mRNA_S-dermatodea_contig10995.649.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE) HSP 1 Score: 154 bits (389), Expect = 2.560e-43 Identity = 74/110 (67.27%), Postives = 79/110 (71.82%), Query Frame = 1
Query: 1 EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERR-----------------GGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
E WVYPSEQQYYNAIKRKGYKASA DMPSTLAIHNAVNEKGWEMV++WER G APKLLRFTGRP+D SPKAW+K+ LLGY PPFDR
Sbjct: 221 EAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 330
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI) HSP 1 Score: 149 bits (375), Expect = 5.170e-41 Identity = 78/147 (53.06%), Postives = 83/147 (56.46%), Query Frame = 1
Query: 1 EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWER-------------------------------RGGEG-----------------------DVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
E WVYPSEQQYYNAIKRKGYKASA DMPSTLAIHNAVNEKGWEMV++WER RGGEG VPAPKL RFTGRP+D SPKAW+K+ L GY PPFDR
Sbjct: 207 EAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDR 353
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA) HSP 1 Score: 132 bits (333), Expect = 6.210e-37 Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 1
Query: 7 SAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWER-RGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
+ WVYPSEQQY+NA+KRKG++A D+P LAIHNAVNE+GW V++WE RGG+ PKL F GRP D+SPKAW KTN+LGY PPFDR
Sbjct: 47 NVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD-----PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDR 133
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A7S1UN93_9STRA (Holocytochrome c-type synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN93_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.650e-32 Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
WVYPSEQQ+YNA+KRKG++A + MP + IHNAVNE+GW V WE G P P+L+RF GRPKD+SPKA+L T +LGY PPFDR
Sbjct: 113 WVYPSEQQFYNAMKRKGWEADESTMPLVVRIHNAVNERGWSEVCKWEALHG---CPNPRLVRFLGRPKDISPKAFLNTYILGYRPPFDR 198
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A4S929_OSTLU (Holocytochrome c-type synthase (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S929_OSTLU) HSP 1 Score: 112 bits (281), Expect = 4.900e-30 Identity = 56/93 (60.22%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 1 EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
E + W YPSE+ +YNA+KRKG+K SA DM + IHNAVNEK W V WERR E P PKLL+F GRPKD SPKA N LGY PFDR
Sbjct: 1 EEATWRYPSEEMFYNAMKRKGWKPSANDMEHVVKIHNAVNEKAWAHVMAWERRHCER-CPDPKLLKFRGRPKDYSPKAQF-LNFLGYKLPFDR 91
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA) HSP 1 Score: 116 bits (291), Expect = 5.350e-30 Identity = 54/89 (60.67%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
WVYPSEQQYYNA+KRKGY S D+P+ L IHN VNEKGW VK+WE G P PKL +F G+P +SPKA L N++GY PFDR
Sbjct: 109 WVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSG---FPNPKLKKFMGKPTQLSPKARL-LNMIGYSKPFDR 193
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A5M6BU68_9TREE (Holocytochrome c-type synthase n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BU68_9TREE) HSP 1 Score: 113 bits (283), Expect = 5.320e-29 Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 1 EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
E WVYPSEQQ++NA+ RK +K A DM + + IHNAVNEK WE V WE G PKL+ F G+PK+ +PKAW+KT LGY PPFDR
Sbjct: 116 EAGNWVYPSEQQFFNAMLRKNHKPKAQDMRTVVPIHNAVNEKAWEEVLRWESPFGSERCGGPKLVSFVGKPKERTPKAWIKT-ALGYTPPFDR 207
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A3M7KZQ7_AUXPR (Holocytochrome c-type synthase n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KZQ7_AUXPR) HSP 1 Score: 110 bits (275), Expect = 7.600e-28 Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
W YPSEQ +YNA++RKG+ S DM + +AIHNAVNE+ W V+ WE G PAP LLRF GRP DVSPKA L N LGY PFDR
Sbjct: 110 WTYPSEQMFYNAMRRKGWTPSEEDMTAVVAIHNAVNERAWREVRAWEAAAG---CPAPTLLRFRGRPADVSPKARL-LNALGYRLPFDR 194
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: B8C628_THAPS (Holocytochrome c-type synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C628_THAPS) HSP 1 Score: 107 bits (267), Expect = 1.160e-27 Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
W+YPSEQQ+YNA+ RKGYK +PS L IHNAVNE+ W V WE+ D PKL++F GRPKD+SPKAW + +L PFDR
Sbjct: 24 WMYPSEQQFYNAMLRKGYKPPIESIPSVLQIHNAVNERSWLQVCKWEKE--LHDNADPKLVKFVGRPKDLSPKAWWNSRVLMTQEPFDR 110
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: K0SEF6_THAOC (Holocytochrome c-type synthase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEF6_THAOC) HSP 1 Score: 110 bits (274), Expect = 1.980e-27 Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERR-GGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
W YPSEQQ+YNA+ RKGY+ +PS L IHNAVNE+ W V+ WER G GD P+L +F GRPKD+SP+AW +N+L PFDR
Sbjct: 138 WQYPSEQQFYNAMFRKGYRPPVESIPSVLQIHNAVNERSWAEVRKWERDLHGNGD---PRLAKFIGRPKDLSPRAWFNSNILMTQAPFDR 224 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10995.649.1 >prot_S-dermatodea_contig10995.649.1 ID=prot_S-dermatodea_contig10995.649.1|Name=mRNA_S-dermatodea_contig10995.649.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWback to top mRNA from alignment at S-dermatodea_contig10995:5987..6337+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10995.649.1 ID=mRNA_S-dermatodea_contig10995.649.1|Name=mRNA_S-dermatodea_contig10995.649.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at S-dermatodea_contig10995:5987..6337+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10995:5987..6337+ >mRNA_S-dermatodea_contig10995.649.1 ID=mRNA_S-dermatodea_contig10995.649.1|Name=mRNA_S-dermatodea_contig10995.649.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig10995:5987..6337+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |