mRNA_S-dermatodea_contig10960.632.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10960.632.1
Unique NamemRNA_S-dermatodea_contig10960.632.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10960.632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10960contigS-dermatodea_contig10960:3..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size445
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.497967-CDS-S-dermatodea_contig10960:2..3291622924181.497967-CDS-S-dermatodea_contig10960:2..329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10960 3..329 +
1694079074.0106378-CDS-S-dermatodea_contig10960:2..3291694079074.0106378-CDS-S-dermatodea_contig10960:2..329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10960 3..329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.5098855-UTR-S-dermatodea_contig10960:329..4461622924181.5098855-UTR-S-dermatodea_contig10960:329..446Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10960 330..446 +
1694079074.0224078-UTR-S-dermatodea_contig10960:329..4461694079074.0224078-UTR-S-dermatodea_contig10960:329..446Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10960 330..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10960.632.1prot_S-dermatodea_contig10960.632.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10960 3..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10960.632.1

>prot_S-dermatodea_contig10960.632.1 ID=prot_S-dermatodea_contig10960.632.1|Name=mRNA_S-dermatodea_contig10960.632.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
SASSRLVFSPKARKLCTRQGAVVRVHITFYTSTQHRLPASSTVPGSTSAY
TITRTQHEKRKASRPPRSHCRPHGPSYSNINREKTVVWSDESRTNSGHHF
PASTLFRR*
back to top

mRNA from alignment at S-dermatodea_contig10960:3..446+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10960.632.1 ID=mRNA_S-dermatodea_contig10960.632.1|Name=mRNA_S-dermatodea_contig10960.632.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig10960:3..446+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGCGTCATCACGTCTTGTTTTCTCGCCTAAAGCGCGTAAATTATGTAC
CCGCCAAGGTGCCGTCGTACGAGTGCACATCACGTTTTACACCTCCACGC
AACACCGTCTGCCTGCCTCCAGCACAGTTCCGGGCTCGACATCAGCGTAC
ACCATCACACGAACCCAACATGAAAAGAGAAAGGCCAGCCGTCCTCCCCG
CAGCCACTGCCGTCCCCATGGCCCCTCCTACTCCAACATTAATAGAGAGA
AAACAGTAGTATGGTCTGACGAATCAAGAACCAACAGCGGGCATCACTTC
CCTGCCTCCACGCTGTTCCGGCGCTAAAAACCCTCGAGATCAACAACTGG
ATGATCACCGCACGGACTGCCGCTAAAAACGCTCAGACCAGCAGACCAGA
TCATCATCACACAGACCGGCTTGTTGCCTGACCGCAGAACCAAT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10960:3..446+

>mRNA_S-dermatodea_contig10960.632.1 ID=mRNA_S-dermatodea_contig10960.632.1|Name=mRNA_S-dermatodea_contig10960.632.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig10960:3..446+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGCGTCATCACGTCTTGTTTTCTCGCCTAAAGCGCGTAAATTATGTAC
CCGCCAAGGTGCCGTCGTACGAGTGCACATCACGTTTTACACCTCCACGC
AACACCGTCTGCCTGCCTCCAGCACAGTTCCGGGCTCGACATCAGCGTAC
ACCATCACACGAACCCAACATGAAAAGAGAAAGGCCAGCCGTCCTCCCCG
CAGCCACTGCCGTCCCCATGGCCCCTCCTACTCCAACATTAATAGAGAGA
AAACAGTAGTATGGTCTGACGAATCAAGAACCAACAGCGGGCATCACTTC
CCTGCCTCCACGCTGTTCCGGCGCTAATCCGCGTCATCACGTCTTGTTTT
CTCGCCTAAAGCGCGTAAATTATGTACCCGCCAAGGTGCCGTCGTACGAG
TGCACATCACGTTTTACACCTCCACGCAACACCGTCTGCCTGCCTCCAGC
ACAGTTCCGGGCTCGACATCAGCGTACACCATCACACGAACCCAACATGA
AAAGAGAAAGGCCAGCCGTCCTCCCCGCAGCCACTGCCGTCCCCATGGCC
CCTCCTACTCCAACATTAATAGAGAGAAAACAGTAGTATGGTCTGACGAA
TCAAGAACCAACAGCGGGCATCACTTCCCTGCCTCCACGCTGTTCCGGCG
CTAA
back to top