mRNA_S-dermatodea_contig10949.628.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10949.628.1
Unique NamemRNA_S-dermatodea_contig10949.628.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: D7FL93_ECTSI (Thioredoxin O n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL93_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.030e-38
Identity = 68/88 (77.27%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    1 RDKSVLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKLAES 264
            R+KSVLYFTAKWCPPCRRIGPF AELSEETP+VSFGKVDIDDN++AA+M  I SVPTFKFFKGG+EI ++SGAD   +E+ VAKLAE+
Sbjct:   51 REKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFKFFKGGQEIDSMSGADANLLEQNVAKLAEA 138
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: A0A836CF79_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF79_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.830e-22
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 RDKSVLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKL 255
            +DK+VLYFTAKWCPPCRRI P + +L+ E   V F KVDID N  AA+  GIMSVPTF F+K G  ++  +GAD + +EE V KL
Sbjct:   66 KDKAVLYFTAKWCPPCRRIAPMYQDLAAEKSDVHFYKVDIDVNKAAAKDAGIMSVPTFIFYKNGHMVSKFAGADYELLEENVDKL 150
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: A0A448YUQ9_9STRA (Thioredoxin n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUQ9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.860e-19
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    4 DKSVLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKLAES 264
            +KS+LYFTA WCPPC+ I P + ELSE+  +++FGKVDIDD  DAA    I SVPTF FF G E+    +GA+   +E A+  L E+
Sbjct:   20 EKSILYFTATWCPPCKIIKPVYEELSEKHENIAFGKVDIDDAYDAATEYQITSVPTFVFFNGNEKHEQFAGANQDKLESAIKDLDEA 106
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: A0A1E7F829_9STRA (Thioredoxin domain-containing protein n=3 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F829_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.550e-19
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    4 DKSVLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFF--KGGEEITAISGADGKAVEEAVAKL 255
            +KS+LYFTA WCPPC+ I P +  LS+E P++SFGK+DIDDN D+A    I SVPTF FF  KG ++    SGAD + +++ +  L
Sbjct:   53 EKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNGKGEKKYGQFSGADQEQLKKTLDDL 138
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: A0A7S2UE67_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UE67_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.090e-18
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    4 DKSVLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKL 255
             KSVLYFTA WCPPC+ I P + +LSE+   V+FGKVD+D N D+A    + SVPTF  F G   +   SGAD   +EE + KL
Sbjct:   49 SKSVLYFTATWCPPCKAIAPIYEKLSEDYSDVAFGKVDVDANSDSALDFEVRSVPTFVLFDGETAVHKFSGADANQLEEEIKKL 132
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: A0A7S1C0K1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0K1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.550e-18
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    4 DKSVLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKLAES 264
            +KS+LYFTA WCPPC+ I P +  +++E P V+FGKVD+DDN ++A    I  VPTF FF   + +   +GAD   +E+ +  L +S
Sbjct:   49 EKSILYFTATWCPPCKMIKPVYENMAKENPDVAFGKVDVDDNAESAAKYKISGVPTFVFFSKDDTVARFTGADQAQLEKLIGDLKDS 135
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: A0A7S2P9F2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P9F2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.780e-18
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    4 DKSVLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKL 255
            DKSV+YFTA WCPPC+ I P + E+SE+   V+FGKVD+DDN D+A    I +VPTF  F G      +SGAD   +EE +  L
Sbjct:   85 DKSVVYFTATWCPPCKVISPIYTEMSEKHAGVAFGKVDVDDNSDSAVDFEINAVPTFVLFNGENVSNRMSGADSNKLEELIEDL 168
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: A0A7S0GKG5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKG5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.200e-18
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    7 KSVLYFTAKWCPPCRRIGPFFAELSEE-TPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKL 255
            K ++YFTA WCPPC+ I P + E++E+ +P V+FGK+D+DDN DAA    + SVPTF  F G  ++   SGAD   +E  V KL
Sbjct:   53 KGIMYFTANWCPPCKMIKPKYKEMAEKFSPEVAFGKIDVDDNSDAAADYDVSSVPTFVLFDGETDVARFSGADAAKLEALVQKL 136
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: X1A998_9ZZZZ (Thioredoxin domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1A998_9ZZZZ)

HSP 1 Score: 89.4 bits (220), Expect = 3.620e-18
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    4 DKSVLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKLAES 264
            DKS+LYFTA WCPPC+ I P +  +++E P V+FGKVDIDDN +AA    I  VPTF  F   +     +GAD   +E+ V  L +S
Sbjct:   21 DKSILYFTATWCPPCKMIKPIYENMAKENPEVAFGKVDIDDNAEAAAKYEISGVPTFILFSKDDVHGRFTGADQNQLEKLVGDLKDS 107
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BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Match: A0A6U3R777_9STRA (Thioredoxin n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R777_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.610e-18
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   13 VLYFTAKWCPPCRRIGPFFAELSEETPSVSFGKVDIDDNDDAARMEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAK 252
            V+ FTA WCPPC+ I PFFAEL+E+ P   F KVD+D+ +D A   GI ++PTF+F+KGG ++  ++GA    +EE V K
Sbjct:   24 VVDFTASWCPPCKMIAPFFAELAEKYPDAIFVKVDVDEGEDLAASCGISAMPTFQFYKGGAKVDEMTGATQTKLEELVKK 103
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10949.628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL93_ECTSI1.030e-3877.27Thioredoxin O n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A836CF79_9STRA2.830e-2257.65Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A448YUQ9_9STRA1.860e-1951.72Thioredoxin n=1 Tax=Pseudo-nitzschia multistriata ... [more]
A0A1E7F829_9STRA9.550e-1951.16Thioredoxin domain-containing protein n=3 Tax=Frag... [more]
A0A7S2UE67_9STRA1.090e-1851.19Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1C0K1_9STRA1.550e-1844.83Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2P9F2_9STRA2.780e-1851.19Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0GKG5_9STRA3.200e-1848.81Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
X1A998_9ZZZZ3.620e-1848.28Thioredoxin domain-containing protein n=1 Tax=mari... [more]
A0A6U3R777_9STRA4.610e-1850.00Thioredoxin n=3 Tax=Ditylum brightwellii TaxID=492... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10949contigS-dermatodea_contig10949:4159..6440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionthioredoxin O
Ec32 orthologEc-15_004770.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size1207
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10949.628.1prot_S-dermatodea_contig10949.628.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10949 5099..6296 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.2662952-UTR-S-dermatodea_contig10949:4158..50981622924181.2662952-UTR-S-dermatodea_contig10949:4158..5098Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10949 4159..5098 -
1694079073.889514-UTR-S-dermatodea_contig10949:4158..50981694079073.889514-UTR-S-dermatodea_contig10949:4158..5098Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10949 4159..5098 -
1622924181.294555-UTR-S-dermatodea_contig10949:6296..64401622924181.294555-UTR-S-dermatodea_contig10949:6296..6440Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10949 6297..6440 -
1694079073.9159741-UTR-S-dermatodea_contig10949:6296..64401694079073.9159741-UTR-S-dermatodea_contig10949:6296..6440Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10949 6297..6440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.2781167-CDS-S-dermatodea_contig10949:5098..51791622924181.2781167-CDS-S-dermatodea_contig10949:5098..5179Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10949 5099..5179 -
1694079073.8993156-CDS-S-dermatodea_contig10949:5098..51791694079073.8993156-CDS-S-dermatodea_contig10949:5098..5179Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10949 5099..5179 -
1622924181.286097-CDS-S-dermatodea_contig10949:6254..62961622924181.286097-CDS-S-dermatodea_contig10949:6254..6296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10949 6255..6296 -
1694079073.9077687-CDS-S-dermatodea_contig10949:6254..62961694079073.9077687-CDS-S-dermatodea_contig10949:6254..6296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10949 6255..6296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10949.628.1

>prot_S-dermatodea_contig10949.628.1 ID=prot_S-dermatodea_contig10949.628.1|Name=mRNA_S-dermatodea_contig10949.628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
MEGIMSVPTFKFFKGGEEITAISGADGKAVEEAVAKLAES*
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mRNA from alignment at S-dermatodea_contig10949:4159..6440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10949.628.1 ID=mRNA_S-dermatodea_contig10949.628.1|Name=mRNA_S-dermatodea_contig10949.628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2282bp|location=Sequence derived from alignment at S-dermatodea_contig10949:4159..6440- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGACAAGAGCGTCTTGTACTTCACGGCGAAGTGGTGCCCTCCATGCCG
GCGGATAGGTCCTTTTTTTGCGGAGTTGAGCGAGGAGACGCCCTCGGTGT
CGTTCGGCAAGGTAGACATCGACGACAACGATGACGCCGCCAGGATGGAA
GGGATCATGTCCGTGCCCACCTTCAAGTTCTTCAAGGTGATAATATATTA
TATTTCTTATGTGTACAGTAGGGCCCATACATGCTGTTAGAACTATGTTC
GGCACTATAGGGGGGGGAGATACAGCCATCTACTTGTCAAAGGAGACTTG
TTCTAAGGAACAAGTCCATTCTTCCCCCCCCACTGAAGACAGTACAGATT
TATGAACACATAACTAGGCTTGGGGCTCAACCAATCTTTTTGGTAGAGGA
AAAAGATGGCCCAATCTAACTCTGTGGAAGCCTACCCTGTACATAATATA
CGATGCTATCATGTCACATTACAATCAAGAGGAAACTTTATGAATGCCCC
CCCCCCCCCCCTCTATCGTTGAACGACTCATGGTCGGTGTGGAAAGTGTA
TAGAGTGTGTTTTTTCGTTGGACGCTCGTCTTGCGCCTCTCTCTCTCTCG
AACACAGTAGTGCTGCCCAGAACAAACGTCGCATGGCCGAACTATAATAC
TACAGTTTGTTACAGGACCGGCGGAAAATGTAAGGTGCCGACGGAACACG
GCTCGGGAAAGAGTATTCCAGCAACAGCGTACAACCGACAGTGCAATCGA
GCCATGCGACGGGCAGCAATTATGTGTCGACACGTACCAATCTTGCTGCC
GTTTACTGTTGCTGTCGCGTCACGGGGCGCCACCAAAATACATACGCGGG
ACAGGACGCCGAAAAATAGCTCCGTCGCAAGACAAGACGTGCTGCGCGTG
AAGTTCCCTCTATCATAGGATTTGTTTTCTTTCGACGCACCGCATCTTAA
ATTGTGAATTGCTGCTGTCACGAGGTTGGTCTTCGGCTTCTCGGTCTAGC
CTTGTTCAACCGCTCATCCCTACCGCGTGTGTGTGATACAATTAATAGTA
CACACGCCGGGTTAGGCAGTTTGTTGAGGTCGCGTTCCCTTTCCCTATCC
CCCAAAATATAGATTTCAGAAACAGAGAGTGAGCGTTGGGGTCCCACCTT
TTCGAGAGGGAAGGTGGTCCAAGCTACACCGATGATAGGCTCACTTGCTA
TATATGATGCTATAGTATCCCCCTGACCTGCAATTGTCCTGTAATCTTGG
CGCGTTTTCAGGGGGGGGAGGAGATCACCGCCATCTCGGGCGCGGACGGA
AAGGCGGTTGAGGAAGCCGTGGCAAAGCTCGCAGAGTCGTGAATCATGAA
TCGGCCTCCAAAGCCTCCATTTGACGTCTGTGCCGTGGCACACGGCCAAG
CATCTATTGTATTGTGGGCCTGCAGTGAGTATGTAGTACCTGGTACAGGT
GTAGAGGGACGCCCGGTATTTTGAGTAGGGTTTAATCGTCTTTGTGTCGG
CTCTTAAGGGTGCCGGGCGCTCTGCGGTGCTTGTAATAGTTCTGCGTCTT
GGCTTTGCCCGGCGCTAGGGTTGACGTTTAAGGTTACGATCTGATACGCG
CGGCGAGAGGGCCCTTCCCTTTTGGTTTGCTTCGCGGAAAGTTGAGGTTA
TTTAGCTGCCCAAGCTGGGGGTGCTGCTGACTGTTGTGTGCGTGCGCGTG
CACCTGGTCTTTCGCTATTTTCGTGCCAATCATTCCCTGCCGACCATATA
CAATGTATATTACTACGTAAATTCCTTCGTTCTTTTTTTCTTCGGACACA
CTTCAATATTAGGGATCGCGCGTTTTTCGGGGGTATGACGTGCAGATTGT
CGACTACAACATATAAGTGTATGATCCATAAAATTGTGCTATTTAATATT
TAATACGAGGTACTTAGTACTGTGTGAACGTGACGAGCGCAGAAGGAAAG
AAGAGTGGCGATCTTGGGTTCGGTGTTCGTGAAGAAGCCGGTTCATCACT
ATACATTGTACAATACCTGGTATACTTTATGTTGTACTTTCTGCTCCGAT
ATCATACATTATTACAGTATGTCATGACATGTCATTGTCATAGCTATAGC
TTCCAAAGTTAGGTGTTGGTGAGAGCTCAACGCCGCCGCCAGGCCAGGGT
GACACCAATACATAATTGCCACAGGCGCGATCCACGGTTAATGACCGCAT
ATTTTGAAAAGGGAGGGGACGGGGAGAAAATATCCCCGGCTAAGGTCTGA
AAAAATTATGACAGCCTACTTGGGGTATAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10949:4159..6440-

>mRNA_S-dermatodea_contig10949.628.1 ID=mRNA_S-dermatodea_contig10949.628.1|Name=mRNA_S-dermatodea_contig10949.628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig10949:4159..6440- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGGGATCATGTCCGTGCCCACCTTCAAGTTCTTCAAGATGGAAGG
GATCATGTCCGTGCCCACCTTCAAGTTCTTCAAGGGGGGGGAGGAGATCA
CCGCCATCTCGGGCGCGGACGGAAAGGCGGTTGAGGAAGCCGTGGCAAAG
CTCGCAGAGTCGTGAGGGGGGGAGGAGATCACCGCCATCTCGGGCGCGGA
CGGAAAGGCGGTTGAGGAAGCCGTGGCAAAGCTCGCAGAGTCGTGA
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