mRNA_S-dermatodea_contig10946.625.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10946.625.1
Unique NamemRNA_S-dermatodea_contig10946.625.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10946.625.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 8.370e-35
Identity = 73/150 (48.67%), Postives = 93/150 (62.00%), Query Frame = 1 
Query:   34 ELKRLLEAEPPLPAHPTEAAAEMLAVVRLNAAGLRDWLLARAKSRAS-CDCPQPRPTWTKGDPQATSTCGDENAGCVATISMEQVLERQTQR--RGDNVGYVLARTVRSCIQYNAAQELGCRGRGNQCRRGTCMARAMDMFCGERQEGIP 474
            EL  LL  EPP     T  +  +L     N+ G+R  L  +A + A  C C  P+P W K DP   +TCG + A  +A +S++ VL+RQ +R  +GDNV YVLARTVR  +QY AAQE+G  G+GNQCRRG C ARAM MF G+  EGIP
Sbjct:   64 ELATLLADEPPRAVKQTPLSKALLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIP 213
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BLAST of mRNA_S-dermatodea_contig10946.625.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.070e-22
Identity = 64/153 (41.83%), Postives = 83/153 (54.25%), Query Frame = 1 
Query:    1 GEDAEGQEDLGELKRLLEAEPPLPAHPTEAAAEMLAVVRLNAAGLRDWLLARAKSRAS-CDCPQPRPTWTKGDPQATSTCGDENAGCVATISMEQVLERQTQR--RGDNVGYVLARTVRSCIQYNAAQELGCRGRGNQCRRGTCMARAMDMFC 450
            GE ++ +E   EL  L+  EPP  A  +  A  +L     N  G+R  L  +A++ A  C C  P   W KGD         + A  +A +S++ VL+RQ  R   GDNV YVLARTVRS +QY AAQE+G  G+GNQCRRG        MFC
Sbjct:   20 GEGSQDEELDDELATLVADEPPRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG--------MFC 164
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BLAST of mRNA_S-dermatodea_contig10946.625.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.250e-12
Identity = 49/118 (41.53%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    1 GEDAEGQEDLGELKRLLEAEPPLPAHPTEAAAEMLAVVRLNAAGLRDWLLARAKSRAS-CDCPQPRPTWTKGDPQATSTCGDENAGCVATISMEQVLERQTQRRGDNVGYVLARTVRS 351
            G+ ++  E   EL  LL  EPP  A+ T  A  +L   + N  G+R  L  +A + A  C C  P+P W K DP   +TCG + A  +A +S++   ER +Q  GDNV YVLARTVRS
Sbjct:   52 GDGSQDDEFDEELATLLADEPPRAANQTPLAKALL---QANPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQ---ERDSQ--GDNVSYVLARTVRS 161
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10946.625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE8.370e-3548.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI3.070e-2241.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U2_9PHAE6.250e-1241.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10946contigS-dermatodea_contig10946:2238..3149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size476
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.165176-CDS-S-dermatodea_contig10946:2237..25161622924181.165176-CDS-S-dermatodea_contig10946:2237..2516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10946 2238..2516 +
1694079073.8481648-CDS-S-dermatodea_contig10946:2237..25161694079073.8481648-CDS-S-dermatodea_contig10946:2237..2516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10946 2238..2516 +
1622924181.1785715-CDS-S-dermatodea_contig10946:2952..31471622924181.1785715-CDS-S-dermatodea_contig10946:2952..3147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10946 2953..3147 +
1694079073.8576992-CDS-S-dermatodea_contig10946:2952..31471694079073.8576992-CDS-S-dermatodea_contig10946:2952..3147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10946 2953..3147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10946.625.1prot_S-dermatodea_contig10946.625.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10946 2238..3147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10946.625.1

>prot_S-dermatodea_contig10946.625.1 ID=prot_S-dermatodea_contig10946.625.1|Name=mRNA_S-dermatodea_contig10946.625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
GEDAEGQEDLGELKRLLEAEPPLPAHPTEAAAEMLAVVRLNAAGLRDWLL
ARAKSRASCDCPQPRPTWTKGDPQATSTCGDENAGCVATISMEQVLERQT
QRRGDNVGYVLARTVRSCIQYNAAQELGCRGRGNQCRRGTCMARAMDMFC
GERQEGIP
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mRNA from alignment at S-dermatodea_contig10946:2238..3149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10946.625.1 ID=mRNA_S-dermatodea_contig10946.625.1|Name=mRNA_S-dermatodea_contig10946.625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig10946:2238..3149+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGAAGATGCGGAGGGGCAAGAGGACCTTGGGGAACTTAAGCGTCTGCT
CGAAGCGGAGCCTCCGCTGCCTGCGCACCCGACCGAAGCAGCGGCGGAGA
TGCTGGCCGTGGTGCGCTTGAACGCGGCAGGTTTACGGGACTGGCTCCTG
GCGCGCGCAAAGAGTCGTGCTTCCTGCGACTGCCCTCAGCCGAGGCCAAC
GTGGACCAAGGGCGACCCGCAGGCGACCTCTACGTGCGGCGACGAGAATG
CCGGCTGTGTAGCCACTATATCAATGGAGGTTAGTGGTATGCTTTTCCGT
GACGCGGTGTCTTGTCCGCGTGTCTAGCCTCGATACCATGCGCGAGTTTG
GTGTACACGGTCCAGTATATATTGTGACAAAATGATTACTGCTGTACGCA
GTAGAGCCGCCTTTTTTTCCTGCCTGTACAAGTATATAGAGTTTAGAGTT
ATTTCGAAGCGTTTGATACTAAATGGAAAAAAAATACAAATGTACATACA
ATAGGCATTTAGAGTGCCTGTATATCGTTACACAATAATAGGGATTTAGA
GTGCCGGTCTCGATTTGGGGCCCAAACTGCTTTTATATGTGCAGAGCAGC
TGGTTAGAGTACCGGCATCTCGGATGTAGGCCTTTTGTATATCGACATCA
CAACGATCTTTACAGGCTCGCCCAACTAAAACCACTATGTTCGTCTGTAT
GCCATGTCTCCGCAGCAAGTGTTGGAGCGGCAGACCCAGAGACGAGGAGA
TAATGTGGGGTACGTGCTCGCTCGGACCGTTCGGTCCTGCATACAGTACA
ACGCCGCCCAGGAGCTTGGTTGTAGGGGAAGGGGAAACCAGTGCAGGCGG
GGTACGTGCATGGCTCGGGCTATGGACATGTTTTGCGGCGAGCGCCAGGA
GGGTATACCGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10946:2238..3149+

>mRNA_S-dermatodea_contig10946.625.1 ID=mRNA_S-dermatodea_contig10946.625.1|Name=mRNA_S-dermatodea_contig10946.625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig10946:2238..3149+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGAAGATGCGGAGGGGCAAGAGGACCTTGGGGAACTTAAGCGTCTGCT
CGAAGCGGAGCCTCCGCTGCCTGCGCACCCGACCGAAGCAGCGGCGGAGA
TGCTGGCCGTGGTGCGCTTGAACGCGGCAGGTTTACGGGACTGGCTCCTG
GCGCGCGCAAAGAGTCGTGCTTCCTGCGACTGCCCTCAGCCGAGGCCAAC
GTGGACCAAGGGCGACCCGCAGGCGACCTCTACGTGCGGCGACGAGAATG
CCGGCTGTGTAGCCACTATATCAATGGAGGGCGAAGATGCGGAGGGGCAA
GAGGACCTTGGGGAACTTAAGCGTCTGCTCGAAGCGGAGCCTCCGCTGCC
TGCGCACCCGACCGAAGCAGCGGCGGAGATGCTGGCCGTGGTGCGCTTGA
ACGCGGCAGGTTTACGGGACTGGCTCCTGGCGCGCGCAAAGAGTCGTGCT
TCCTGCGACTGCCCTCAGCCGAGGCCAACGTGGACCAAGGGCGACCCGCA
GGCGACCTCTACGTGCGGCGACGAGAATGCCGGCTGTGTAGCCACTATAT
CAATGGAGCAAGTGTTGGAGCGGCAGACCCAGAGACGAGGAGATAATGTG
GGGTACGTGCTCGCTCGGACCGTTCGGTCCTGCATACAGTACAACGCCGC
CCAGGAGCTTGGTTGTAGGGGAAGGGGAAACCAGTGCAGGCGGGGTACGT
GCATGGCTCGGGCTATGGACATGTTTTGCGGCGAGCGCCAGGAGGGTATA
CCGCAAGTGTTGGAGCGGCAGACCCAGAGACGAGGAGATAATGTGGGGTA
CGTGCTCGCTCGGACCGTTCGGTCCTGCATACAGTACAACGCCGCCCAGG
AGCTTGGTTGTAGGGGAAGGGGAAACCAGTGCAGGCGGGGTACGTGCATG
GCTCGGGCTATGGACATGTTTTGCGGCGAGCGCCAGGAGGGTATACCG
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