mRNA_S-dermatodea_contig10914.616.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE) HSP 1 Score: 143 bits (361), Expect = 1.530e-39 Identity = 67/166 (40.36%), Postives = 106/166 (63.86%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L+ + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D +NAFN+ R I+ A +P L+ ++ RCY + P + + DSGE R+I ++ QQGD +G LFC +P + LR +
Sbjct: 60 PPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAK 225
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE) HSP 1 Score: 145 bits (365), Expect = 3.940e-37 Identity = 67/166 (40.36%), Postives = 107/166 (64.46%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L+ ++ L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D +NAFN+ R I+ A +P L+ ++ RCY + P + + DSGE R+I ++ QQGD +G LFC +P + LR +
Sbjct: 435 PPEFWTLWKLSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAK 600
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 144 bits (363), Expect = 4.530e-37 Identity = 67/166 (40.36%), Postives = 106/166 (63.86%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L+ + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D +NAFN+ R I+ A +P L+ ++ RCY + P + + DSGE R+I ++ QQGD +G LFC +P + LR +
Sbjct: 59 PPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAK 224
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE) HSP 1 Score: 144 bits (364), Expect = 4.840e-37 Identity = 67/166 (40.36%), Postives = 107/166 (64.46%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L+ + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D +NAFN+ R I+ A ++P L+ ++ RCY + P + + DSGE R+I ++ QQGD +G LFC +P + LR +
Sbjct: 378 PPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAK 543
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 140 bits (354), Expect = 7.380e-37 Identity = 66/166 (39.76%), Postives = 104/166 (62.65%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L+ + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D +NAFN+ R I+ A +P L+ ++ RCY + P + + DSG R+I + QQGD +G LFC +P + LR +
Sbjct: 150 PPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAK 315
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.050e-36 Identity = 67/166 (40.36%), Postives = 106/166 (63.86%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L+ + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D +NAFN+ R I+ A +P L+ ++ RCY + P + + DSGE R+I ++ QQGD +G LFC +P + LR +
Sbjct: 449 PPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAK 614
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.110e-36 Identity = 67/166 (40.36%), Postives = 106/166 (63.86%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L+ + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D +NAFN+ R I+ A +P L+ ++ RCY + P + + DSGE R+I ++ QQGD +G LFC +P + LR +
Sbjct: 428 PPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAK 593
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.630e-36 Identity = 66/165 (40.00%), Postives = 106/165 (64.24%), Query Frame = 1
Query: 1 LPPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLR 495
+PPE+W L+ + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D ++AFN+ R I+ A +P +L ++ RCY + P + + DSGE R+I ++ QQGD +G LFC +P + LR
Sbjct: 51 VPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLR 215
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 142 bits (358), Expect = 3.240e-36 Identity = 66/166 (39.76%), Postives = 105/166 (63.25%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T W++ D +NAFN+ R I+ + +P L+ ++ RCY + P + + DSGE R+I ++ QQGD +G LFC +P + LR +
Sbjct: 427 PPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAK 592
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Match: A0A6H5KJS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS3_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.720e-35 Identity = 66/166 (39.76%), Postives = 105/166 (63.25%), Query Frame = 1
Query: 4 PPEYWRLFMVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVALSGGMEEVALWAKLHRETNKWLISLDAANAFNSVSRAGIIRNLAVHLPALLPFVTRCYGQEPPELHFRTDSGEVRSILSRTRAQQGDPVGVVLFCVAPLPFLRNLRQR 501
PPE+W L+ + L A+G K RP+ +G T R + A+ R+++P LE++FRE QFGVA++GG+E+VA+ A+L +T +W+I D +N FN+ R I+ A +P L+ ++ RCY + P + + DSGE R+I ++ QQGD +G LFC + + LR +
Sbjct: 633 PPEFWTLWKQSSLIALGGKCRPVFIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGQWVIQTDCSNTFNTGKRTAIMAQAATSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVAIILKLRAK 798 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10914.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10914.616.1 >prot_S-dermatodea_contig10914.616.1 ID=prot_S-dermatodea_contig10914.616.1|Name=mRNA_S-dermatodea_contig10914.616.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp MVARLSAVGPKRRPIAVGGTTRWVFASAWCRKYRPHLEDVFREVSQFGVAback to top mRNA from alignment at S-dermatodea_contig10914:5082..5582+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10914.616.1 ID=mRNA_S-dermatodea_contig10914.616.1|Name=mRNA_S-dermatodea_contig10914.616.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at S-dermatodea_contig10914:5082..5582+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10914:5082..5582+ >mRNA_S-dermatodea_contig10914.616.1 ID=mRNA_S-dermatodea_contig10914.616.1|Name=mRNA_S-dermatodea_contig10914.616.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig10914:5082..5582+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |