mRNA_S-dermatodea_contig10974.641.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10974.641.1
Unique NamemRNA_S-dermatodea_contig10974.641.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10974.641.1 vs. uniprot
Match: D7G9H9_ECTSI (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.110e-12
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   16 KLNKNMAELCPVEGCRRLLKPGCTFGVCSRCCLKAQGFLDDAGSDSRAPTPP 171
            K+NKN  ELCPV+GCRRLL PGC  G CSRCCLKAQG ++   + + A + P
Sbjct:  599 KVNKNGDELCPVDGCRRLLLPGCVLGTCSRCCLKAQGLIEATSAPTAAASAP 650
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BLAST of mRNA_S-dermatodea_contig10974.641.1 vs. uniprot
Match: A0A6H5K156_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K156_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.070e-12
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   16 KLNKNMAELCPVEGCRRLLKPGCTFGVCSRCCLKAQGFLDDA 141
            K+NKN  ELCPV+GCRRLL PGC  G CSRCCLKAQG ++ A
Sbjct:  770 KVNKNGDELCPVDGCRRLLLPGCVLGTCSRCCLKAQGLIEAA 811
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10974.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9H9_ECTSI1.110e-1259.62Glutamine amidotransferase type-2 domain-containin... [more]
A0A6H5K156_9PHAE2.070e-1271.43Glutamine amidotransferase type-2 domain-containin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10974contigS-dermatodea_contig10974:6298..6552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog2880.D7G9H9
EggNOG free text desc.asparagine synthase (glutamine-hydrolyzing) activity
EggNOG OGsCOG0367@1,KOG0573@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size225
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.0488043-UTR-S-dermatodea_contig10974:6297..63271622924182.0488043-UTR-S-dermatodea_contig10974:6297..6327Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10974 6298..6327 +
1694079074.3858879-UTR-S-dermatodea_contig10974:6297..63271694079074.3858879-UTR-S-dermatodea_contig10974:6297..6327Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10974 6298..6327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.0593953-CDS-S-dermatodea_contig10974:6327..65521622924182.0593953-CDS-S-dermatodea_contig10974:6327..6552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10974 6328..6552 +
1694079074.3970675-CDS-S-dermatodea_contig10974:6327..65521694079074.3970675-CDS-S-dermatodea_contig10974:6327..6552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10974 6328..6552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10974.641.1prot_S-dermatodea_contig10974.641.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10974 6328..6552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10974.641.1

>prot_S-dermatodea_contig10974.641.1 ID=prot_S-dermatodea_contig10974.641.1|Name=mRNA_S-dermatodea_contig10974.641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MAELCPVEGCRRLLKPGCTFGVCSRCCLKAQGFLDDAGSDSRAPTPPTVD
AVAAAAVAAGEANEQQRLFKARAAA
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mRNA from alignment at S-dermatodea_contig10974:6298..6552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10974.641.1 ID=mRNA_S-dermatodea_contig10974.641.1|Name=mRNA_S-dermatodea_contig10974.641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at S-dermatodea_contig10974:6298..6552+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCAAAAGGCAGCGAAGTTGAACAAGAACATGGCAGAGTTGTGCCCCGT
CGAGGGGTGCCGCCGGCTGCTTAAGCCCGGTTGCACGTTCGGCGTCTGCA
GCAGGTGCTGCCTAAAAGCCCAGGGTTTTCTTGACGATGCCGGTTCCGAT
TCTCGTGCTCCCACTCCACCCACGGTGGATGCTGTGGCGGCGGCGGCGGT
GGCGGCCGGAGAAGCCAACGAACAGCAACGCCTCTTCAAGGCTCGCGCCG
CGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10974:6298..6552+

>mRNA_S-dermatodea_contig10974.641.1 ID=mRNA_S-dermatodea_contig10974.641.1|Name=mRNA_S-dermatodea_contig10974.641.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig10974:6298..6552+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGAGTTGTGCCCCGTCGAGGGGTGCCGCCGGCTGCTTAAGCCCGG
TTGCACGTTCGGCGTCTGCAGCAGGTGCTGCCTAAAAGCCCAGGGTTTTC
TTGACGATGCCGGTTCCGATTCTCGTGCTCCCACTCCACCCACGGTGGAT
GCTGTGGCGGCGGCGGCGGTGGCGGCCGGAGAAGCCAACGAACAGCAACG
CCTCTTCAAGGCTCGCGCCGCGGCGATGGCAGAGTTGTGCCCCGTCGAGG
GGTGCCGCCGGCTGCTTAAGCCCGGTTGCACGTTCGGCGTCTGCAGCAGG
TGCTGCCTAAAAGCCCAGGGTTTTCTTGACGATGCCGGTTCCGATTCTCG
TGCTCCCACTCCACCCACGGTGGATGCTGTGGCGGCGGCGGCGGTGGCGG
CCGGAGAAGCCAACGAACAGCAACGCCTCTTCAAGGCTCGCGCCGCGGCG
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