mRNA_S-dermatodea_contig10987.646.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10987.646.1
Unique NamemRNA_S-dermatodea_contig10987.646.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10987.646.1 vs. uniprot
Match: D7FN14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN14_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 3.370e-43
Identity = 92/163 (56.44%), Postives = 111/163 (68.10%), Query Frame = 2 
Query:  194 APAGVKAIFSVNGHEEHRFDSSGRRDAPPPPAG-VGKQGPVEGTDKYDHRYTGRHDHGTLPALKSGGPHEELINALLGAKQDSDSFLTGLMNQELAAKSDDGHSRGAPGGHAPPKTPQNPSPEAMEL--CDGGRGGGGADRGEEEEALPPTPPVTQPAKRPKP 673
            A  GVKA F V G   H+FDSSG++D+ P  A  VG++GPVEGTDKYD RYTGRHDHGTLPALK+GGPH EL+ A+  AK DSD+FLT L+N+E +A+ D   +   PGG A    P   + EAMEL  C  GRG   + +G     LPPTPP  QPAKRP+P
Sbjct:   16 AVVGVKATFRVQGQAVHQFDSSGKKDSTPAAAAAVGEEGPVEGTDKYDCRYTGRHDHGTLPALKTGGPHGELVKAIHDAKADSDAFLTELINKEASAR-DSKRTEADPGGAALDGKPGATAGEAMELEPCGAGRGAEASPQG---VPLPPTPPEAQPAKRPRP 174
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BLAST of mRNA_S-dermatodea_contig10987.646.1 vs. uniprot
Match: A0A6H5KA65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA65_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.900e-36
Identity = 86/186 (46.24%), Postives = 114/186 (61.29%), Query Frame = 2 
Query:  152 KQRISGLHQNMSDTAPAGVKAIFSVNGHEEHRFDSSGRRDAPPPPAG------------VGKQGPVEGTDKYDHRYTGRHDHGTLPALKSGGPHEELINALLGAKQDSDSFLTGLMNQELAAKSDDGHSRGAPGGHAPPKTPQNPSPEAMELCDGGRGGGGADRGEEEEALPPTPPVTQPAKRPKP 673
            ++R++G +      A  GVKA F V G   H+FDS G++D+                  VG++GP+EGTDKY++RYTGRHDHGTLPALK+GG H EL+ A+  AK DSD+FLT L+N+E +A+ D   +   PGG      P+  + EAMEL   G GGG  +   +  ALPPTPP  Q AKRP+P
Sbjct:    5 EERVAGSN------AVVGVKATFRVQGKTVHQFDSFGKKDSTAXXXXXXXXXXXXXXXVVGEEGPMEGTDKYNYRYTGRHDHGTLPALKTGGSHGELVKAIHDAKADSDAFLTELLNKEASAR-DSNRTEAEPGGAGLGGKPRATTGEAMELEPCGAGGG-PEASPQGGALPPTPPEAQLAKRPRP 182
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BLAST of mRNA_S-dermatodea_contig10987.646.1 vs. uniprot
Match: A0A7S3PNC3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PNC3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.990e-5
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:  320 TDKYDHRYTGRHDHGTLPALKSGGPH-EELINALLGAKQDSDSFLTGLMNQE 472
            +D+Y + YTG+HDHG LP LKSG P    L++ L   K++S   L GL+ +E
Sbjct:   49 SDRYTYEYTGKHDHGKLPGLKSGDPKLNNLLHFLKLVKEESSKALAGLVQEE 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10987.646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN14_ECTSI3.370e-4356.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA65_9PHAE3.900e-3646.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3PNC3_9STRA7.990e-546.15Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10987contigS-dermatodea_contig10987:2203..5650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1468
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10987.646.1prot_S-dermatodea_contig10987.646.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10987 2384..4858 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.3602343-UTR-S-dermatodea_contig10987:2202..23831622924182.3602343-UTR-S-dermatodea_contig10987:2202..2383Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10987 2203..2383 +
1694079074.6358094-UTR-S-dermatodea_contig10987:2202..23831694079074.6358094-UTR-S-dermatodea_contig10987:2202..2383Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10987 2203..2383 +
1622924182.4018352-UTR-S-dermatodea_contig10987:4858..56501622924182.4018352-UTR-S-dermatodea_contig10987:4858..5650Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10987 4859..5650 +
1694079074.6825306-UTR-S-dermatodea_contig10987:4858..56501694079074.6825306-UTR-S-dermatodea_contig10987:4858..5650Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10987 4859..5650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.367998-CDS-S-dermatodea_contig10987:2383..25061622924182.367998-CDS-S-dermatodea_contig10987:2383..2506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 2384..2506 +
1694079074.6454344-CDS-S-dermatodea_contig10987:2383..25061694079074.6454344-CDS-S-dermatodea_contig10987:2383..2506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 2384..2506 +
1622924182.3789752-CDS-S-dermatodea_contig10987:3372..34891622924182.3789752-CDS-S-dermatodea_contig10987:3372..3489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 3373..3489 +
1694079074.6545868-CDS-S-dermatodea_contig10987:3372..34891694079074.6545868-CDS-S-dermatodea_contig10987:3372..3489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 3373..3489 +
1622924182.3869338-CDS-S-dermatodea_contig10987:4099..43061622924182.3869338-CDS-S-dermatodea_contig10987:4099..4306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 4100..4306 +
1694079074.6638825-CDS-S-dermatodea_contig10987:4099..43061694079074.6638825-CDS-S-dermatodea_contig10987:4099..4306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 4100..4306 +
1622924182.3942456-CDS-S-dermatodea_contig10987:4810..48581622924182.3942456-CDS-S-dermatodea_contig10987:4810..4858Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 4811..4858 +
1694079074.673251-CDS-S-dermatodea_contig10987:4810..48581694079074.673251-CDS-S-dermatodea_contig10987:4810..4858Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10987 4811..4858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10987.646.1

>prot_S-dermatodea_contig10987.646.1 ID=prot_S-dermatodea_contig10987.646.1|Name=mRNA_S-dermatodea_contig10987.646.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=165bp
MSDTAPAGVKAIFSVNGHEEHRFDSSGRRDAPPPPAGVGKQGPVEGTDKY
DHRYTGRHDHGTLPALKSGGPHEELINALLGAKQDSDSFLTGLMNQELAA
KSDDGHSRGAPGGHAPPKTPQNPSPEAMELCDGGRGGGGADRGEEEEALP
PTPPVTQPAKRPKP*
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mRNA from alignment at S-dermatodea_contig10987:2203..5650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10987.646.1 ID=mRNA_S-dermatodea_contig10987.646.1|Name=mRNA_S-dermatodea_contig10987.646.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3448bp|location=Sequence derived from alignment at S-dermatodea_contig10987:2203..5650+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGCTGGGCACAAGCCACAAGCACGCACTCTGCAGCTCTTTGGGGTGTT
ATTGGAACGAACTGCTAGCGGCTGTACCCGTGGCAAGGCGCTTGTGCATC
TTGCACTCTGCATCCTCCAGCCGTTACGACATAAACGGACACTCAAATAC
CAAACAGCGTATCTCAGGTTTGCATCAAAACATGTCGGACACGGCTCCTG
CTGGAGTGAAGGCCATCTTCAGCGTCAATGGACACGAGGAGCACCGCTTT
GATTCTTCGGGGCGACGAGATGCACCCCCTCCTCCAGCGGGCGTGGGGAA
GCAGGTACTGTGGGTGCAGTTTAAAATGATATAGTCGTAGGTAGCTTGAT
GGTAGGATTGGGACGAGTCGACAAATCATGCGCATTGCACATGTCGCGTG
AATTGCGGCGTAATTCGCGCACGGTCCTTCTCTGGTTTTCAGAGCTCCTG
TGTGTTCGGATAGCATACTGCTTGCTCTGCTCTGCTCTAGAGCAACTTGA
CCGCCAACCGCATCCTGGTGATGAGCAAAGAGGAGCGCAGCATGTTGTTG
ATCCATCGGCATGTAAAACCGCTGTAAATGGCTAATCGCGATTGCTGCTA
CTATGTACCTGGTACAACCTAGCTGGGTACCAGTAGACACGTGCTTGTAT
GCTTCGTTCGAATGCAACCAGCAGGGCAAGGACAATTCAGTTGACAAATC
CTCTCTCGGTACCTGGAGACGATGATACCCTTCGACCCTTGGACGCTACG
GGTAGCCCAGATGCTACCAGTTTGATTGCAGCGTTCTCTGGTGCAATTAA
CTGCAGAGCACCATTTGTTGCACTCATGGCAACGACCGAGGCAATCGAGT
GGCGAATACATCACGCAGAGTAAGTCCGGCGATCCACAGATAATAATACA
CCATGAAATAGACTGAGTTAGGGATGTGCATGGGAACTAGATTTTGTTTT
TTAATAAAAAAAATACTCCTGCCGTTGTACACGAGAGCGCTACTGCTTTG
TCTACATCTACATGCACTACACGCTGGATCACATATGAATACACAAGCAC
ATCATCAATAGCGCTTTACTACTGCTTACCCTAGCTGAGCTGTATGTATG
CAAAACACGTACCAGGACCCGCGTTTCCTGATCCCGCTACCCTACCCCCC
GTGCTCTATCTTTGATACAGGGCCCCGTCGAGGGCACAGATAAGTACGAC
CATCGCTACACCGGAAGGCACGACCACGGGACTTTACCCGCGCTCAAGTC
TGGTGGGCCACACGAGGAGCTCATCAACGCCCTGCTCGTGAGTTGTATAC
ACAATGTACATGTTTACTGCTCGTTCCTTCAAGGCGTGATTTTGGCTTGT
CTCCAGGCAGCGGGCCCATCGAAGAGTATTTGCACACACCATAACGTTAG
AGCGGCCCCGTTCTAGCTCTGCCGTTAGGGTGCAAGGAGCGTCCGATACC
GAGGATTGGAGCGGCATGATCCGAGCCAACCGGTGATATCGCCAGCCTAC
TCGTTTTTGGTCTCCCTCAGCAGCCATGCTTTCAGAACCTAACATAATAC
TTCAAGTAGCTGTTTAGTCCTGAAGTTAAGAAAGTCACTCGTAGCGTCGA
ATCTATACGCATAGTACCCGGATGCCAAGCCAAGTCTTGGACCTTTGAAG
AGCAACTCGTAGCATCACATCTATTCGCGCGTAGCCGGTTGCCAAGCCCT
GTGAACGGTGTTCTAAGAGCCACATGTAACGCGGTGCTCCAGGCTTGTCA
AACGCGCGGGAAACGCCTACAAATATTGCGGGCGACCAACGCAATGGTCG
AGCTCGTACACGTGTGTGCCCCATCGAAAGTCGAAAGTACCAAACGTTAT
AAAAAACGCCCCAAACGCCTGCTATTCTGATTTTTGCCCGGGGGTAGGGA
GCCAAGCAGGACAGCGATTCCTTCTTGACCGGACTGATGAACCAAGAACT
CGCCGCTAAATCCGACGACGGTCATAGCAGAGGAGCTCCGGGTGGACACG
CGCCTCCCAAGACCCCTCAAAATCCATCACCCGAGGCCATGGAGCTGTGC
GATGGTGGGCGCGGTGGAGGCGGGGCAGATCGGGGGGAGGAGGAAGAAGC
ACTGGTGAGTTCTTTGTGGCCTTCTCGAAGTATTCGGGGCGGTCCACGAC
AACGCATGGCGGTGGAATTTGATTGATTTGTGCAACTATCGGTTTTTACA
TCTCACTTACAACCGATTCCGAGGTATGCCCCCTCTGTAAACTTCCGAGA
GTTAGTTTGTGTCCGTTCTTTCTTTGTATGTACTATGTAGGCAAATCCGT
TGCCCCCCCCCCCCCCCCCCCCCGATCTCTCGATTTCTCATCTGACCACG
AGATAGTGGGATCGGCAACCATTGGTGGGCCGGTCGGTTGAATGTGTGAT
AATCAATCAATCAATCAATCAAGGCAATCAACCGATCCGCCCACCAATAC
TGCTCGCCGATTCCGGTATCAATACGATGCGTGCGTAGAGCTTCATACAT
AGGAGCAGCATCCCATGTTCCCGATGATCGCGCCCACCAAACATGGGCCG
CCCTCCTCTGCCCGAATCCCCTTTGGTTTTTGCTCCCTCGCCGCCTCAAA
TTTTACAGCCGCCGACACCACCAGTTACACAGCCGGCGAAGCGGCCAAAG
CCTTAAAGGCACCGGGCTGCTACTATATTGTTATAGCTCCCCACGAGTGT
AGGCCGTTCCTCCGACGAAGGTCCACGTGACACAGGAGACACGGGGCTCT
TTCTTGGCGCAACCCGCTCGCTTGTTGTTGCAGCATATGCCGTGGGGGGG
AAATACCGCTCTTACGATGCTAATTCATGGTGATTTGTGTTTCGCCCGTA
TGATACAGTACTGTAGTCACACGCGAAAGCCTTGTAGCAAGTTTAGTCTT
TTCTGAAGGGACACATTCTGGACTCACTACAAGGTGGATGGAGCCAGTTG
GTTACTCGGAGCTAAGCAAGGGTGACTCAGGGTAAGAAACGCGGATGGAT
GTTGTCGATACCGCGGGATCGACAGGCGGCCACCAAAATTCATTTTCTGG
TGTTGCCAGGAAGGGCTTGGTCCTCACACCGTAGGTCACCTACCGTATTG
CGCAGGGTATTGGTTATTATGTGGACGCCTCGTCGAGTGTTGTAACTCAG
CCAACCAAGTGTGGCTGCGTGGAGATGTATCACAAGATCGCGTAGATGTG
TCGGTGGTGTGAGGAGGGTGGAGAGGGGATGAAGGAAACATGTTGATACT
TTTCAGCTGTAATGTCAATTGTCATGTGGCCACGACCGAGATCAGCGTCC
ACTTTTGCAATTCCATCGTAAAATGGAGGGCCGGTCGGTTGCACGTGTGA
CAATTAAATCAATAAAAAAAAAACAATCAATGTGTCGTCCGGCGCACTAC
TACCGCACCATAGTTTTTTCAATATATTTATAGAATACGATACAACTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10987:2203..5650+

>mRNA_S-dermatodea_contig10987.646.1 ID=mRNA_S-dermatodea_contig10987.646.1|Name=mRNA_S-dermatodea_contig10987.646.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at S-dermatodea_contig10987:2203..5650+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGACACGGCTCCTGCTGGAGTGAAGGCCATCTTCAGCGTCAATGG
ACACGAGGAGCACCGCTTTGATTCTTCGGGGCGACGAGATGCACCCCCTC
CTCCAGCGGGCGTGGGGAAGCAGATGTCGGACACGGCTCCTGCTGGAGTG
AAGGCCATCTTCAGCGTCAATGGACACGAGGAGCACCGCTTTGATTCTTC
GGGGCGACGAGATGCACCCCCTCCTCCAGCGGGCGTGGGGAAGCAGGGCC
CCGTCGAGGGCACAGATAAGTACGACCATCGCTACACCGGAAGGCACGAC
CACGGGACTTTACCCGCGCTCAAGTCTGGTGGGCCACACGAGGAGCTCAT
CAACGCCCTGCTCGGCCCCGTCGAGGGCACAGATAAGTACGACCATCGCT
ACACCGGAAGGCACGACCACGGGACTTTACCCGCGCTCAAGTCTGGTGGG
CCACACGAGGAGCTCATCAACGCCCTGCTCGGAGCCAAGCAGGACAGCGA
TTCCTTCTTGACCGGACTGATGAACCAAGAACTCGCCGCTAAATCCGACG
ACGGTCATAGCAGAGGAGCTCCGGGTGGACACGCGCCTCCCAAGACCCCT
CAAAATCCATCACCCGAGGCCATGGAGCTGTGCGATGGTGGGCGCGGTGG
AGGCGGGGCAGATCGGGGGGAGGAGGAAGAAGCACTGGGAGCCAAGCAGG
ACAGCGATTCCTTCTTGACCGGACTGATGAACCAAGAACTCGCCGCTAAA
TCCGACGACGGTCATAGCAGAGGAGCTCCGGGTGGACACGCGCCTCCCAA
GACCCCTCAAAATCCATCACCCGAGGCCATGGAGCTGTGCGATGGTGGGC
GCGGTGGAGGCGGGGCAGATCGGGGGGAGGAGGAAGAAGCACTGCCGCCG
ACACCACCAGTTACACAGCCGGCGAAGCGGCCAAAGCCTTAACCGCCGAC
ACCACCAGTTACACAGCCGGCGAAGCGGCCAAAGCCTTAA
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