mRNA_S-dermatodea_contig10987.647.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10987.647.1
Unique NamemRNA_S-dermatodea_contig10987.647.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: U5P0U3_9APIC (Poly-ubiquitin (Fragment) n=1 Tax=Plasmodium sp. 1 JS-2013 TaxID=1410047 RepID=U5P0U3_9APIC)

HSP 1 Score: 129 bits (325), Expect = 5.000e-35
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:  618 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 818
            KTITLDVEPSDTIE VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:    3 KTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 69
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BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: A0A6H5KKB6_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.240e-35
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = -1 
Query:  621 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 818
            KTITLDVEPSDTI+GVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
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BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: A0A6H5K2A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A1_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.390e-34
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = -1 
Query:  618 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 818
            KTITLDVEPSDTI+GVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:  164 KTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 230
[Close]
BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: A0A2J8R6B5_PONAB (UBB isoform 2 n=29 Tax=Euteleostomi TaxID=117571 RepID=A0A2J8R6B5_PONAB)

HSP 1 Score: 128 bits (321), Expect = 2.490e-34
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:  618 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 818
            KTITL+VEPSDTIE VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 77
[Close]
BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: A0A6I9JZ21_CHRAS (polyubiquitin-B-like n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9JZ21_CHRAS)

HSP 1 Score: 128 bits (321), Expect = 2.490e-34
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:  618 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 818
            KTITL+VEPSDTIE VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 77
[Close]
BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: UPI001A9D1EB7 (polyubiquitin-B n=1 Tax=Ictidomys tridecemlineatus TaxID=43179 RepID=UPI001A9D1EB7)

HSP 1 Score: 128 bits (321), Expect = 2.800e-34
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:  618 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 818
            KTITL+VEPSDTIE VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:   15 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 81
[Close]
BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: Q32YL4_9EUKA (Polyubiquitin (Fragment) n=3 Tax=Cercozoa TaxID=136419 RepID=Q32YL4_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 2.990e-34
Identity = 67/83 (80.72%), Postives = 69/83 (83.13%), Query Frame = -1 
Query:  570 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC*TSLVALYDGRGELFD 818
            KTITLDVEPSDTIE VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG     V    G+    D
Sbjct:   11 KTITLDVEPSDTIEAVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSMQIFVKTLTGKTITLD 93
[Close]
BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: A0A8J6ANE1_GALPY (Ubiquitin n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6ANE1_GALPY)

HSP 1 Score: 128 bits (321), Expect = 3.140e-34
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:  618 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 818
            KTITL+VEPSDTIE VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:   19 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 85
[Close]
BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: UPI001CFCEA53 (ubiquitin n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFCEA53)

HSP 1 Score: 128 bits (321), Expect = 3.230e-34
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:  618 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 818
            KTITL+VEPSDTIE VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 77
[Close]
BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Match: A0A6T8MZ47_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8MZ47_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.370e-34
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:  618 KTITLDVEPSDTIEGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 818
            KTITLDVEPSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:   33 KTITLDVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 99
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10987.647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U5P0U3_9APIC5.000e-3597.01Poly-ubiquitin (Fragment) n=1 Tax=Plasmodium sp. 1... [more]
A0A6H5KKB6_9PHAE7.240e-3598.48Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A6H5K2A1_9PHAE2.390e-3498.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2J8R6B5_PONAB2.490e-3495.52UBB isoform 2 n=29 Tax=Euteleostomi TaxID=117571 R... [more]
A0A6I9JZ21_CHRAS2.490e-3495.52polyubiquitin-B-like n=1 Tax=Chrysochloris asiatic... [more]
UPI001A9D1EB72.800e-3495.52polyubiquitin-B n=1 Tax=Ictidomys tridecemlineatus... [more]
Q32YL4_9EUKA2.990e-3480.72Polyubiquitin (Fragment) n=3 Tax=Cercozoa TaxID=13... [more]
A0A8J6ANE1_GALPY3.140e-3495.52Ubiquitin n=1 Tax=Galemys pyrenaicus TaxID=202257 ... [more]
UPI001CFCEA533.230e-3495.52ubiquitin n=1 Tax=Gracilinanus agilis TaxID=191870... [more]
A0A6T8MZ47_9STRA3.370e-3495.52Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10987contigS-dermatodea_contig10987:6991..7808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue1e-16
Seed eggNOG ortholog4533.OB05G13910.1
EggNOG OGs2B1QH@1,2S0AY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size818
Cds size540
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.4313006-UTR-S-dermatodea_contig10987:6990..72681622924182.4313006-UTR-S-dermatodea_contig10987:6990..7268Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10987 6991..7268 +
1694079074.6927485-UTR-S-dermatodea_contig10987:6990..72681694079074.6927485-UTR-S-dermatodea_contig10987:6990..7268Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10987 6991..7268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.4446974-CDS-S-dermatodea_contig10987:7268..78081622924182.4446974-CDS-S-dermatodea_contig10987:7268..7808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 7269..7808 +
1694079074.704503-CDS-S-dermatodea_contig10987:7268..78081694079074.704503-CDS-S-dermatodea_contig10987:7268..7808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 7269..7808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10987.647.1prot_S-dermatodea_contig10987.647.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10987 7269..7808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10987.647.1

>prot_S-dermatodea_contig10987.647.1 ID=prot_S-dermatodea_contig10987.647.1|Name=mRNA_S-dermatodea_contig10987.647.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=180bp
MKNARANAAGSKQLARHRVDNKQTHQENNIYTFLFASMSNDSTSQPRQLT
RTKPRIRPPSSYRGSPLQTRLKTQPFQLMTQPPPPAFTPHRKQPHHAVEK
FSSPIIQCHQRSSASAAQPEHQVEGRLLLDVVVREGAAVLQLLAGEDEAL
LVRGDALLVLDLLLHALDRVRRLHVERDRL
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mRNA from alignment at S-dermatodea_contig10987:6991..7808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10987.647.1 ID=mRNA_S-dermatodea_contig10987.647.1|Name=mRNA_S-dermatodea_contig10987.647.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=818bp|location=Sequence derived from alignment at S-dermatodea_contig10987:6991..7808+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGACGTACTGCTGTGTTGTATGAGAGCCAGTTGAAATTTGTACCCGATCT
GACGCGACAAAAAAAAATCATCCGTCTAAAGTGCATTTCATAGAAACACC
AACGATGAACCTTTTAAAGGACAGTTGTTCATATCATATCCATGTAAAAA
TTGCCTCAGCTTCAAGCAAGAGCGCGGCGAACACCGCCAGTCATCATAAT
GCGCGAAAACACTATATAGTATATATGTCGGTGCAGCAAGACCCATGAAT
GCACTCATTTCGTGTGTGAGTTGCATGCATGAAGAACGCGCGCGCGAACG
CTGCGGGCAGCAAACAACTCGCGCGGCACAGAGTAGACAATAAACAAACA
CATCAGGAAAACAATATTTATACTTTTTTATTTGCTTCGATGTCAAACGA
CTCGACTTCACAACCACGGCAGCTGACTCGGACCAAGCCCCGTATCCGCC
CCCCATCATCCTATCGAGGATCGCCGCTCCAAACAAGGCTCAAGACACAA
CCTTTTCAACTGATGACACAGCCACCGCCCCCTGCATTTACACCTCATCG
CAAGCAACCGCATCACGCAGTCGAAAAGTTCTCCTCGCCCATCATACAAT
GCCACCAAAGAAGTTCAGCATCCGCCGCGCAGCCGGAGCACCAGGTGGAG
GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCCA
GCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCC
TTGTCCTGGATCTTCTGCTTCACGCCCTCGATCGTGTCAGACGGCTCCAC
GTCGAGCGTGATCGTCTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10987:6991..7808+

>mRNA_S-dermatodea_contig10987.647.1 ID=mRNA_S-dermatodea_contig10987.647.1|Name=mRNA_S-dermatodea_contig10987.647.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at S-dermatodea_contig10987:6991..7808+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGAACGCGCGCGCGAACGCTGCGGGCAGCAAACAACTCGCGCGGCA
CAGAGTAGACAATAAACAAACACATCAGGAAAACAATATTTATACTTTTT
TATTTGCTTCGATGTCAAACGACTCGACTTCACAACCACGGCAGCTGACT
CGGACCAAGCCCCGTATCCGCCCCCCATCATCCTATCGAGGATCGCCGCT
CCAAACAAGGCTCAAGACACAACCTTTTCAACTGATGACACAGCCACCGC
CCCCTGCATTTACACCTCATCGCAAGCAACCGCATCACGCAGTCGAAAAG
TTCTCCTCGCCCATCATACAATGCCACCAAAGAAGTTCAGCATCCGCCGC
GCAGCCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC
GAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTG
CTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCCT
CGATCGTGTCAGACGGCTCCACGTCGAGCGTGATCGTCTTATGAAGAACG
CGCGCGCGAACGCTGCGGGCAGCAAACAACTCGCGCGGCACAGAGTAGAC
AATAAACAAACACATCAGGAAAACAATATTTATACTTTTTTATTTGCTTC
GATGTCAAACGACTCGACTTCACAACCACGGCAGCTGACTCGGACCAAGC
CCCGTATCCGCCCCCCATCATCCTATCGAGGATCGCCGCTCCAAACAAGG
CTCAAGACACAACCTTTTCAACTGATGACACAGCCACCGCCCCCTGCATT
TACACCTCATCGCAAGCAACCGCATCACGCAGTCGAAAAGTTCTCCTCGC
CCATCATACAATGCCACCAAAGAAGTTCAGCATCCGCCGCGCAGCCGGAG
CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGC
GGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGG
GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCCTCGATCGTGTC
AGACGGCTCCACGTCGAGCGTGATCGTCTT
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