK 341
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: L1J6F0_GUITC (TP_methylase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J6F0_GUITC)

HSP 1 Score: 284 bits (727), Expect = 1.860e-85
Identity = 139/232 (59.91%), Postives = 176/232 (75.86%), Query Frame = 2 
Query:  386 GTVSLVGSGPGDPDLMTVAGVRELESADLVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRSYPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVL 1081
            G+++LVG+GPGDPDL+T+  ++ + +ADLVIADRLVSKEIL L+K EL++A+KYPGCA  AQ EIYRW  EGL  GK +VRLKIGDPF+FGRGGEEVLE+R+ GVE KV+PGISS  + PL  GIPVTHRGVA +V   TG G+  + PDI  +HP++T VFLMA+GRL+ L +DL +  YP   PV IIE A+TP +R I  T++ I  +A   K+R P+ IVVGE V VL
Sbjct:   16 GSITLVGAGPGDPDLLTLGALKAIHAADLVIADRLVSKEILALIKSELKIAQKYPGCAHDAQNEIYRWCAEGLVEGKKIVRLKIGDPFVFGRGGEEVLELRKFGVEAKVIPGISSALAGPLAAGIPVTHRGVANRVVFCTGMGKEESIPDIPAYHPEQTCVFLMAVGRLKALTDDLTKGGYPSTTPVGIIERATTPHERTIRGTIEDIVILASEEKIRPPSVIVVGEAVNVL 247
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: A0A1E7FE26_9STRA (Uroporphyrin-III C-m n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE26_9STRA)

HSP 1 Score: 287 bits (734), Expect = 2.440e-85
Identity = 141/234 (60.26%), Postives = 181/234 (77.35%), Query Frame = 2 
Query:  386 GTVSLVGSGPGDPDLMTVAGVRELESAD-LVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRS-YPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVL 1081
            G ++LVGSGPGDPDL+TV   + L+  D L+I+DRLVS+EIL +VKGE+++ARK PGCAE AQ EIY W  EGL+AGKHV+RLKIGDPF+FGRGGEEV++ R+ GVE KVVPG+SS FSAPLL  IPVTHRGV+ QV + TGYG+    PD+  +H ++T VFLMA+GRL +LC+ LV  + YP+D PV IIE A  P QR +   + TI+++A    ++AP+TIVVG+VV VL
Sbjct:  107 GRITLVGSGPGDPDLLTVKAYKLLQDPDALIISDRLVSQEILDIVKGEIKIARKMPGCAEFAQEEIYFWTHEGLAAGKHVIRLKIGDPFVFGRGGEEVIQFRKFGVESKVVPGVSSAFSAPLLANIPVTHRGVSNQVVMCTGYGREGTSPDLIQYHEEQTIVFLMAVGRLRQLCDRLVNLAGYPKDTPVGIIERAGCPNQRTVVGNMQTIADIAEKYNIQAPSTIVVGKVVDVL 340
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: A0A7S4AWV6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWV6_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.100e-84
Identity = 149/259 (57.53%), Postives = 191/259 (73.75%), Query Frame = 2 
Query:  365 PVEGVETG-TVSLVGSGPGDPDLMTVAGVRELESAD-LVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRS-YPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVLHGPQ------QGLLSDA 1114
            P+E +E G  ++LVGSGPGDPDL+TV   + L+  D LVIADRLVS+EIL +V GE++VARK PGCAE AQ EIY W  +GLSAGKHV+RLKIGDP++FGRGGEEVL+ R+ GVE KVVPG+S+ FSAPLL  IPVTHRG + QV + TGYG+  + PD+  +H ++T VFLMA+GRL  LCE L++ + YP+D PV IIE A  P QR +   + TI+++A    ++AP+TIVVG+VV VL          QGLL +A
Sbjct:   96 PLEQLENGGRITLVGSGPGDPDLLTVKAYKLLQDPDALVIADRLVSQEILDMVGGEIKVARKLPGCAENAQAEIYWWTHQGLSAGKHVIRLKIGDPYVFGRGGEEVLQFRKFGVESKVVPGVSAAFSAPLLANIPVTHRGYSNQVVMCTGYGREGSSPDLIQYHEEQTIVFLMAVGRLRVLCERLIKLAGYPKDTPVGIIERAGCPNQRTVIGNMQTIADIAEKHNIQAPSTIVVGKVVNVLLEKDESGMVTQGLLQNA 354
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: A0A7S1CYT5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYT5_CYCTE)

HSP 1 Score: 284 bits (726), Expect = 1.450e-84
Identity = 139/234 (59.40%), Postives = 178/234 (76.07%), Query Frame = 2 
Query:  386 GTVSLVGSGPGDPDLMTVAGVREL-ESADLVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVR-RSYPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVL 1081
            G V+L+GSGPGDPDL+TVA  R L +   LVIADRLVSKEIL ++ GE+++ARK PGCAE AQ EIY W  +G+  GKHVVRLKIGDPF+FGRGGEEVL+ RE GVEP V+PG+S+ FSAPLLG IPVTHRGV+ QV + TGYG+    PD+  +H ++T VFLMA+GRL ELC+ L+   +YP   PV I+E A  P QR +   ++TI+++A   +++ P+TIVVG+VV VL
Sbjct:   80 GKVTLLGSGPGDPDLLTVAAYRILSDPKTLVIADRLVSKEILDVIAGEIKIARKLPGCAELAQEEIYWWTHQGIQEGKHVVRLKIGDPFVFGRGGEEVLKFREFGVEPTVIPGVSAAFSAPLLGSIPVTHRGVSNQVVMCTGYGREGTSPDLIQYHKEQTVVFLMAVGRLRELCQRLISLANYPAKTPVGIVERAGCPNQRTVVGNLETIADIAERFQIKPPSTIVVGDVVNVL 313
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BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Match: A0A7S4NG18_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NG18_GUITH)

HSP 1 Score: 284 bits (727), Expect = 2.670e-84
Identity = 139/232 (59.91%), Postives = 176/232 (75.86%), Query Frame = 2 
Query:  386 GTVSLVGSGPGDPDLMTVAGVRELESADLVIADRLVSKEILGLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFGRGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTGYGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRSYPRDCPVAIIENASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVL 1081
            G+++LVG+GPGDPDL+T+  ++ + +ADLVIADRLVSKEIL L+K EL++A+KYPGCA  AQ EIYRW  EGL  GK +VRLKIGDPF+FGRGGEEVLE+R+ GVE KV+PGISS  + PL  GIPVTHRGVA +V   TG G+  + PDI  +HP++T VFLMA+GRL+ L +DL +  YP   PV IIE A+TP +R I  T++ I  +A   K+R P+ IVVGE V VL
Sbjct:  103 GSITLVGAGPGDPDLLTLGALKAIHAADLVIADRLVSKEILALIKSELKIAQKYPGCAHDAQNEIYRWCAEGLVEGKKIVRLKIGDPFVFGRGGEEVLELRKFGVEAKVIPGISSALAGPLAAGIPVTHRGVANRVVFCTGMGKEESIPDIPAYHPEQTCVFLMAVGRLKALTDDLTKGGYPSTTPVGIIERATTPHERTIRGTIEDIVILASEEKIRPPSVIVVGEAVNVL 334
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig110.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR67_ECTSI3.350e-16686.99Uroporphyrinogen-III C-methyltransferase, putative... [more]
A0A835ZDP8_9STRA5.880e-10771.02Tetrapyrrole methylase n=1 Tax=Tribonema minus Tax... [more]
A0A6T5QQD2_HETAK2.490e-9260.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LDV1_9STRA2.270e-9058.63Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S0HSB0_9CRYP4.370e-8658.65Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1J6F0_GUITC1.860e-8559.91TP_methylase domain-containing protein n=1 Tax=Gui... [more]
A0A1E7FE26_9STRA2.440e-8560.26Uroporphyrin-III C-m n=1 Tax=Fragilariopsis cylind... [more]
A0A7S4AWV6_9STRA1.100e-8457.53Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1CYT5_CYCTE1.450e-8459.40Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4NG18_GUITH2.670e-8459.91Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig110contigS-dermatodea_contig110:12842..17913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score499.6
Seed ortholog evalue1.4e-138
Seed eggNOG ortholog2880.D8LR67
KEGG rclassRC00003,RC00871
KEGG koko:K00589
KEGG ReactionR03194
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
EggNOG free text desc.uroporphyrin-III C-methyltransferase activity
EggNOG OGsCOG0007@1,KOG1527@2759
EC2.1.1.107
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionuroporphyrinogen-III C-methyltransferase, putative chloroplast precursor
Ec32 orthologEc-06_004170.1
Exons4
Model size2720
Cds size1200
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig110.656.1prot_S-dermatodea_contig110.656.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig110 14304..17855 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.9571462-UTR-S-dermatodea_contig110:12841..143031622924182.9571462-UTR-S-dermatodea_contig110:12841..14303Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig110 12842..14303 -
1694079075.0111322-UTR-S-dermatodea_contig110:12841..143031694079075.0111322-UTR-S-dermatodea_contig110:12841..14303Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig110 12842..14303 -
1622924183.005927-UTR-S-dermatodea_contig110:17855..179131622924183.005927-UTR-S-dermatodea_contig110:17855..17913Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig110 17856..17913 -
1694079075.0796983-UTR-S-dermatodea_contig110:17855..179131694079075.0796983-UTR-S-dermatodea_contig110:17855..17913Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig110 17856..17913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.9691968-CDS-S-dermatodea_contig110:14303..145801622924182.9691968-CDS-S-dermatodea_contig110:14303..14580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 14304..14580 -
1694079075.032949-CDS-S-dermatodea_contig110:14303..145801694079075.032949-CDS-S-dermatodea_contig110:14303..14580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 14304..14580 -
1622924182.9791105-CDS-S-dermatodea_contig110:14902..150931622924182.9791105-CDS-S-dermatodea_contig110:14902..15093Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 14903..15093 -
1694079075.0431817-CDS-S-dermatodea_contig110:14902..150931694079075.0431817-CDS-S-dermatodea_contig110:14902..15093Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 14903..15093 -
1622924182.9888177-CDS-S-dermatodea_contig110:16209..164851622924182.9888177-CDS-S-dermatodea_contig110:16209..16485Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 16210..16485 -
1694079075.0585024-CDS-S-dermatodea_contig110:16209..164851694079075.0585024-CDS-S-dermatodea_contig110:16209..16485Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 16210..16485 -
1622924182.9982827-CDS-S-dermatodea_contig110:17399..178551622924182.9982827-CDS-S-dermatodea_contig110:17399..17855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 17400..17855 -
1694079075.0678263-CDS-S-dermatodea_contig110:17399..178551694079075.0678263-CDS-S-dermatodea_contig110:17399..17855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 17400..17855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig110.656.1

>prot_S-dermatodea_contig110.656.1 ID=prot_S-dermatodea_contig110.656.1|Name=mRNA_S-dermatodea_contig110.656.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=400bp
MAESTRRRSSRGLSAIVLAALASSQGASAFVSHGAFSLLSASAPASGGAR
PSQSQHQSRRQQTDRGQLGIGARSADARRTSSSLAGALAADNTSVDHTDG
WNPVEGVETGTVSLVGSGPGDPDLMTVAGVRELESADLVIADRLVSKEIL
GLVKGELRVARKYPGCAEQAQREIYRWMREGLSAGKHVVRLKIGDPFIFG
RGGEEVLEMRELGVEPKVVPGISSVFSAPLLGGIPVTHRGVATQVTLGTG
YGQNYARPDICDFHPQKTAVFLMAIGRLEELCEDLVRRSYPRDCPVAIIE
NASTPRQRVIAATVDTISEVARGLKVRAPATIVVGEVVTVLHGPQQGLLS
DAANGMFSGVDADKVARAAKRVAEQTEKMNGELAAEKGVAVSPTPVAGA*
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mRNA from alignment at S-dermatodea_contig110:12842..17913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig110.656.1 ID=mRNA_S-dermatodea_contig110.656.1|Name=mRNA_S-dermatodea_contig110.656.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5072bp|location=Sequence derived from alignment at S-dermatodea_contig110:12842..17913- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAAGCACCCCTTAGCACACCCCGCCACGCCCCCCTCGTCCCCACCTTTG
CCCCGACGATGGCGGAGTCAACGAGACGAAGAAGTAGCCGAGGGCTGAGT
GCGATTGTACTGGCGGCGCTGGCCAGCAGCCAAGGTGCATCCGCCTTCGT
GTCACACGGGGCATTCTCACTACTGTCCGCGTCAGCGCCCGCGAGCGGCG
GAGCGAGGCCGTCGCAATCGCAGCACCAGAGCCGGCGACAACAGACCGAC
AGAGGGCAGCTTGGTATCGGAGCGCGCTCTGCTGATGCTCGCCGTACGTC
GTCGTCCCTCGCCGGTGCGCTCGCGGCTGACAACACGTCCGTAGATCACA
CGGATGGTTGGAACCCAGTCGAAGGAGTCGAGACTGGGACCGTGTCGCTT
GTGGGCTCGGGGCCGGGTGATCCTGACCTCATGACCGTCGCGGGCGTGAG
AGAGCTGGAGTCGGCCGACCTCGTCATCGCGGACCGGCTCGTGTCCAAGG
AGATCCTAGGGCTGGTGAGTGCAGTAGTATGTATCGGTGAATATGTCGGT
TAGTATTGCTCGCCGTGGGCTTTTACAAGGTGGCAAGGGCGGCCACGTCT
GGAAACATCCACGCAACTGCCGGAAGTTGACAGTTAGAGCTATTTATATG
ACAGGTCTTACGGTACGAGCGTTCTATGCAGTACCAGGTATGTAGATACA
AGTATGATATCATCCGTGGCATCACCCACAGCTCACACCCATTTGTACAT
TTTCGTCGATCGAGCGAAACTGGCACGCCCTGCATGTATGGTGCCGGTTG
CCGAGTGCTCGGGGATGTAGGCTGTCATCTCGCGGGACGCCTGCAAGCTC
CAGGTATGCGGACAAGTGGCGAGAACCGCTGTTTTGTCGGAGATCTACGA
TTGGATGCTGTTCGGTCGGATGGGAGACTGCTCGAAGGGCTCTTCGGACT
ACGGCGGCGGTCGTGCGCTTTCATAACTACACCACTAGCCCACGCCCGAG
TGTACAACGAGCGAACCAGTGCGGACGGTACTGTAGCCACCGACGGGGCT
GCACAGCGGATGCGTTGACTTTCTGCAGCCACTGCTGGTGTCGCCACCAT
CTCACGCCGCGATGACATAGCCTCCTTTTTCGTCTCCCCTACGGTTGTCT
TTGATGATGCAGCAATCTCCGCCCTTTCTATAATACTTCGAAGTACGATA
TCATCAAGCGAAAGGGAGCCGGCTATATACCACCACTCGAACGTTCACCA
ATACCGGTGTGCTATAATCACGCGTGCTCGACCATTATAGGAGCGTTACG
CGGAACACCCTCTCACAGCACATGTATTTCGTATGCAGTACAACATGCAG
CGTGTATACCTGTTCCCTATCATAGCAGAACCTTCAACCCGCTCGCCCCC
TCCCCACCCCCCCCGAACAACACAACAGGTAAAGGGAGAGCTCCGCGTCG
CACGGAAATATCCCGGTTGCGCGGAGCAGGCCCAACGCGAGATCTACCGC
TGGATGCGGGAAGGCCTCTCGGCCGGGAAACACGTGGTTCGCCTCAAGAT
CGGCGATCCCTTCATTTTCGGCAGGGGCGGGGAAGAGGTGCTCGAGATGC
GCGAGTTAGGGGTGGAGCCTAAGGTCGTCCCGGGAATATCGTCGGTTTTT
TCGGCGCCGCTCTTGGGGGGCATTCCTGTGACGCACAGGGGCGTCGCAAC
CCAGGTGGGTTTCGGGTTTCGGAATTGGGTTACATGTTCATGTTGATGGT
GGCTTTTCGCGCTCTGTGTACTATTATTAGGAATTTTAACTGTCGGGTTA
ATGCGGGATATTTGGGCGTGCTCGGGTTCTGGATGGCTTGCTACAAGTAT
ATCGCTCTAATGTGCTGCTACGTGTACGCTTTACTACAAATAGTGCATAC
TGTGCATAGATCCGTGCCGCTGTGCGTAGAAGACTCAACTTGCTTGAATG
GTAATTCCGACAAAGGGGCAAGCTATGCTATATGTTAGTCGCTCGATTGT
TCGTTTCAAGGCACACCTTGCCACCCCACTAACTTTGGGACGGGACACCC
TTAGATTTATAGATTCCATGCGGTCGTTGCATTTGTTGTTTGTGTATTTC
GACAAGCACACGCCTGTGGTAGGCATGGGACGAACCAATCGCGTCAAAGC
TCGTCACCGCTGTACGCGGAGGGTAGAGACAGCGCTACACACTCCGAACA
CAACAAGCTGGTGCTTCTTTGTGACACTGCATGCGGACCTAAGCCCGGTG
CCAGCATCGAAATATGGCGACCCCCGATCATGGTGTCCTGGTTGTGCGCC
GAGTCTCCGCCTTGGTGACAGCGGGATGAGTTTGTTAGTTGATTCCGTAC
CTGGTGTATCGGTAGGACCCGGCTTGGCAGTCGATCAACGGCGAACGCGT
ATGGTATCGTTTGCTTCACACATCAAGAGGAGGGTAGGAACAGCGTGCGC
CAACCGAGAAACCATCTAGCACGGCGCAACGTAAATATCCCGGAGAAACA
ACCCAGAAAACGACAAATAGCCCGAACTAACGCTTCGGCATGTGGCGGTC
AAATGCGCCTCCAGCGCTCCAAACACCATCCCCCATCACATGCTATTGTA
GTACCCAACACTACGCAGCCATCCGCCCGTAGCCCTCACACGAACAGGGT
GGCCTCCTCAAACGAGCTCTACGTCCACCCCCTCAGTGACCGTTGCGTCG
CAATCTAATCTTGTATCGCATTCGTCGACAGCCCGCCAAAACGCCAACCA
AGGTAGAACTGCGGTTGGGCGTGCATATCATACCGTGCCCCACTCCCCTT
TCTTATCAACCCCTTTTCAGGTTACCTTGGGCACCGGGTACGGACAGAAC
TACGCGCGTCCGGACATCTGCGACTTCCACCCACAGAAGACCGCGGTGTT
TCTAATGGCGATCGGCCGCCTGGAGGAGCTGTGCGAAGATCTCGTGCGGC
GCTCGTACCCCAGAGATTGCCCGGTGGCCATCATTGAGAACGCGTCCACT
CCTAGACAAAGGTAAGCATAGTTCTGCTGTTGCAGAGCGAGAGGCGAGGG
GTTGTGGTGTTTTGGCTCGCTTTTTCTGGCGAGGCGAACAATAGGCTGGC
CATGTCCTTGCTGTGTTAAGATTCCGGTTATATGCTGTCCGATTTTGCCG
AGGTGGCTGCTATACAACGAAGACTGACACGCCACGCAGATCCGAAGGAG
AAGAACTGTGGGGCTTCGGATACAAATAGATTTTTTCGGTTCGAGGCGAC
CCAAGCCACGCCATGGAACACGGCTCACAACCCCCCCCCCACACACACAC
ACATTTCCACTGCCCGCCTCGTTCAACCTCAAGGGTGATCGCCGCTACCG
TTGACACGATATCGGAGGTGGCACGCGGGCTGAAGGTCAGGGCTCCGGCC
ACCATCGTCGTCGGGGAGGTGGTAACTGTTCTCCACGGACCCCAGCAGGG
TCTGCTCAGCGACGCCGCTAACGGGATGTTTTCCGGCGTCGACGCGGACA
AGGTCGCGCGGGCCGCGAAACGAGTGGCCGAGCAAACCGAGAAGATGAAC
GGGGAGCTGGCCGCTGAAAAGGGCGTTGCCGTGTCTCCCACCCCGGTCGC
TGGCGCATAGGTACTAAATCAGCGTTAGAGTCCCTGCGTGCTTTGTGGCG
TGTGTGATTTTGTGGACACAACCGTGCTTTGCGTTTCGTGGGAACATCCA
GGAGTTCCTCTGGCCGTTGGATGCAAATCACGCGGCAGTCGCGTTTCACC
CGCGGAATGCTTTTTTTGTACACCGTCGCTCCAAATTTGCGAATAGGGCA
CTTCGCTTATTCCGTGGCGTACCTTGTGCCTGTGGGGGCGGTGTATGAAC
CGTAGCACACCACAGGCGCCGGGTGACGATGTTGGTAGATCGCTGCATTT
TTCTGTCCCGTGAAAGGCAGCGCCTGTAAGACACACAGTGGGCAATCTTG
CCTTGGGATATAACGCTGGCTTTCATATTCTCGCTTTTGGATTCCTGCCC
CCCCCCTCCTGTGGTTGCTGTGGCATGCGCCAAAGCGGGCATCGGTGTTC
GGCGCGGCGTCAATAGCCAGACGCGCGGTCACAGCCTCCTGCTGTATCTC
CTCTTGTATTTACGAACAACTCCATTATTTCATGTTTCAGCGTATCAAGC
ATTGCTGACGTTGTATTTTACGTTTTTATTTTTATTGGAAAAGCGGCCGG
ACGTGGCCAATGCGGCGTCCAAGTGTGAAGTATTGCCGTGCTCTGGTTAG
GTGCTCCGGGCGAAACGCGGATTACGGCCATGATAGCTGAGGCCGTGGTG
GGTATGGGGAAGTATTTTTAGGGTTTGACCCTTACCGGCTTACCGGCGCG
GCGTTCGGCTCTTAAGCTTGTATACGTGGCGCTTCGGTGTCACATTTTCT
CAGCACACATTGTGGGCATGACGGTCGCAGCGCTTTAGGCATGGCGCGTG
CGATGGCGTGCGATGGCGTGCGAAATTTTGTAAGGGTATGGTAGGAGTTG
ATAACGATTTTGCCTACTTGAGCTCTGCGTGGTTTGTAGCTGCTGGTCCT
CAAAAGTGTTGCGATACCGTGTACCTGATACGTTTTTTATATGCTACGAT
CATTGTATACTCCTGCCACCTGTTGAAAGGATACGCTGGAGTGCCCCAAC
TTCACTACTGTTGCGGCGTGTCGTCGTGTGGGGCGGGTCCTCGCTGAGAC
TGCCTGCGCTGCCATCGCCACGATATCGGGCGTGGCCAGTCTGCTCCGCT
CCTAGGGTAGAGAGTCGCATCCTCGGGCAGGCTTACCACAAGGGAGAACA
TAGCACCTTGGAGTGTGTTGTATTGATGGAATTTATGTTACCTATATATT
GTCGCATTCGGCGGTAAGTTACCTTTTCCGTGTGCAATCAATGTTGAAAC
GATCGGCAGTGGTTTTATGTATTGGCGAGCCTGTGTGTGCTCATGTTTGG
GGCACCATTTAAGTTATGTTCCTGGTGGACTGCAGACGTCGATATCCAAT
AATGCGATCCTAGCGCCGTTGGCCAATATCCCTTCACCGGAACGCACCCA
TGCTCATTGTACAAAAAACTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig110:12842..17913-

>mRNA_S-dermatodea_contig110.656.1 ID=mRNA_S-dermatodea_contig110.656.1|Name=mRNA_S-dermatodea_contig110.656.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2400bp|location=Sequence derived from alignment at S-dermatodea_contig110:12842..17913- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGAGTCAACGAGACGAAGAAGTAGCCGAGGGCTGAGTGCGATTGT
ACTGGCGGCGCTGGCCAGCAGCCAAGGTGCATCCGCCTTCGTGTCACACG
GGGCATTCTCACTACTGTCCGCGTCAGCGCCCGCGAGCGGCGGAGCGAGG
CCGTCGCAATCGCAGCACCAGAGCCGGCGACAACAGACCGACAGAGGGCA
GCTTGGTATCGGAGCGCGCTCTGCTGATGCTCGCCGTACGTCGTCGTCCC
TCGCCGGTGCGCTCGCGGCTGACAACACGTCCGTAGATCACACGGATGGT
TGGAACCCAGTCGAAGGAGTCGAGACTGGGACCGTGTCGCTTGTGGGCTC
GGGGCCGGGTGATCCTGACCTCATGACCGTCGCGGGCGTGAGAGAGCTGG
AGTCGGCCGACCTCGTCATCGCGGACCGGCTCGTGTCCAAGGAGATCCTA
GGGCTGATGGCGGAGTCAACGAGACGAAGAAGTAGCCGAGGGCTGAGTGC
GATTGTACTGGCGGCGCTGGCCAGCAGCCAAGGTGCATCCGCCTTCGTGT
CACACGGGGCATTCTCACTACTGTCCGCGTCAGCGCCCGCGAGCGGCGGA
GCGAGGCCGTCGCAATCGCAGCACCAGAGCCGGCGACAACAGACCGACAG
AGGGCAGCTTGGTATCGGAGCGCGCTCTGCTGATGCTCGCCGTACGTCGT
CGTCCCTCGCCGGTGCGCTCGCGGCTGACAACACGTCCGTAGATCACACG
GATGGTTGGAACCCAGTCGAAGGAGTCGAGACTGGGACCGTGTCGCTTGT
GGGCTCGGGGCCGGGTGATCCTGACCTCATGACCGTCGCGGGCGTGAGAG
AGCTGGAGTCGGCCGACCTCGTCATCGCGGACCGGCTCGTGTCCAAGGAG
ATCCTAGGGCTGGTAAAGGGAGAGCTCCGCGTCGCACGGAAATATCCCGG
TTGCGCGGAGCAGGCCCAACGCGAGATCTACCGCTGGATGCGGGAAGGCC
TCTCGGCCGGGAAACACGTGGTTCGCCTCAAGATCGGCGATCCCTTCATT
TTCGGCAGGGGCGGGGAAGAGGTGCTCGAGATGCGCGAGTTAGGGGTGGA
GCCTAAGGTCGTCCCGGGAATATCGTCGGTTTTTTCGGCGCCGCTCTTGG
GGGGCATTCCTGTGACGCACAGGGGCGTCGCAACCCAGGTAAAGGGAGAG
CTCCGCGTCGCACGGAAATATCCCGGTTGCGCGGAGCAGGCCCAACGCGA
GATCTACCGCTGGATGCGGGAAGGCCTCTCGGCCGGGAAACACGTGGTTC
GCCTCAAGATCGGCGATCCCTTCATTTTCGGCAGGGGCGGGGAAGAGGTG
CTCGAGATGCGCGAGTTAGGGGTGGAGCCTAAGGTCGTCCCGGGAATATC
GTCGGTTTTTTCGGCGCCGCTCTTGGGGGGCATTCCTGTGACGCACAGGG
GCGTCGCAACCCAGGTTACCTTGGGCACCGGGTACGGACAGAACTACGCG
CGTCCGGACATCTGCGACTTCCACCCACAGAAGACCGCGGTGTTTCTAAT
GGCGATCGGCCGCCTGGAGGAGCTGTGCGAAGATCTCGTGCGGCGCTCGT
ACCCCAGAGATTGCCCGGTGGCCATCATTGAGAACGCGTCCACTCCTAGA
CAAAGGTTACCTTGGGCACCGGGTACGGACAGAACTACGCGCGTCCGGAC
ATCTGCGACTTCCACCCACAGAAGACCGCGGTGTTTCTAATGGCGATCGG
CCGCCTGGAGGAGCTGTGCGAAGATCTCGTGCGGCGCTCGTACCCCAGAG
ATTGCCCGGTGGCCATCATTGAGAACGCGTCCACTCCTAGACAAAGGGTG
ATCGCCGCTACCGTTGACACGATATCGGAGGTGGCACGCGGGCTGAAGGT
CAGGGCTCCGGCCACCATCGTCGTCGGGGAGGTGGTAACTGTTCTCCACG
GACCCCAGCAGGGTCTGCTCAGCGACGCCGCTAACGGGATGTTTTCCGGC
GTCGACGCGGACAAGGTCGCGCGGGCCGCGAAACGAGTGGCCGAGCAAAC
CGAGAAGATGAACGGGGAGCTGGCCGCTGAAAAGGGCGTTGCCGTGTCTC
CCACCCCGGTCGCTGGCGCATAGGGTGATCGCCGCTACCGTTGACACGAT
ATCGGAGGTGGCACGCGGGCTGAAGGTCAGGGCTCCGGCCACCATCGTCG
TCGGGGAGGTGGTAACTGTTCTCCACGGACCCCAGCAGGGTCTGCTCAGC
GACGCCGCTAACGGGATGTTTTCCGGCGTCGACGCGGACAAGGTCGCGCG
GGCCGCGAAACGAGTGGCCGAGCAAACCGAGAAGATGAACGGGGAGCTGG
CCGCTGAAAAGGGCGTTGCCGTGTCTCCCACCCCGGTCGCTGGCGCATAG
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