mRNA_S-dermatodea_contig10996.651.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10996.651.1
Unique NamemRNA_S-dermatodea_contig10996.651.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 404 bits (1039), Expect = 3.390e-129
Identity = 340/681 (49.93%), Postives = 383/681 (56.24%), Query Frame = 1 
Query:   91 RVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYAPSSNSAXXXXXXXXXXXXRRGCPRAPAANTGRASSKAVSGGGGEWAPP-RAHKSNGASRRVSKL---SAAAASRQSAGSHRR--------ADHKASPAMA-----------------------ALSPDASAGERSPWTSGESSDSDVSLREAGDISPEGTPGTAVALAGGEDSSDESDADLSDAEASGGKNSNSSAEQGQLLRRHKRGAGARQRAGSADADRQGAEQGCAGVFAKEDGDGDVSVGACGTAPS---AAGQ----GFFSRQQQRQKGGARADARGQSSSQNRTSPFNFIKKTLSFMDR-SNSRHHRTQSTCN-VDMSAGD--PQEXXXXXXXXXXXXXXXXXXXXXXAAGAGDLSHLMVDTSAAARAAAAGVL------PSVTVVTDG-RLGVDPTTAAGNKLLMSSPITPKSSIEXXXXXXXXXXXXXXXX-------QREELGLVEQLTNMVEVFDICDLLRKVSNSNSSRLDKHGGIVKPFGQQQQ---PHHLRNMSVDTDQGLPQSP-QARDAQSGLGSLASMELVRDSSKDWDTLMAGSADVSDLGSTMVQSVAEFFSF 1941
            R+GKRGAPQAFARKL EIL TE+ + I+WNA+G+AF V DVE FSE+ LTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARY P++ +A     XXXXXXX     +                 GG+W+PP R HKS  A+RRV KL   S+ A S  S+G  +         ADH  + A                         A S DA  GERSPWTSGESSDSD +            P   V+ A  E                                                                         G    +PS   AAG+         QQQR  G A A   G +S   ++SPF+F KK  SFM+R S S H+R  ST + VDM+     P E                      A   G +S LMVDTSA ARAAA+GV       P V+V   G R+ +DP+TAAGNK L SSP+TPKSS+E    XXXXXXXXXXXX       QREELGLVEQLTNMVEVFDICDLLRKVS S SSRLDKHG IVKP G       PHHLRNMSVDTDQG+PQ P +   + +GLGSLASMELVRDSSKDWDTLMAGSADVSDLG+TMVQSVAEFFSF
Sbjct:   33 RIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYEPAAAAAKATAKXXXXXXXXXXLKQQAT--------------GGQWSPPARVHKSGAAARRVGKLRNKSSPAGSNGSSGGDKPSSYSARLVADHHMAGAATXXXXXXXGSGVGVGIPPSSADTRAASSDA--GERSPWTSGESSDSDAAAT---------LPQVGVSAASAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRSYSPSRPEAAGECGRDAGGGAQQQRXXGEATAGP-GSASPTRKSSPFSFFKK-FSFMERQSGSGHNRNMSTSSSVDMTTAGALPSERPASS-----------------AGNDGPISSLMVDTSAEARAAASGVSLRGVRPPPVSVTGGGQRIPIDPSTAAGNKALTSSPLTPKSSLEAAAIXXXXXXXXXXXXXXXXXXXQREELGLVEQLTNMVEVFDICDLLRKVSTSGSSRLDKHGAIVKPSGXXXXXXVPHHLRNMSVDTDQGMPQPPLEGEQSPTGLGSLASMELVRDSSKDWDTLMAGSADVSDLGNTMVQSVAEFFSF 661
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: D8LDA5_ECTSI (Putative Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA5_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 1.060e-126
Identity = 344/670 (51.34%), Postives = 395/670 (58.96%), Query Frame = 1 
Query:  115 QAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYAPSSNSAXXXXXXXXXXXXRRGCPRAPAANTGRASSKAVSGGGGEWAPP-RAHKSNGASRRVSKL----SAAAASRQSAGSHRR--------ADH-KASPAMA----------------ALSPDASAG-----ERSPWTSGESSDSDVS--LREAGDISPEGTPGTAVALAGGEDSSDESDADLSDAEASGGKNSNSSAEQGQLL-RRHKRGAGARQRAGSADADRQGAEQGCAGVFAK-EDGDGDVSVGACGTAPSAAGQGFFSRQQQRQKGGARADARGQSSSQNRTSPFNFIKKTLSFMDR-SNSRHHRTQSTCN-VDMSAGD--PQEXXXXXXXXXXXXXXXXXXXXXXAAGAGDLSHLMVDTSAAARAAAAGVL------PSVTVVTDG-RLGVDPTTAAGNKLLMSSPITPKSSIEXXXXXXXXXXXXXXXX-------QREELGLVEQLTNMVEVFDICDLLRKVSNSNSSRLDKHGGIVKPFGQQQQ---PHHLRNMSVDTDQGLPQSPQAR-DAQSGLGSLASMELVRDSSKDWDTLMAGSADVSDLGSTMVQSVAEFFSF 1941
            +AFARKL EILTTE+ + I+WNA+G+AF V DVE FSE+ LTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARY P++ +A XXXXXXXXXXX                        GEW+PP R HKS  A+RRV KL    S A ++  S G  +         ADH +A  A A                A S DA+AG     ERSPWTSGESSDSD +  L +AG  +                                             + R H++   A +R G     RQ  +QG         D  G+V+ G CG      G+G     QQ + GG      G +S   ++SPF+F KK  SF++R S+S H+R  ST + VDM+     P E                      A   G +S LMVDTSA ARAAA+G        P VTV   G R+ +DP+TAAGNK L SSP+TPKSS+E    XXXXXXXXXXXX       QREELGLVEQLTNMVEVFDICDLLRKVS S SSRLDKHG I+KP         PHHLRNMSVDTDQG+PQSP     + +GLGSLASMELVRDSSKDWDTLMAGSADVSDLG+TMVQSVAEFFSF
Sbjct:   12 EAFARKLAEILTTESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYEPAAAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXR--------GEWSPPARVHKSGAAARRVGKLRNKSSPAGSNSSSRGGDKPSSYSARLVADHQRAGVATAXXXXXXXXXXXXVXXPASSADAAAGSSDAGERSPWTSGESSDSDAAATLPQAGVSAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCVGRSHEQQQHALERGGRLAEKRQ--QQGRRSYSPSLRDTSGEVA-GECGRG---GGEGT----QQLRDGGEAPAGAGSASPTRKSSPFSFFKK-FSFVERQSSSGHNRNMSTSSSVDMTTAGALPSERPASSS----------------AGDDGPISPLMVDTSAEARAAASGASLRGVRPPPVTVTGGGQRIPIDPSTAAGNKALTSSPLTPKSSLEAAAMXXXXXXXXXXXXXXXXXXXQREELGLVEQLTNMVEVFDICDLLRKVSTSGSSRLDKHGAIMKPSSXXXXXXXPHHLRNMSVDTDQGMPQSPLGGGQSPTGLGSLASMELVRDSSKDWDTLMAGSADVSDLGNTMVQSVAEFFSF 646
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 147 bits (372), Expect = 3.980e-35
Identity = 71/111 (63.96%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:   88 PRVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYAP 420
            PR G+RGAPQAFARKLYEIL  E   +++WNA G AF VRD++ FS+E L KY+RHSKF+SFQRQLNLY FRKI +G+DAG YAH  FR+ +PD L  VRRS S S+   P
Sbjct:    4 PRTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSSSPSPP 114
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.660e-31
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 1 
Query:   88 PRVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYAPSSN 429
            PR G+RGAPQ F RKLYEIL+TE + +I W   G +F ++++E+F    L KY+RH K+SSFQRQLNLY FRK+ KG D G YAH  F RD+P+ L  VRR I  SA   PS +
Sbjct:    4 PRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRR-IPQSAGAFPSQS 116
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 5.740e-30
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   88 PRVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRR 390
            PR G+RGAPQ F RKLYEILT E   VI W + G +F + ++E F  E L  Y+RH K+SSFQRQLNLY FRKI KG D G YAH  F RD+P+ L  VRR
Sbjct:   96 PRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRR 196
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A6V2VRS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VRS5_HETAK)

HSP 1 Score: 130 bits (328), Expect = 2.440e-29
Identity = 64/115 (55.65%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:   88 PRVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYAPSSNS 432
            PR G RGAPQ FARKLY+IL TE+  VI WN  GTAF ++D++ FS+E L KY+RH+ +SSFQRQ+NLY F+KI +G  AG   H  F R RPD L  V+R    S+ + PSS S
Sbjct:   11 PRTGSRGAPQVFARKLYQILLTESKDVICWNEPGTAFFIKDMDRFSQEVLMKYFRHNNYSSFQRQMNLYGFKKISRGPFAGANMHQQFLRGRPDLLVMVKRKPRSSSPF-PSSRS 124
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.240e-29
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:   79 KSLPRVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGS 405
            K  PR GKRGAPQAFA KL+E+L+ E+  +++W   G AF + D+E F+ E L KY++H+  +SFQRQLNLY FRK +KG D+GG+ H  F+RDRP+ L  VRR++  S
Sbjct:   15 KRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQAS 123
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.790e-29
Identity = 62/105 (59.05%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:   79 KSLPRVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRS 393
            +  PR GKRGAPQAFA KLYEIL  E+  VIAW+  G AF ++D++ F  + L KY+RH K+SSFQRQLNLY FRK  KG D GGY H  F R R D L  VRR+
Sbjct:   71 RKYPRTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRT 175
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.800e-28
Identity = 62/119 (52.10%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:   79 KSLPRVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYAPSSNSA 435
            K  PR GKRGAPQ F RKL+E+L  E  +VI W+ +G  F ++D+++F+ E+L +Y++H KF+SFQRQLNLY FRKI KG   G Y HP F+RD P+ L  VRR+     +  P SNSA
Sbjct:   46 KRYPRTGKRGAPQVFPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKHHKFTSFQRQLNLYGFRKIAKGERCGYYVHPHFQRDHPEWLSKVRRTPQ-PGKSTPRSNSA 163
[Close]
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.040e-28
Identity = 62/111 (55.86%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:   88 PRVGKRGAPQAFARKLYEILTTEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYAP 420
            PR GKRGAPQ FARKLYEIL  E    I+W   GT+F ++++++F    L KY+RH K+SSFQRQLNLY FRKI KG+DAG YAH  F R +P+ L+ VRR    S+   P
Sbjct:  158 PRTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRRMPQSSSSPVP 268
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10996.651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMN3_9PHAE3.390e-12949.93HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D8LDA5_ECTSI1.060e-12651.34Putative Heat Shock transcription factor n=1 Tax=E... [more]
A0A6V1QFS1_HETAK3.980e-3563.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BSE7_9STRA1.660e-3155.26Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2G7U9_9STRA5.740e-3059.41Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6V2VRS5_HETAK2.440e-2955.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YGA3_9STRA3.240e-2953.21HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7S2WKC6_9STRA4.790e-2959.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9YBQ9_9STRA1.800e-2852.10Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WU52_9STRA3.040e-2855.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10996contigS-dermatodea_contig10996:1598..5627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue5.8e-22
Seed eggNOG ortholog2850.Phatr43051
Preferred nameSFL1
GOsGO:0000122,GO:0000128,GO:0000228,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001085,GO:0001103,GO:0001558,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006355,GO:0006357,GO:0008134,GO:0008150,GO:0009268,GO:0009405,GO:0009607,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016458,GO:0019219,GO:0019222,GO:0030308,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0035690,GO:0036176,GO:0036177,GO:0036178,GO:0036180,GO:0036244,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043900,GO:0043901,GO:0044182,GO:0044212,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045892,GO:0045893,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0051716,GO:0060255,GO:0060256,GO:0060257,GO:0060258,GO:0065007,GO:0070013,GO:0070491,GO:0070784,GO:0070785,GO:0070887,GO:0071214,GO:0071467,GO:0080090,GO:0097159,GO:0098630,GO:0098743,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1900460,GO:1900462,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000217,GO:2000218,GO:2000220,GO:2000221,GO:2001141
EggNOG free text desc.heat shock factor
EggNOG OGs2XHAM@2836,COG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1944
Cds size1944
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.5940676-CDS-S-dermatodea_contig10996:1597..23321622924182.5940676-CDS-S-dermatodea_contig10996:1597..2332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10996 1598..2332 -
1694079074.778622-CDS-S-dermatodea_contig10996:1597..23321694079074.778622-CDS-S-dermatodea_contig10996:1597..2332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10996 1598..2332 -
1622924182.6093519-CDS-S-dermatodea_contig10996:4418..56271622924182.6093519-CDS-S-dermatodea_contig10996:4418..5627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10996 4419..5627 -
1694079074.7948282-CDS-S-dermatodea_contig10996:4418..56271694079074.7948282-CDS-S-dermatodea_contig10996:4418..5627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10996 4419..5627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10996.651.1prot_S-dermatodea_contig10996.651.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10996 1598..5627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10996.651.1

>prot_S-dermatodea_contig10996.651.1 ID=prot_S-dermatodea_contig10996.651.1|Name=mRNA_S-dermatodea_contig10996.651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=648bp
MASTEPGHIAGSAAAVAAAAAAASSAKSLPRVGKRGAPQAFARKLYEILT
TEADSVIAWNADGTAFHVRDVESFSEETLTKYYRHSKFSSFQRQLNLYSF
RKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGSARYAPSSNSAASKAT
AAAAAAARRGCPRAPAANTGRASSKAVSGGGGEWAPPRAHKSNGASRRVS
KLSAAAASRQSAGSHRRADHKASPAMAALSPDASAGERSPWTSGESSDSD
VSLREAGDISPEGTPGTAVALAGGEDSSDESDADLSDAEASGGKNSNSSA
EQGQLLRRHKRGAGARQRAGSADADRQGAEQGCAGVFAKEDGDGDVSVGA
CGTAPSAAGQGFFSRQQQRQKGGARADARGQSSSQNRTSPFNFIKKTLSF
MDRSNSRHHRTQSTCNVDMSAGDPQEQEQQQQQPAIAAETAPSSSVSSAA
GAGDLSHLMVDTSAAARAAAAGVLPSVTVVTDGRLGVDPTTAAGNKLLMS
SPITPKSSIEAAAAAAAAMPPPPKREQREELGLVEQLTNMVEVFDICDLL
RKVSNSNSSRLDKHGGIVKPFGQQQQPHHLRNMSVDTDQGLPQSPQARDA
QSGLGSLASMELVRDSSKDWDTLMAGSADVSDLGSTMVQSVAEFFSF*
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mRNA from alignment at S-dermatodea_contig10996:1598..5627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10996.651.1 ID=mRNA_S-dermatodea_contig10996.651.1|Name=mRNA_S-dermatodea_contig10996.651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4030bp|location=Sequence derived from alignment at S-dermatodea_contig10996:1598..5627- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCAGCACGGAACCAGGGCACATCGCAGGAAGCGCGGCGGCCGTCGC
TGCCGCCGCGGCCGCCGCGTCCTCGGCGAAGTCTCTGCCGCGCGTGGGCA
AGCGCGGCGCACCGCAGGCCTTCGCGCGCAAGCTGTACGAGATCCTCACA
ACCGAAGCCGATTCGGTGATCGCCTGGAACGCGGACGGCACCGCATTCCA
TGTCCGAGACGTGGAGAGCTTCAGCGAAGAAACCCTCACCAAGTACTACA
GACACTCCAAGTTCTCCAGCTTTCAGCGCCAGCTCAACCTGTACTCATTC
CGCAAGATCGTCAAGGGGGCGGATGCCGGAGGCTACGCCCACCCCATGTT
TCGTCGCGACAGGCCAGACGATCTCTACCACGTGAGACGCTCGATATCCG
GAAGCGCCAGGTACGCGCCCTCGAGCAACTCGGCTGCCTCGAAGGCCACC
GCGGCCGCCGCGGCCGCCGCACGGCGCGGCTGCCCCCGCGCTCCAGCCGC
GAACACGGGCCGCGCGTCCTCGAAGGCCGTTAGCGGAGGGGGCGGGGAGT
GGGCGCCGCCGCGAGCGCACAAGTCGAACGGGGCGTCTCGGAGGGTGAGC
AAGCTCTCCGCCGCCGCCGCATCCCGGCAGAGCGCGGGCTCTCACCGTCG
CGCGGACCACAAGGCCAGCCCAGCGATGGCCGCGTTGTCTCCGGACGCGT
CCGCGGGGGAGCGGTCCCCTTGGACGTCGGGAGAGAGCAGTGACAGCGAC
GTGAGCCTGAGGGAGGCGGGAGACATCTCCCCCGAGGGAACACCCGGCAC
TGCTGTGGCGCTGGCGGGCGGGGAGGATTCCTCTGATGAATCGGATGCGG
ACCTGTCCGATGCGGAGGCCTCCGGAGGGAAAAACAGCAACAGCAGCGCA
GAGCAAGGGCAGTTGCTGCGCAGGCATAAGCGCGGCGCCGGGGCGAGACA
GCGAGCCGGCAGCGCTGACGCCGATCGCCAGGGCGCCGAGCAGGGGTGTG
CGGGCGTGTTCGCGAAGGAGGATGGCGACGGCGACGTCTCGGTGGGAGCG
TGTGGCACTGCGCCGAGCGCTGCCGGGCAGGGTTTTTTTTCGAGGCAACA
ACAGCGGCAAAAAGGGGGAGCCAGGGCGGATGCCCGAGGACAGTCATCTT
CTCAAAACCGAACCTCACCATTTAACTTTATCAAGAAGACCCTCAGCTTC
ATGGACAGGGTGAGACACGGAGAGGTGTGGGTTGTGTGTGTGTGTGTGTG
TGTGTGTTGTACGTATGCGCAGGTGCAGCTGCGGCACTAGTTTTGTTTGG
TTCGGCATGGTCGTGTGCTCGCGGGGGGATGGTCTCGTGCACACACAGCA
TCAACAAACAAGCTGGAAACAAGGGGCAGGGAAAGTCATTTTTTGCCTGT
GAACCCTCCCTCGTCCTGCCTTCACTTCGCAGTCATTTACTATTATTATA
TTATACTATTTTTAATGTAGTACTAGGTATACGTAAATACATTCAAGTTT
GAAAAGTTTTGGCTTCTGTTTTTTTTTCCCCTTTTCTTTTAGTTATCCGT
CATATATTTTTTTGTGTCTTCTTGTCATTTTTTTTCTTTCATGTTTGTGT
TTGCTCTATCCAATCATGACACGTGGGACAGGCACAGATATAGTCGCGCG
AAGCACAAACTTCGCCCTCCTCCCTCTGGCTCCTGTCCATAGATGATTTA
CAGCAAGCAGTACAGCCTCCGCAGCGTCTCCAACATTTTGTGTTCACTAG
GCGACTGCCGTGCTTGCGTGCCTGTTTCCTGTCCAACCATACGTGTCAGC
GGCCCCTGTCCTTTAATTCATACGCGCAACAACCTCTTGGGTTTTCGATC
GACACACAAAACCATTTTTTGCTGGTTTTTCCTGCTTTTTTAGTGTGTTC
CGAAAATTCATCGGGTATGCATTATATTTACAGCAGTATATCGTATACTG
TTTTTATAATGTACCAGTACGATACACGGGAGGTCACATTCCGATTCGTT
CTATAATATATTTTAACTGTGATATTTTTTAACAAGATACAAAATATGCA
CACATGTTTCGTGGTTGCGTGCATTCGACGTGAGTATCATGATATTCGTT
GCGCATGTGAAACGCACGTTGTAGAATACGTGCATAACACAGCAGCAGCA
TCTAGTACCCTAGTACAGCCCAAAACACACACACGTGTCGTGCTGCTAGA
ATTCCGGCCGGAGCCATGGGGGGCTGGCTCAATCGAGAGAAATCGATACA
GTATCATACAATGAAACAAAGTTACGTAGTATGTTGGTAGGAAAGGAACA
TTTACTATTATTGGCTCATAAACACGCAGCAAAGATACACATACATCACC
AGCCTGTATGATACCATCGTCATATAGCAACATACATGATAGGACACCAC
ACCACAGCATCGTATGTAACAAAGGTGTATGATAGCTTGGACCATCTTCC
ATCTTTCTAAGGTGGGACCCCAACGCTCACTACAGTATATGTTTTCTGAA
ATCTTGTATGTTTTTTTTTGTGGGGGGTGGAGGGGCGCAAGGGACATGCA
TTGGATTGTGCATATTGGGCTTGCGGGGGCAGTAAATGTTGAAGCTGTGG
TTCTGTCAGTGGCAACCAGTTGGTTGAGTTTATTGTGCTAGAGGCGGTAT
TTTAGTGATCGTTCGGGTTCGTATTTGATTTTCGGAACGCGTTTTTTCTG
TTTCCTTTCGTTTTGATTGAATCATATGATATCACATTGGTCACTGACTA
CAGCTGTGCGTGTCATTTGTTTTTATGGTATGCCGCCGCGCGCCTGGTGG
TATCCCACAAGAAGCAATAACTACAACAAATCCCGTTAGGTTTGTCGCGT
GTGACCCCCGCCCCCCCGCCGCGCGGCAGACTTGAACAAGCACACCAAGG
CGCGCGGTGGATTATGTTATCCCCGTCATTTTTATCGGAATCTCTAAAGC
AAGAACCGCGCAGCAGCAGGGCAATCAATTGACCATTCAAATGTCAATAG
TCAGATTTTTCAGCTTCACGAATTTAGTTGTTACCGCCACAGCCCTGCAC
CGCACCGCACCGCGCGGCCATTTTTCCCCCTTTCGCCACCTCACGCACAC
CCGTGCACAGAGCTCTCTAACTGGACGTGATGTGATACTATTAATATCTA
TGATATAATATGTGTGAACGATCGAGTCGCTAACCTCTCAACAAACACCC
CGCCCTTTTTCGCTTCCCTTTCTTTCCTCCTGTTGTGCCCGCAAACATTA
TATATATAATATATACATTCATCTCCGAACACCCAAAACAAGCAGTCAAA
CAGCCGGCACCACAGAACGCAGAGCACTTGCAACGTCGACATGTCCGCCG
GGGACCCCCAGGAGCAGGAACAGCAGCAGCAGCAGCCTGCCATCGCCGCG
GAGACGGCCCCGTCTTCCTCCGTCTCGAGCGCCGCTGGCGCTGGCGACTT
GTCCCACCTCATGGTGGACACCTCCGCTGCAGCCCGTGCCGCCGCTGCAG
GCGTGCTCCCGTCCGTTACCGTGGTGACGGACGGAAGGTTAGGGGTGGAT
CCCACTACCGCGGCGGGCAACAAATTGTTGATGTCGTCGCCGATAACGCC
GAAATCTTCGATCGAAGCCGCCGCTGCCGCGGCCGCGGCCATGCCTCCGC
CGCCAAAGCGCGAGCAGCGGGAGGAGCTTGGTCTGGTGGAGCAGCTGACG
AACATGGTGGAGGTGTTCGACATCTGCGACCTGCTTCGCAAGGTGTCGAA
CTCCAACTCGTCTCGGCTGGACAAGCACGGAGGCATCGTAAAACCGTTCG
GACAGCAGCAGCAGCCGCACCACCTGAGGAATATGAGCGTGGATACAGAC
CAGGGGCTGCCGCAGAGCCCGCAGGCGAGGGATGCGCAGTCTGGGCTCGG
GAGCCTCGCGTCGATGGAGCTCGTGAGAGACTCGAGCAAGGACTGGGACA
CGCTTATGGCCGGATCCGCCGACGTAAGCGATCTCGGCAGCACGATGGTG
CAGAGCGTGGCGGAGTTTTTTTCGTTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10996:1598..5627-

>mRNA_S-dermatodea_contig10996.651.1 ID=mRNA_S-dermatodea_contig10996.651.1|Name=mRNA_S-dermatodea_contig10996.651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3888bp|location=Sequence derived from alignment at S-dermatodea_contig10996:1598..5627- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCAGCACGGAACCAGGGCACATCGCAGGAAGCGCGGCGGCCGTCGC
TGCCGCCGCGGCCGCCGCGTCCTCGGCGAAGTCTCTGCCGCGCGTGGGCA
AGCGCGGCGCACCGCAGGCCTTCGCGCGCAAGCTGTACGAGATCCTCACA
ACCGAAGCCGATTCGGTGATCGCCTGGAACGCGGACGGCACCGCATTCCA
TGTCCGAGACGTGGAGAGCTTCAGCGAAGAAACCCTCACCAAGTACTACA
GACACTCCAAGTTCTCCAGCTTTCAGCGCCAGCTCAACCTGTACTCATTC
CGCAAGATCGTCAAGGGGGCGGATGCCGGAGGCTACGCCCACCCCATGTT
TCGTCGCGACAGGCCAGACGATCTCTACCACGTGAGACGCTCGATATCCG
GAAGCGCCAGGTACGCGCCCTCGAGCAACTCGGCTGCCTCGAAGGCCACC
GCGGCCGCCGCGGCCGCCGCACGGCGCGGCTGCCCCCGCGCTCCAGCCGC
GAACACGGGCCGCGCGTCCTCGAAGGCCGTTAGCGGAGGGGGCGGGGAGT
GGGCGCCGCCGCGAGCGCACAAGTCGAACGGGGCGTCTCGGAGGGTGAGC
AAGCTCTCCGCCGCCGCCGCATCCCGGCAGAGCGCGGGCTCTCACCGTCG
CGCGGACCACAAGGCCAGCCCAGCGATGGCCGCGTTGTCTCCGGACGCGT
CCGCGGGGGAGCGGTCCCCTTGGACGTCGGGAGAGAGCAGTGACAGCGAC
GTGAGCCTGAGGGAGGCGGGAGACATCTCCCCCGAGGGAACACCCGGCAC
TGCTGTGGCGCTGGCGGGCGGGGAGGATTCCTCTGATGAATCGGATGCGG
ACCTGTCCGATGCGGAGGCCTCCGGAGGGAAAAACAGCAACAGCAGCGCA
GAGCAAGGGCAGTTGCTGCGCAGGCATAAGCGCGGCGCCGGGGCGAGACA
GCGAGCCGGCAGCGCTGACGCCGATCGCCAGGGCGCCGAGCAGGGGTGTG
CGGGCGTGTTCGCGAAGGAGGATGGCGACGGCGACGTCTCGGTGGGAGCG
TGTGGCACTGCGCCGAGCGCTGCCGGGCAGGGTTTTTTTTCGAGGCAACA
ACAGCGGCAAAAAGGGGGAGCCAGGGCGGATGCCCGAGGACAGTCATCTT
CTCAAAACCGAACCTCACCATTTAACTTTATCAAGAAGACCCTCAGCTTC
ATGGACAGGATGGCCAGCACGGAACCAGGGCACATCGCAGGAAGCGCGGC
GGCCGTCGCTGCCGCCGCGGCCGCCGCGTCCTCGGCGAAGTCTCTGCCGC
GCGTGGGCAAGCGCGGCGCACCGCAGGCCTTCGCGCGCAAGCTGTACGAG
ATCCTCACAACCGAAGCCGATTCGGTGATCGCCTGGAACGCGGACGGCAC
CGCATTCCATGTCCGAGACGTGGAGAGCTTCAGCGAAGAAACCCTCACCA
AGTACTACAGACACTCCAAGTTCTCCAGCTTTCAGCGCCAGCTCAACCTG
TACTCATTCCGCAAGATCGTCAAGGGGGCGGATGCCGGAGGCTACGCCCA
CCCCATGTTTCGTCGCGACAGGCCAGACGATCTCTACCACGTGAGACGCT
CGATATCCGGAAGCGCCAGGTACGCGCCCTCGAGCAACTCGGCTGCCTCG
AAGGCCACCGCGGCCGCCGCGGCCGCCGCACGGCGCGGCTGCCCCCGCGC
TCCAGCCGCGAACACGGGCCGCGCGTCCTCGAAGGCCGTTAGCGGAGGGG
GCGGGGAGTGGGCGCCGCCGCGAGCGCACAAGTCGAACGGGGCGTCTCGG
AGGGTGAGCAAGCTCTCCGCCGCCGCCGCATCCCGGCAGAGCGCGGGCTC
TCACCGTCGCGCGGACCACAAGGCCAGCCCAGCGATGGCCGCGTTGTCTC
CGGACGCGTCCGCGGGGGAGCGGTCCCCTTGGACGTCGGGAGAGAGCAGT
GACAGCGACGTGAGCCTGAGGGAGGCGGGAGACATCTCCCCCGAGGGAAC
ACCCGGCACTGCTGTGGCGCTGGCGGGCGGGGAGGATTCCTCTGATGAAT
CGGATGCGGACCTGTCCGATGCGGAGGCCTCCGGAGGGAAAAACAGCAAC
AGCAGCGCAGAGCAAGGGCAGTTGCTGCGCAGGCATAAGCGCGGCGCCGG
GGCGAGACAGCGAGCCGGCAGCGCTGACGCCGATCGCCAGGGCGCCGAGC
AGGGGTGTGCGGGCGTGTTCGCGAAGGAGGATGGCGACGGCGACGTCTCG
GTGGGAGCGTGTGGCACTGCGCCGAGCGCTGCCGGGCAGGGTTTTTTTTC
GAGGCAACAACAGCGGCAAAAAGGGGGAGCCAGGGCGGATGCCCGAGGAC
AGTCATCTTCTCAAAACCGAACCTCACCATTTAACTTTATCAAGAAGACC
CTCAGCTTCATGGACAGGTCAAACAGCCGGCACCACAGAACGCAGAGCAC
TTGCAACGTCGACATGTCCGCCGGGGACCCCCAGGAGCAGGAACAGCAGC
AGCAGCAGCCTGCCATCGCCGCGGAGACGGCCCCGTCTTCCTCCGTCTCG
AGCGCCGCTGGCGCTGGCGACTTGTCCCACCTCATGGTGGACACCTCCGC
TGCAGCCCGTGCCGCCGCTGCAGGCGTGCTCCCGTCCGTTACCGTGGTGA
CGGACGGAAGGTTAGGGGTGGATCCCACTACCGCGGCGGGCAACAAATTG
TTGATGTCGTCGCCGATAACGCCGAAATCTTCGATCGAAGCCGCCGCTGC
CGCGGCCGCGGCCATGCCTCCGCCGCCAAAGCGCGAGCAGCGGGAGGAGC
TTGGTCTGGTGGAGCAGCTGACGAACATGGTGGAGGTGTTCGACATCTGC
GACCTGCTTCGCAAGGTGTCGAACTCCAACTCGTCTCGGCTGGACAAGCA
CGGAGGCATCGTAAAACCGTTCGGACAGCAGCAGCAGCCGCACCACCTGA
GGAATATGAGCGTGGATACAGACCAGGGGCTGCCGCAGAGCCCGCAGGCG
AGGGATGCGCAGTCTGGGCTCGGGAGCCTCGCGTCGATGGAGCTCGTGAG
AGACTCGAGCAAGGACTGGGACACGCTTATGGCCGGATCCGCCGACGTAA
GCGATCTCGGCAGCACGATGGTGCAGAGCGTGGCGGAGTTTTTTTCGTTC
TGATCAAACAGCCGGCACCACAGAACGCAGAGCACTTGCAACGTCGACAT
GTCCGCCGGGGACCCCCAGGAGCAGGAACAGCAGCAGCAGCAGCCTGCCA
TCGCCGCGGAGACGGCCCCGTCTTCCTCCGTCTCGAGCGCCGCTGGCGCT
GGCGACTTGTCCCACCTCATGGTGGACACCTCCGCTGCAGCCCGTGCCGC
CGCTGCAGGCGTGCTCCCGTCCGTTACCGTGGTGACGGACGGAAGGTTAG
GGGTGGATCCCACTACCGCGGCGGGCAACAAATTGTTGATGTCGTCGCCG
ATAACGCCGAAATCTTCGATCGAAGCCGCCGCTGCCGCGGCCGCGGCCAT
GCCTCCGCCGCCAAAGCGCGAGCAGCGGGAGGAGCTTGGTCTGGTGGAGC
AGCTGACGAACATGGTGGAGGTGTTCGACATCTGCGACCTGCTTCGCAAG
GTGTCGAACTCCAACTCGTCTCGGCTGGACAAGCACGGAGGCATCGTAAA
ACCGTTCGGACAGCAGCAGCAGCCGCACCACCTGAGGAATATGAGCGTGG
ATACAGACCAGGGGCTGCCGCAGAGCCCGCAGGCGAGGGATGCGCAGTCT
GGGCTCGGGAGCCTCGCGTCGATGGAGCTCGTGAGAGACTCGAGCAAGGA
CTGGGACACGCTTATGGCCGGATCCGCCGACGTAAGCGATCTCGGCAGCA
CGATGGTGCAGAGCGTGGCGGAGTTTTTTTCGTTCTGA
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