mRNA_S-dermatodea_contig10974.642.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10974.642.1
Unique NamemRNA_S-dermatodea_contig10974.642.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10974.642.1 vs. uniprot
Match: A0A6H5K156_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K156_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.290e-14
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   73 DGGLRQERNSGGGARQSIKWCPVHKSRSRGLPDGGERSGGANSEAEARKIE-RKLVSGPTFTSSARVLLVGIGADEFMGGYSRHRNAYNRG 342
            D G RQ      G ++ ++WCPVH+   R   + GER      E EA   E R   S    TS+ARVLLVGIGADEFMGGYSRHRNA+NRG
Sbjct: 1010 DAGARQ------GRQRPVRWCPVHRRFRRKGEERGER------ETEAAAGEPRPGTSATRVTSAARVLLVGIGADEFMGGYSRHRNAFNRG 1088
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BLAST of mRNA_S-dermatodea_contig10974.642.1 vs. uniprot
Match: A0A812S2X3_9DINO (ASNSD1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812S2X3_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 7.450e-6
Identity = 34/81 (41.98%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:  112 ARQSIKWCPVHKSRSRGLPDGGERSGGANSEAEARKIERKLVSGPTFT--------SSARVLLVGIGADEFMGGYSRHRNA 330
            A +   WCPVHK +S G   G E S  A  EA+        +S             +++RVLLVG GADE +GGYSRHR A
Sbjct:  842 AGEPADWCPVHKVKSSG--PGTETSAAAEKEADEEAAMTTCMSARRCAGDEAVEVRAASRVLLVGTGADELLGGYSRHRTA 920
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BLAST of mRNA_S-dermatodea_contig10974.642.1 vs. uniprot
Match: A0A1X2GBF2_9FUNG (Uncharacterized protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GBF2_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 6.120e-5
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  232 LVSGPTFTSSARVLLVGIGADEFMGGYSRHRNAYNRG 342
            L++G  + S ARVL+ G+GADE +GGYSRHR AY RG
Sbjct:  405 LLNGNEYQSEARVLISGLGADEQLGGYSRHREAYKRG 441
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BLAST of mRNA_S-dermatodea_contig10974.642.1 vs. uniprot
Match: A0A8H8JK07_9AGAM (Asparagine synthase n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JK07_9AGAM)

HSP 1 Score: 50.4 bits (119), Expect = 8.270e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:  223 ERKLVSGPTFTSSARVLLVGIGADEFMGGYSRHRNAYNRG 342
            E     G  + S ARVLL G+G+DE +GGYSRHR+AY+RG
Sbjct:  355 ESNSSGGEEYNSPARVLLSGLGSDELLGGYSRHRHAYSRG 394
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10974.642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K156_9PHAE4.290e-1452.75Glutamine amidotransferase type-2 domain-containin... [more]
A0A812S2X3_9DINO7.450e-641.98ASNSD1 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A1X2GBF2_9FUNG6.120e-562.16Uncharacterized protein n=1 Tax=Hesseltinella vesi... [more]
A0A8H8JK07_9AGAM8.270e-557.50Asparagine synthase n=1 Tax=Ceratobasidium sp. AG-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10974contigS-dermatodea_contig10974:6649..7240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.089203-CDS-S-dermatodea_contig10974:6648..69241622924182.089203-CDS-S-dermatodea_contig10974:6648..6924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10974 6649..6924 +
1694079074.4162405-CDS-S-dermatodea_contig10974:6648..69241694079074.4162405-CDS-S-dermatodea_contig10974:6648..6924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10974 6649..6924 +
1622924182.0998507-CDS-S-dermatodea_contig10974:7172..72381622924182.0998507-CDS-S-dermatodea_contig10974:7172..7238Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10974 7173..7238 +
1694079074.435133-CDS-S-dermatodea_contig10974:7172..72381694079074.435133-CDS-S-dermatodea_contig10974:7172..7238Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10974 7173..7238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10974.642.1prot_S-dermatodea_contig10974.642.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10974 6649..7238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10974.642.1

>prot_S-dermatodea_contig10974.642.1 ID=prot_S-dermatodea_contig10974.642.1|Name=mRNA_S-dermatodea_contig10974.642.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
ESTCPVRAGRDLHYRSRVPTSRKVDGGLRQERNSGGGARQSIKWCPVHKS
RSRGLPDGGERSGGANSEAEARKIERKLVSGPTFTSSARVLLVGIGADEF
MGGYSRHRNAYNRG
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mRNA from alignment at S-dermatodea_contig10974:6649..7240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10974.642.1 ID=mRNA_S-dermatodea_contig10974.642.1|Name=mRNA_S-dermatodea_contig10974.642.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=592bp|location=Sequence derived from alignment at S-dermatodea_contig10974:6649..7240+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGTCGACCTGCCCGGTGAGGGCAGGACGGGATCTGCACTATCGCTCTCG
CGTTCCGACCTCCCGCAAAGTGGACGGGGGTCTTAGACAGGAGCGTAATT
CCGGCGGTGGCGCACGCCAGTCCATAAAATGGTGCCCGGTTCACAAGAGT
CGTTCAAGAGGATTGCCAGACGGTGGCGAGCGATCAGGAGGGGCGAACTC
GGAAGCCGAGGCACGGAAAATCGAACGGAAATTGGTATCAGGGCCGACGT
TCACGTCGTCGGCGAGGGTTCTACTGGTGAGCCTACGGCTCGATTTGTTT
TGTAGGTTTTTCACATGCGTATCGTGTAGTAGCACCACGATATGGCCAAA
CTGCTTCTTAATTCGAAGCAAAACCAACCATGCGAGCTATTTGAATACTA
GCCCTGTCTTGTGCTTCCTTAATCCGCCCTAGAACCAAGTATGGTCTCTC
GGGAAAAATTAGTCGACAGCAAACCGCTGAACATTCACTGCCGGTCCTAT
CCTGCTTCCCCGTCGGACGAGCAGGTGGGCATTGGGGCCGACGAGTTCAT
GGGCGGTTATAGCCGACACAGAAACGCCTACAATAGGGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10974:6649..7240+

>mRNA_S-dermatodea_contig10974.642.1 ID=mRNA_S-dermatodea_contig10974.642.1|Name=mRNA_S-dermatodea_contig10974.642.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig10974:6649..7240+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGTCGACCTGCCCGGTGAGGGCAGGACGGGATCTGCACTATCGCTCTCG
CGTTCCGACCTCCCGCAAAGTGGACGGGGGTCTTAGACAGGAGCGTAATT
CCGGCGGTGGCGCACGCCAGTCCATAAAATGGTGCCCGGTTCACAAGAGT
CGTTCAAGAGGATTGCCAGACGGTGGCGAGCGATCAGGAGGGGCGAACTC
GGAAGCCGAGGCACGGAAAATCGAACGGAAATTGGTATCAGGGCCGACGT
TCACGTCGTCGGCGAGGGTTCTACTGGAGTCGACCTGCCCGGTGAGGGCA
GGACGGGATCTGCACTATCGCTCTCGCGTTCCGACCTCCCGCAAAGTGGA
CGGGGGTCTTAGACAGGAGCGTAATTCCGGCGGTGGCGCACGCCAGTCCA
TAAAATGGTGCCCGGTTCACAAGAGTCGTTCAAGAGGATTGCCAGACGGT
GGCGAGCGATCAGGAGGGGCGAACTCGGAAGCCGAGGCACGGAAAATCGA
ACGGAAATTGGTATCAGGGCCGACGTTCACGTCGTCGGCGAGGGTTCTAC
TGGTGGGCATTGGGGCCGACGAGTTCATGGGCGGTTATAGCCGACACAGA
AACGCCTACAATAGGGGAGTGGGCATTGGGGCCGACGAGTTCATGGGCGG
TTATAGCCGACACAGAAACGCCTACAATAGGGGA
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