mRNA_S-dermatodea_contig10962.634.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10962.634.1
Unique NamemRNA_S-dermatodea_contig10962.634.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: D7FSG8_ECTSI (SF-assemblin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG8_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 6.500e-40
Identity = 74/81 (91.36%), Postives = 80/81 (98.77%), Query Frame = 1
Query:    1 KTSRENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINSTEI 243
            +TSRENTYA+LRR+LDENVRSRMKGDEKFQSFVREELA LK+AVS+ERQTRERDDGEIVDALNRYTSKLQSSLKIINS+EI
Sbjct:  190 RTSRENTYADLRRILDENVRSRMKGDEKFQSFVREELADLKSAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSSEI 270          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: A0A7R9UAS1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAS1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.860e-22
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 KTSRENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINSTEI 243
            +TSREN    LR   +ENVR R K DE    FV+EELAALKNAVS E   RER+D EIVDALNRYT KLQ SL+IINS +I
Sbjct:  227 RTSRENAVTALRTAFEENVRVRAKADEDLHRFVQEELAALKNAVSAEAVVREREDDEIVDALNRYTRKLQDSLQIINSPDI 307          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: A0A7S1CKK5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKK5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.110e-20
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   10 RENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINSTE 240
            RE  Y EL+  LD+ VR+R K DEKFQ FV EE+AA++NA+  E + RE++D EIV+ LNRYT KLQ+SL+IINS++
Sbjct:  204 REKVYLELKTKLDDAVRTRTKADEKFQGFVSEEIAAIRNAIRKEEELREQEDDEIVETLNRYTQKLQASLQIINSSD 280          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: A0A024U8I8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8I8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.160e-17
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   10 RENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINSTE 240
            RE    EL+  LD   ++R++GD KFQ   +EE+A ++N +  E QTRER+D EI+DALNRYT+KLQ SLK+INSTE
Sbjct:  204 REVKATELKESLDMYTKTRLRGDGKFQHLAQEEIAKIQNLLVQESQTREREDDEIIDALNRYTAKLQDSLKLINSTE 280          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: A0A2P4YHF8_9STRA (SF-assemblin n=4 Tax=Phytophthora TaxID=4783 RepID=A0A2P4YHF8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.730e-17
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   10 RENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINSTE 240
            RE  Y+EL+  LD    +R++GDE+F +F ++E+A ++NA+  E Q RER+D EIV+ALNRYT+KLQ SLK+I S +
Sbjct:  174 RELKYSELKNALDTYTATRIRGDERFHAFAQQEIAKIQNALVAEAQAREREDDEIVEALNRYTAKLQDSLKVITSPD 250          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: A0A482SDJ0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDJ0_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 3.020e-17
Identity = 36/71 (50.70%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   31 LRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINSTEI 243
            ++ +L+EN++ R K + KF +F   E+  LKN   VE++TRER+D EI++ALNRYT KLQ+SLK++NST++
Sbjct:    1 MKNILEENIKIRDKTESKFAAFFEREVNILKNDYRVEKETREREDDEIIEALNRYTIKLQNSLKVVNSTDM 71          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: W4GU67_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GU67_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.110e-17
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   10 RENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINSTE 240
            RE    EL+  LD   ++R++GD KFQ   +EE+A ++N +  E QTRER+D EI+DALNRYT+KLQ SLK+INSTE
Sbjct:  202 REVKATELKESLDMYTKTRLRGDGKFQLVAQEEIAKIQNLLVQESQTREREDDEIIDALNRYTAKLQDSLKLINSTE 278          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: A0A225V5R6_9STRA (SF-assemblin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V5R6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.050e-16
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   10 RENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKII 228
            RE  Y+EL+  LD    +R++GDEKF +F +EE+A ++NA+  E Q RER+D EIV+ALNRYT+KLQ SLK +
Sbjct:  199 RELKYSELKNALDTYTTTRIRGDEKFHAFAQEEIAKIQNALVAEAQAREREDDEIVEALNRYTAKLQDSLKTL 271          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: A0A2D4CBH6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBH6_PYTIN)

HSP 1 Score: 82.0 bits (201), Expect = 2.190e-16
Identity = 39/76 (51.32%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   10 RENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINST 237
            RE  Y++L+  LD    +R++GDEKFQ+F +E++A+++NA+  E Q RER+D EI++ALNRYT+KLQ SLK+   T
Sbjct:  361 RELKYSDLKNALDTYTSTRIRGDEKFQAFAQEQIASIQNALVAEAQAREREDDEIIEALNRYTAKLQDSLKMATET 436          
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Match: W7U5R8_9STRA (Sf n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5R8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.710e-16
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 KTSRENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQTRERDDGEIVDALNRYTSKLQSSLKIINSTEI 243
            +TSRE    E+R+ LDE VR+R K D++FQ+FV EEL ALK  ++ E   R R+D EI++AL RYT+KLQ SLKI+N+  +
Sbjct:  223 RTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNAAAL 303          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10962.634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSG8_ECTSI6.500e-4091.36SF-assemblin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7R9UAS1_9STRA4.860e-2265.43Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1CKK5_9STRA5.110e-2058.44Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A024U8I8_9STRA2.160e-1755.84Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A2P4YHF8_9STRA2.730e-1751.95SF-assemblin n=4 Tax=Phytophthora TaxID=4783 RepID... [more]
A0A482SDJ0_9ARCH3.020e-1750.70Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W4GU67_9STRA4.110e-1755.84Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A225V5R6_9STRA2.050e-1654.79SF-assemblin n=1 Tax=Phytophthora megakarya TaxID=... [more]
A0A2D4CBH6_PYTIN2.190e-1651.32Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W7U5R8_9STRA2.710e-1653.09Sf n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10962contigS-dermatodea_contig10962:6676..7406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.1e-31
Seed eggNOG ortholog2880.D7FSG8
EggNOG free text desc.SF-assemblin/beta giardin
EggNOG OGs28IGT@1,2QQTN@2759
Ec32 ortholog descriptionSF-assemblin
Ec32 orthologEc-04_000810.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.6638854-CDS-S-dermatodea_contig10962:6675..67351622924181.6638854-CDS-S-dermatodea_contig10962:6675..6735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10962 6676..6735 -
1694079074.1552188-CDS-S-dermatodea_contig10962:6675..67351694079074.1552188-CDS-S-dermatodea_contig10962:6675..6735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10962 6676..6735 -
1622924181.6761148-CDS-S-dermatodea_contig10962:7220..74061622924181.6761148-CDS-S-dermatodea_contig10962:7220..7406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10962 7221..7406 -
1694079074.1693385-CDS-S-dermatodea_contig10962:7220..74061694079074.1693385-CDS-S-dermatodea_contig10962:7220..7406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10962 7221..7406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10962.634.1prot_S-dermatodea_contig10962.634.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10962 6676..7406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10962.634.1

>prot_S-dermatodea_contig10962.634.1 ID=prot_S-dermatodea_contig10962.634.1|Name=mRNA_S-dermatodea_contig10962.634.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
KTSRENTYAELRRVLDENVRSRMKGDEKFQSFVREELAALKNAVSVERQT
RERDDGEIVDALNRYTSKLQSSLKIINSTEI*
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mRNA from alignment at S-dermatodea_contig10962:6676..7406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10962.634.1 ID=mRNA_S-dermatodea_contig10962.634.1|Name=mRNA_S-dermatodea_contig10962.634.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=731bp|location=Sequence derived from alignment at S-dermatodea_contig10962:6676..7406- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGACCTCAAGAGAAAACACGTACGCCGAATTGCGACGAGTGCTCGACGA AAACGTCCGGTCACGTATGAAGGGGGACGAGAAATTTCAGTCGTTCGTGC GAGAAGAGCTTGCGGCGCTGAAAAACGCCGTGTCGGTCGAGCGACAGACG CGCGAGAGAGACGACGGGGAGATCGTTGATGCCTTGGTGAGCGGCCGGTA TCCATACAATACTCGTTTTGTTTCGTCTTGTCTTGTCTTTTGTTTTGCCC TGTTTTTTTTTTCGCGTTTGCCGCTTGGGGTGTGGACAACAGATAAAGTG AAGGTAGCCTGACGAAGGGAATCCTTGGGGTAGCGGTTTTCATTAGTCTC AGTGGTCTGTGTCCGATCGTCTGAACTCTGCTGGGAGCGTCCATCGGTTC TTCTGCTGTGTACACGGGAGGAGTGCGACGCTATGCCTTGAACTTTACGG TATGTAAGGAGCAAGGAGCCGACACATTTGAGGGTATGACACGGAATGCA ATAATTTTTTCACGATTTTTAAAATCTGTCACGCGTGTCTACCCCATGGA TCGTCCCCAGTCGTCTCGTGCTGCTACTAATACGTGTAGTCGTTAAAAGC AAGCGGCCGATTCTGGTGCATAATGTTGCTTCTCCCGCACGCTCCGCCGT CCCGAATATGTTCCTTTTCAGAACCGTTACACTTCCAAGCTGCAGAGTAG CCTCAAGATCATCAACAGCACGGAGATCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10962:6676..7406-

>mRNA_S-dermatodea_contig10962.634.1 ID=mRNA_S-dermatodea_contig10962.634.1|Name=mRNA_S-dermatodea_contig10962.634.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig10962:6676..7406- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGACCTCAAGAGAAAACACGTACGCCGAATTGCGACGAGTGCTCGACGA
AAACGTCCGGTCACGTATGAAGGGGGACGAGAAATTTCAGTCGTTCGTGC
GAGAAGAGCTTGCGGCGCTGAAAAACGCCGTGTCGGTCGAGCGACAGACG
CGCGAGAGAGACGACGGGGAGATCGTTGATGCCTTGAAGACCTCAAGAGA
AAACACGTACGCCGAATTGCGACGAGTGCTCGACGAAAACGTCCGGTCAC
GTATGAAGGGGGACGAGAAATTTCAGTCGTTCGTGCGAGAAGAGCTTGCG
GCGCTGAAAAACGCCGTGTCGGTCGAGCGACAGACGCGCGAGAGAGACGA
CGGGGAGATCGTTGATGCCTTGAACCGTTACACTTCCAAGCTGCAGAGTA
GCCTCAAGATCATCAACAGCACGGAGATCTGAAACCGTTACACTTCCAAG
CTGCAGAGTAGCCTCAAGATCATCAACAGCACGGAGATCTGA
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