mRNA_S-dermatodea_contig10963.635.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10963.635.1
Unique NamemRNA_S-dermatodea_contig10963.635.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10963.635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10963contigS-dermatodea_contig10963:7360..7819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size460
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10963.635.1prot_S-dermatodea_contig10963.635.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10963 7385..7744 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.7106729-UTR-S-dermatodea_contig10963:7359..73841622924181.7106729-UTR-S-dermatodea_contig10963:7359..7384Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10963 7360..7384 +
1694079074.1808662-UTR-S-dermatodea_contig10963:7359..73841694079074.1808662-UTR-S-dermatodea_contig10963:7359..7384Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10963 7360..7384 +
1622924181.7294161-UTR-S-dermatodea_contig10963:7744..78191622924181.7294161-UTR-S-dermatodea_contig10963:7744..7819Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10963 7745..7819 +
1694079074.1982555-UTR-S-dermatodea_contig10963:7744..78191694079074.1982555-UTR-S-dermatodea_contig10963:7744..7819Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10963 7745..7819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.7208483-CDS-S-dermatodea_contig10963:7384..77441622924181.7208483-CDS-S-dermatodea_contig10963:7384..7744Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10963 7385..7744 +
1694079074.1894932-CDS-S-dermatodea_contig10963:7384..77441694079074.1894932-CDS-S-dermatodea_contig10963:7384..7744Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10963 7385..7744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10963.635.1

>prot_S-dermatodea_contig10963.635.1 ID=prot_S-dermatodea_contig10963.635.1|Name=mRNA_S-dermatodea_contig10963.635.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
MLSHPQGERMQNRRGASVSFLREPRRKQKRVRQHARTHQKKDRLTTASID
DTWFSHPIRTKTSSKSDRSIDRSLALPSEKGSHVFFPFFCCCFFSLYWNI
GRRRARTYIHVPSKTIPCA*
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mRNA from alignment at S-dermatodea_contig10963:7360..7819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10963.635.1 ID=mRNA_S-dermatodea_contig10963.635.1|Name=mRNA_S-dermatodea_contig10963.635.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=460bp|location=Sequence derived from alignment at S-dermatodea_contig10963:7360..7819+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTACTGCTGTCATAAAAAACAGGACATGCTATCTCATCCTCAGGGCGAAC
GAATGCAAAACCGGCGGGGCGCTTCCGTTTCCTTTTTGAGAGAGCCAAGA
CGAAAACAAAAAAGAGTGAGACAGCACGCACGCACGCACCAAAAAAAAGA
TAGACTAACAACTGCCTCCATCGACGATACATGGTTCTCTCACCCGATCC
GGACAAAAACTTCGTCAAAAAGCGATCGATCGATCGATCGATCCCTTGCC
TTGCCTAGCGAGAAGGGATCGCATGTTTTTTTCCCGTTTTTTTGTTGTTG
CTTTTTCTCTCTTTATTGGAATATTGGAAGGCGACGAGCACGAACGTACA
TACATGTTCCTTCCAAAACCATCCCCTGTGCATGAATCTGGAAGTGGCGA
CACCAGAAAATAAATAGCAGCTCATTCGAGGCTGTCATCCATAAGCTAGA
TAAGAGTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10963:7360..7819+

>mRNA_S-dermatodea_contig10963.635.1 ID=mRNA_S-dermatodea_contig10963.635.1|Name=mRNA_S-dermatodea_contig10963.635.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig10963:7360..7819+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTATCTCATCCTCAGGGCGAACGAATGCAAAACCGGCGGGGCGCTTC
CGTTTCCTTTTTGAGAGAGCCAAGACGAAAACAAAAAAGAGTGAGACAGC
ACGCACGCACGCACCAAAAAAAAGATAGACTAACAACTGCCTCCATCGAC
GATACATGGTTCTCTCACCCGATCCGGACAAAAACTTCGTCAAAAAGCGA
TCGATCGATCGATCGATCCCTTGCCTTGCCTAGCGAGAAGGGATCGCATG
TTTTTTTCCCGTTTTTTTGTTGTTGCTTTTTCTCTCTTTATTGGAATATT
GGAAGGCGACGAGCACGAACGTACATACATGTTCCTTCCAAAACCATCCC
CTGTGCATGAATGCTATCTCATCCTCAGGGCGAACGAATGCAAAACCGGC
GGGGCGCTTCCGTTTCCTTTTTGAGAGAGCCAAGACGAAAACAAAAAAGA
GTGAGACAGCACGCACGCACGCACCAAAAAAAAGATAGACTAACAACTGC
CTCCATCGACGATACATGGTTCTCTCACCCGATCCGGACAAAAACTTCGT
CAAAAAGCGATCGATCGATCGATCGATCCCTTGCCTTGCCTAGCGAGAAG
GGATCGCATGTTTTTTTCCCGTTTTTTTGTTGTTGCTTTTTCTCTCTTTA
TTGGAATATTGGAAGGCGACGAGCACGAACGTACATACATGTTCCTTCCA
AAACCATCCCCTGTGCATGA
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