mRNA_S-dermatodea_contig10915.617.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10915.617.1
Unique NamemRNA_S-dermatodea_contig10915.617.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: D7G0Y2_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y2_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 5.010e-39
Identity = 71/108 (65.74%), Postives = 85/108 (78.70%), Query Frame = 1
Query:    1 KAKAVAIIRESVAADDFVSPAVGVGRQDAPRFMDARIAGELVCGGSS-----SVVPWDRVNDDFCDCP-DGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            +A+AVA+IRE+ A D+F  PA GVGR+DA RF  AR AG+LVC  SS     + + WD++ND+FCDCP DGSDEPGTSAC+ G FECANRGHR +RLPSSRV DGVCD
Sbjct:   34 RARAVALIRENAAGDEFTPPASGVGRRDAARFAAARAAGKLVCTSSSGEEGSTEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCD 141          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A6H5KIQ9_9PHAE (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ9_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.030e-38
Identity = 70/108 (64.81%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 KAKAVAIIRESVAADDFVSPAVGVGRQDAPRFMDARIAGELVC-----GGSSSVVPWDRVNDDFCDCP-DGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            +A+AVA+IRE+ A D+F  PA GVGR+DA RF  AR AG+LVC      G S+ + WD++ND+FCDCP DGSDEPGTSAC+ G FECANRGH  +RLPSSRV DGVCD
Sbjct:   44 RARAVALIRENAAGDEFTPPASGVGRRDAARFTAARAAGKLVCTSSSEAGGSTEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHWSVRLPSSRVGDGVCD 151          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A1Y2B5J2_9FUNG (Glucosidase 2 subunit beta n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2B5J2_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 1.440e-22
Identity = 46/80 (57.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   67 GVGRQDAPRFMDARIAGELVCGGSSSVVPWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            GV  + APR+  +       C   S  +P+  VNDDFCDC DGSDEPGTSAC  G F CAN GH P RLPS+RV DGVCD
Sbjct:   22 GVSDKLAPRYQPSA-TNTFTCLDGSQTIPYSSVNDDFCDCVDGSDEPGTSACPFGVFFCANNGHEPARLPSNRVNDGVCD 100          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A0L0T3K5_ALLM3 (Glucosidase 2 subunit beta n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T3K5_ALLM3)

HSP 1 Score: 98.2 bits (243), Expect = 6.400e-22
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query:  106 RIAGELVCGGSSSVVPWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            R  G+  C  +S  +P+  VNDD+CDCPDGSDEPGT+AC  G F CAN GHRP+ +PSSR+ DGVC+
Sbjct:   80 RTDGQWTCLDASKAIPFAAVNDDYCDCPDGSDEPGTAACNNGRFHCANVGHRPVDIPSSRINDGVCE 146          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A1S8VWJ8_9FUNG (Glucosidase 2 subunit beta n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VWJ8_9FUNG)

HSP 1 Score: 98.2 bits (243), Expect = 6.720e-22
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   16 AIIRESVAADDFVSPAVGVGRQDAPRFMDARIAGELVCGGSSSVVPWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            A I  +VA +  + P VGV   +  R+   +      C   +  +P+D VNDD+CDC DGSDEPGTSAC  G F C N+GH    +PSSRV DGVCD
Sbjct:   20 AFITAAVATETKLGPTVGVSTANLYRYAQLKPGTLFNCFDGTRSIPFDSVNDDYCDCEDGSDEPGTSACDGGTFSCINKGHIESHIPSSRVNDGVCD 116          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A4U7KVA0_9BASI (Glucosidase 2 subunit beta n=1 Tax=Sporisorium graminicola TaxID=280036 RepID=A0A4U7KVA0_9BASI)

HSP 1 Score: 97.1 bits (240), Expect = 2.400e-21
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   31 SVAADDFVSPAVGVGRQDAPRFMDARIA-GEL--VCGGSSSVVPWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            S +A    +P  GV   DA ++   + A G L   C   S  + W  +NDD+CDCPDGSDEPGTSAC   +F CAN GH P R+ SSRV DG+CD
Sbjct:   18 SASASSSTTPLRGVAPADASKYQPTKDAQGRLRWTCLDGSKELSWSAINDDYCDCPDGSDEPGTSACHNSSFYCANHGHIPARIRSSRVDDGICD 112          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A0E9NRY5_SAICN (Glucosidase 2 subunit beta n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NRY5_SAICN)

HSP 1 Score: 96.3 bits (238), Expect = 4.360e-21
Identity = 41/64 (64.06%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  115 GELVCGGSSSVVPWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            G   C  +S  +P+ RVNDD+CDCPDGSDEPGTSAC  G F C NRGH P  L SSRV DG+CD
Sbjct:   44 GSFTCLDNSKTIPFSRVNDDYCDCPDGSDEPGTSACENGKFHCMNRGHVPGWLSSSRVGDGICD 107          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A1Y1YS33_9FUNG (Glucosidase 2 subunit beta n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YS33_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 5.670e-21
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   52 VSPAVGVGRQDAPRFMDARIAGELVCGGSSSVVPWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            V P +GV   ++ + +   + G   C   S  +P+  VNDD+CDCPDGSDEPGTSAC    F C N GH PL + SSRV DGVCD
Sbjct:   26 VDPLLGV--PESKKALYTSVEGTFRCLDGSKTIPYHSVNDDYCDCPDGSDEPGTSACPNSTFHCKNLGHMPLEISSSRVNDGVCD 108          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A316Z7Q2_9BASI (Glucosidase 2 subunit beta n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316Z7Q2_9BASI)

HSP 1 Score: 95.5 bits (236), Expect = 8.320e-21
Identity = 49/110 (44.55%), Postives = 58/110 (52.73%), Query Frame = 1
Query:    1 KAKAVAIIRESVAADDFVSPAV--------GVGRQDAPRFMDARIAGELVCGGSSSVVPWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            KA+ VA +  +VAA      A         GV  +DA  +          C  S   +PW  VNDD+CDC DGSDEPGTSAC    F C N GH P  +PSSRV DG+CD
Sbjct:   16 KAQLVAFVSCAVAAASLAGSAAASSAGRPRGVAPEDAALYAQPAHGASWRCLTSGESIPWSAVNDDYCDCADGSDEPGTSACPNSRFYCINEGHLPAFIPSSRVNDGICD 125          
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Match: A0A875RY02_EENNA (Uncharacterized protein n=1 Tax=Eeniella nana TaxID=13502 RepID=A0A875RY02_EENNA)

HSP 1 Score: 93.6 bits (231), Expect = 2.040e-20
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   67 GVGRQDAPRFMDARIAGELVCGGSSSVVPWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGVCD 306
            GV  ++ P ++  +         S+ V+ +DRVNDD+CDCPDGSDEPGTSAC+ G F CAN G +P  +PSS V DGVCD
Sbjct:   13 GVAPKNYPLYVPDKDGNFHCLNDSTIVISFDRVNDDYCDCPDGSDEPGTSACSNGKFYCANEGFKPHYIPSSWVNDGVCD 92          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10915.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y2_ECTSI5.010e-3965.74Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sili... [more]
A0A6H5KIQ9_9PHAE2.030e-3864.81Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. ... [more]
A0A1Y2B5J2_9FUNG1.440e-2257.50Glucosidase 2 subunit beta n=1 Tax=Rhizoclosmatium... [more]
A0A0L0T3K5_ALLM36.400e-2259.70Glucosidase 2 subunit beta n=1 Tax=Allomyces macro... [more]
A0A1S8VWJ8_9FUNG6.720e-2247.42Glucosidase 2 subunit beta n=1 Tax=Batrachochytriu... [more]
A0A4U7KVA0_9BASI2.400e-2149.47Glucosidase 2 subunit beta n=1 Tax=Sporisorium gra... [more]
A0A0E9NRY5_SAICN4.360e-2164.06Glucosidase 2 subunit beta n=2 Tax=Saitoella compl... [more]
A0A1Y1YS33_9FUNG5.670e-2150.59Glucosidase 2 subunit beta n=1 Tax=Basidiobolus me... [more]
A0A316Z7Q2_9BASI8.320e-2144.55Glucosidase 2 subunit beta n=1 Tax=Tilletiopsis wa... [more]
A0A875RY02_EENNA2.040e-2052.50Uncharacterized protein n=1 Tax=Eeniella nana TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10915contigS-dermatodea_contig10915:6146..6929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score98.6
Seed ortholog evalue1.8e-18
Seed eggNOG ortholog28583.AMAG_13676T0
KEGG koko:K08288
KEGG Pathwayko04141,map04141
GOsGO:0000271,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009987,GO:0012505,GO:0016051,GO:0017177,GO:0019538,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901135,GO:1901564,GO:1901576
EggNOG free text desc.glucosidase 2 subunit beta
EggNOG OGs38EUH@33154,3NY9J@4751,KOG2397@1,KOG2397@2759
COG Functional cat.T
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091
Hectar predicted targeting categoryother localisation
Exons2
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924180.4950604-CDS-S-dermatodea_contig10915:6145..63741622924180.4950604-CDS-S-dermatodea_contig10915:6145..6374Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10915 6146..6374 +
1694079073.3699043-CDS-S-dermatodea_contig10915:6145..63741694079073.3699043-CDS-S-dermatodea_contig10915:6145..6374Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10915 6146..6374 +
1622924180.5088086-CDS-S-dermatodea_contig10915:6852..69291622924180.5088086-CDS-S-dermatodea_contig10915:6852..6929Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10915 6853..6929 +
1694079073.3795986-CDS-S-dermatodea_contig10915:6852..69291694079073.3795986-CDS-S-dermatodea_contig10915:6852..6929Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10915 6853..6929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10915.617.1prot_S-dermatodea_contig10915.617.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10915 6146..6929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10915.617.1

>prot_S-dermatodea_contig10915.617.1 ID=prot_S-dermatodea_contig10915.617.1|Name=mRNA_S-dermatodea_contig10915.617.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
KAKAVAIIRESVAADDFVSPAVGVGRQDAPRFMDARIAGELVCGGSSSVV
PWDRVNDDFCDCPDGSDEPGTSACAKGAFECANRGHRPLRLPSSRVRDGV
CD
back to top

mRNA from alignment at S-dermatodea_contig10915:6146..6929+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10915.617.1 ID=mRNA_S-dermatodea_contig10915.617.1|Name=mRNA_S-dermatodea_contig10915.617.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=784bp|location=Sequence derived from alignment at S-dermatodea_contig10915:6146..6929+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCGAAAGCCGTCGCCATCATCAGGGAGAGCGTTGCGGCGGATGATTT CGTCTCGCCGGCTGTAGGAGTGGGAAGGCAGGATGCGCCCAGATTCATGG ACGCGCGAATCGCCGGAGAGCTTGTGTGCGGAGGATCTTCTTCTGTGGTA CCTTGGGACAGGGTGAACGACGACTTTTGCGATTGTCCTGATGGAAGCGA CGAGCCTGGCACCTCGGCGTGCGCCAAAGGCGAGTGCGGCCTCGGGTATC GTATCTATGTATCATGGAGGGGGCGTTTGCTCACTGTCATAGCTCTTCTT GCCTCCCTGGGTTCCTCTGCCTGGTATGATAGCCTTGCTAGCAAGTCACG TGAGAAGAGGCAGAGGTAGCAGCATGTCTGTCACCTTCGATTGCGGCGTC TGTCTCCGGTGTTGAATACTAGTGCTACTATGCTTGTTATTCTCGCCGCA TGAAGGGACTGAGAGAACATCCAATCAGCGAATCAGCCCTCAAAGCGCCG CCACCCCACAGCCCTACCTACAGCAGTGTCGAGTATCGACTAGCAGTTAC AGACTATATATGTATGGCAGATGGCAGCAATGCCGCTATGTTCCTCTCCT CCTATACGTACCCAAGGACTCGATATATAGAACATGCTCCCCGTTTCGAT TATTTCGCCTGGCAGCCGTCATCAATCAGCAAGCGCCCCGCAACCCTTGA CCCACAGGCGCCTTCGAATGCGCTAATCGCGGACACCGGCCACTGCGCTT GCCTTCATCGAGGGTGAGAGACGGCGTGTGTGAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10915:6146..6929+

>mRNA_S-dermatodea_contig10915.617.1 ID=mRNA_S-dermatodea_contig10915.617.1|Name=mRNA_S-dermatodea_contig10915.617.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig10915:6146..6929+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCGAAAGCCGTCGCCATCATCAGGGAGAGCGTTGCGGCGGATGATTT
CGTCTCGCCGGCTGTAGGAGTGGGAAGGCAGGATGCGCCCAGATTCATGG
ACGCGCGAATCGCCGGAGAGCTTGTGTGCGGAGGATCTTCTTCTGTGGTA
CCTTGGGACAGGGTGAACGACGACTTTTGCGATTGTCCTGATGGAAGCGA
CGAGCCTGGCACCTCGGCGTGCGCCAAAGAAGGCGAAAGCCGTCGCCATC
ATCAGGGAGAGCGTTGCGGCGGATGATTTCGTCTCGCCGGCTGTAGGAGT
GGGAAGGCAGGATGCGCCCAGATTCATGGACGCGCGAATCGCCGGAGAGC
TTGTGTGCGGAGGATCTTCTTCTGTGGTACCTTGGGACAGGGTGAACGAC
GACTTTTGCGATTGTCCTGATGGAAGCGACGAGCCTGGCACCTCGGCGTG
CGCCAAAGGCGCCTTCGAATGCGCTAATCGCGGACACCGGCCACTGCGCT
TGCCTTCATCGAGGGTGAGAGACGGCGTGTGTGACGCGCCTTCGAATGCG
CTAATCGCGGACACCGGCCACTGCGCTTGCCTTCATCGAGGGTGAGAGAC
GGCGTGTGTGAC
back to top