mRNA_S-dermatodea_contig10969.639.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10969.639.1
Unique NamemRNA_S-dermatodea_contig10969.639.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10969.639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10969contigS-dermatodea_contig10969:4276..4630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.9129307-CDS-S-dermatodea_contig10969:4275..46291622924181.9129307-CDS-S-dermatodea_contig10969:4275..4629Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10969 4276..4629 +
1694079074.30284-CDS-S-dermatodea_contig10969:4275..46291694079074.30284-CDS-S-dermatodea_contig10969:4275..4629Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10969 4276..4629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10969.639.1prot_S-dermatodea_contig10969.639.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10969 4276..4629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10969.639.1

>prot_S-dermatodea_contig10969.639.1 ID=prot_S-dermatodea_contig10969.639.1|Name=mRNA_S-dermatodea_contig10969.639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
HRDIDLSPHKGASRRPYRRTPSSLGAPAQASEDTHTHKHARGGKQRPAGP
TLAGNISSNEPAAGSSPNQEQHQRQQQMAMLEQHLFEDGVAMPSEDDIEF
ETAGGIAATEAAAATTTA
back to top

mRNA from alignment at S-dermatodea_contig10969:4276..4630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10969.639.1 ID=mRNA_S-dermatodea_contig10969.639.1|Name=mRNA_S-dermatodea_contig10969.639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=355bp|location=Sequence derived from alignment at S-dermatodea_contig10969:4276..4630+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACAGAGACATAGACCTGAGCCCACACAAGGGCGCGTCGCGTCGTCCATA
TAGGCGAACACCAAGCAGCCTTGGTGCACCAGCACAGGCATCAGAGGACA
CACACACACATAAGCACGCACGGGGCGGAAAGCAGCGGCCGGCCGGCCCA
ACGCTCGCCGGGAATATTTCTTCCAACGAGCCCGCGGCTGGCTCATCGCC
AAACCAGGAGCAGCATCAGAGGCAGCAGCAGATGGCAATGCTCGAGCAGC
ATCTTTTTGAGGATGGCGTTGCCATGCCCTCAGAGGATGACATCGAGTTT
GAGACGGCGGGGGGAATAGCTGCGACAGAGGCGGCGGCGGCGACAACGAC
GGCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10969:4276..4630+

>mRNA_S-dermatodea_contig10969.639.1 ID=mRNA_S-dermatodea_contig10969.639.1|Name=mRNA_S-dermatodea_contig10969.639.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig10969:4276..4630+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACAGAGACATAGACCTGAGCCCACACAAGGGCGCGTCGCGTCGTCCATA
TAGGCGAACACCAAGCAGCCTTGGTGCACCAGCACAGGCATCAGAGGACA
CACACACACATAAGCACGCACGGGGCGGAAAGCAGCGGCCGGCCGGCCCA
ACGCTCGCCGGGAATATTTCTTCCAACGAGCCCGCGGCTGGCTCATCGCC
AAACCAGGAGCAGCATCAGAGGCAGCAGCAGATGGCAATGCTCGAGCAGC
ATCTTTTTGAGGATGGCGTTGCCATGCCCTCAGAGGATGACATCGAGTTT
GAGACGGCGGGGGGAATAGCTGCGACAGAGGCGGCGGCGGCGACAACGAC
GGCGCACAGAGACATAGACCTGAGCCCACACAAGGGCGCGTCGCGTCGTC
CATATAGGCGAACACCAAGCAGCCTTGGTGCACCAGCACAGGCATCAGAG
GACACACACACACATAAGCACGCACGGGGCGGAAAGCAGCGGCCGGCCGG
CCCAACGCTCGCCGGGAATATTTCTTCCAACGAGCCCGCGGCTGGCTCAT
CGCCAAACCAGGAGCAGCATCAGAGGCAGCAGCAGATGGCAATGCTCGAG
CAGCATCTTTTTGAGGATGGCGTTGCCATGCCCTCAGAGGATGACATCGA
GTTTGAGACGGCGGGGGGAATAGCTGCGACAGAGGCGGCGGCGGCGACAA
CGACGGCG
back to top