mRNA_S-dermatodea_contig10903.606.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10903.606.1
Unique NamemRNA_S-dermatodea_contig10903.606.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: D8LE28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE28_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 6.220e-54
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 GPDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARA--KEEEAGLKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            GP+EGPDKYL+MAQLHEGREAL +++KGLELL+KQL DG      KE EA L+QR CMAYCSV EL++TDLCFEEDAE RCQDALD SI YDYGGPEPL+AVANLRLSQS+PEEA
Sbjct:  103 GPEEGPDKYLYMAQLHEGREALGHYEKGLELLRKQLADGGGAGGTKEAEAALRQRACMAYCSVAELFMTDLCFEEDAETRCQDALDGSIRYDYGGPEPLNAVANLRLSQSRPEEA 217          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: A0A2D4BGB7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGB7_PYTIN)

HSP 1 Score: 108 bits (269), Expect = 5.690e-26
Identity = 51/112 (45.54%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAGLKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            P + P K+L++AQL  G +A++Y  +G+  LQ++L  G A   +E   +K+++C AYCS+GELY+TDLC E+DAE RC++    ++ +D G PEP  A+ANLRL+Q + +EA
Sbjct:   79 PAQNPSKWLYLAQLVGGEDAVKYTTQGITYLQQEL-QGVAAESQEAQVIKKQICXAYCSLGELYMTDLCDEDDAEARCENYFQSALQFDIGTPEPTQALANLRLTQQRRDEA 189          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: A0A0P1AV38_PLAHL (Tetratricopeptide TPR1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AV38_PLAHL)

HSP 1 Score: 104 bits (259), Expect = 1.490e-24
Identity = 49/112 (43.75%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAGLKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            P + P KY +++QL  G+EA +Y  +G+  LQ++L         E   +K+++C AYCS+GELY+TDLC++E+AE RC+ + ++++ YD G PEP  A+ANLRL Q   E A
Sbjct:   75 PSQNPTKYFYLSQLVVGKEAEQYMTQGITFLQQELQRQADPNSFEAMTIKKQICDAYCSLGELYMTDLCYDEEAEGRCEKSFEEAMKYDVGLPEPTQALANLRLVQQNKEGA 186          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: W7UA25_9STRA (Tpr domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UA25_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.360e-24
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHA--------RAKEEEAG----------LKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGG-PEPLHAVANLRLSQSKPEEA 339
            PD G  K+L++ QL EG ++L++F KG ELLQ++LG            R + EE G          +  +L   +CS+ ELYLTDLCFEEDAE RCQ ALD+++  D GG PE   A ANLRLSQ + +EA
Sbjct:   84 PDMGATKWLYLGQLSEGWKSLQHFSKGAELLQEELGARRINPCLKEPDRKEGEEVGGEGMNDEAFAIINQLVSTHCSIAELYLTDLCFEEDAEARCQAALDEALRLDVGGSPEVTQACANLRLSQKRGQEA 214          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: A0A484E7S1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7S1_BRELC)

HSP 1 Score: 100 bits (250), Expect = 3.040e-23
Identity = 48/112 (42.86%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAGLKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            P + P KY ++AQL  G EA +Y  +G+  L+++L         E   +K+++C AYCS+GELY+TDLC  ++AE RC+   ++++ +D G PEP  A+ANLRL Q + EEA
Sbjct:   75 PSQNPAKYFYLAQLVTGTEAEQYTTQGIAFLEQELQQHAETHNPEVISIKKKICDAYCSLGELYMTDLCDHKEAESRCEMFFEKAMNFDIGLPEPTQALANLRLVQQRKEEA 186          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: F0W3H7_9STRA (Uncharacterized protein AlNc14C13G1540 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3H7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.070e-23
Identity = 49/112 (43.75%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAGLKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            P + P K+L+ AQL  G +A EY ++G+  L+++L    +R  EE    K+++C AYC++GELY+TDLC  EDAE++C++A   ++ +D G PEP  A+A+LRL+Q++  EA
Sbjct:   74 PADNPTKWLNAAQLVYGEKAREYTEQGIHFLKQELEAIESRV-EEVFATKKQICAAYCALGELYMTDLCDIEDAERKCEEAFKSAMQHDVGLPEPTQALASLRLTQTRTHEA 184          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: A0A024FZ81_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ81_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.070e-23
Identity = 47/112 (41.96%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAGLKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            P + P K+L+ AQ+  G +A EY ++G+  L+++L   ++   ++    K+++C AYC++GELY+TDLC  EDAE++C++A   ++ YD G PEP  A+ANLRL+Q + +EA
Sbjct:   74 PADNPTKWLNAAQMVYGEKAQEYTEQGIHFLKQELEAINSNI-DDVFTTKKQICAAYCALGELYMTDLCDSEDAERKCEEAFKSALQYDVGLPEPTQALANLRLTQQRTQEA 184          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: A0A835ZAV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 9.270e-22
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAG--------LKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            PD    K+L+MAQLHEG EAL+ + +GL LL+  L    A                L+Q+L  A C+V ELY+TDLCF  DAE  C  ALD+++ +D GGPE   A+A+LRLSQ +  +A
Sbjct:  103 PDASAGKWLYMAQLHEGEEALKLYNRGLTLLEAALAQPAAXXXXXXXXSTLTSIPELRQQLSAACCAVAELYMTDLCFAPDAEAACAAALDRALRHDAGGPEAHQAMAHLRLSQGRAADA 222          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: A0A0L0HJY3_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HJY3_SPIPD)

HSP 1 Score: 97.1 bits (240), Expect = 1.150e-21
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAGLKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            P +G  KYL++ QL EG+E+LE+++ G+E L+K L +  A  KEEEA +++RL  A CS+ E+Y+TD C E +AE  C+    ++I+YD   PE    +A++R+SQ +P++A
Sbjct:   94 PGQGYAKYLYLGQLSEGKESLEFYENGVEALEKALAEV-AGNKEEEAIIRRRLSEALCSMAEIYMTDCCDEPEAEASCETFSSKAISYDPTNPEAHQTLASVRMSQCRPDDA 204          
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Match: A0A6A3UGW2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UGW2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.710e-21
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    4 PDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAGLKQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAVANLRLSQSKPEEA 339
            P + P KY +++QL  G EA  Y  +G+  LQ++L      +      +K+++C A+CS+GELY+TDLC  E+AE RC++   +S+ +D G PEP  A+ANLRL Q   E A
Sbjct:   75 PAQNPSKYFYLSQLVTGEEAERYTMQGITQLQQELQQHVDPSTPAALTIKKQICDAFCSLGELYMTDLCDHEEAESRCENYFQESMKFDVGLPEPTQALANLRLVQQNKEAA 186          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10903.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE28_ECTSI6.220e-5477.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BGB7_PYTIN5.690e-2645.54Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0P1AV38_PLAHL1.490e-2443.75Tetratricopeptide TPR1 n=1 Tax=Plasmopara halstedi... [more]
W7UA25_9STRA2.360e-2446.56Tpr domain protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A484E7S1_BRELC3.040e-2342.86Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
F0W3H7_9STRA5.070e-2343.75Uncharacterized protein AlNc14C13G1540 n=1 Tax=Alb... [more]
A0A024FZ81_9STRA5.070e-2341.96Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A835ZAV8_9STRA9.270e-2245.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0HJY3_SPIPD1.150e-2142.86Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A6A3UGW2_9STRA1.710e-2141.96Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10903contigS-dermatodea_contig10903:6278..7102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1e-43
Seed eggNOG ortholog2880.D8LE28
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.ribosome biogenesis
EggNOG OGs28JWA@1,2QSAH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924179.8770866-CDS-S-dermatodea_contig10903:6277..63761622924179.8770866-CDS-S-dermatodea_contig10903:6277..6376Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10903 6278..6376 -
1694079072.9697754-CDS-S-dermatodea_contig10903:6277..63761694079072.9697754-CDS-S-dermatodea_contig10903:6277..6376Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10903 6278..6376 -
1622924179.8874617-CDS-S-dermatodea_contig10903:6862..71021622924179.8874617-CDS-S-dermatodea_contig10903:6862..7102Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10903 6863..7102 -
1694079072.9836943-CDS-S-dermatodea_contig10903:6862..71021694079072.9836943-CDS-S-dermatodea_contig10903:6862..7102Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10903 6863..7102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10903.606.1prot_S-dermatodea_contig10903.606.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10903 6278..7102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10903.606.1

>prot_S-dermatodea_contig10903.606.1 ID=prot_S-dermatodea_contig10903.606.1|Name=mRNA_S-dermatodea_contig10903.606.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
GPDEGPDKYLHMAQLHEGREALEYFQKGLELLQKQLGDGHARAKEEEAGL
KQRLCMAYCSVGELYLTDLCFEEDAEKRCQDALDQSIAYDYGGPEPLHAV
ANLRLSQSKPEEA
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mRNA from alignment at S-dermatodea_contig10903:6278..7102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10903.606.1 ID=mRNA_S-dermatodea_contig10903.606.1|Name=mRNA_S-dermatodea_contig10903.606.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at S-dermatodea_contig10903:6278..7102- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCCAGACGAAGGACCAGATAAATACCTTCACATGGCGCAGCTGCACGA AGGTCGCGAGGCTCTGGAATATTTCCAGAAGGGACTTGAGCTGTTGCAAA AGCAGCTTGGCGACGGCCACGCCAGGGCGAAAGAGGAAGAGGCCGGTCTG AAACAGCGACTGTGCATGGCGTACTGTAGTGTGGGGGAGCTATATCTGAC GGACCTTTGCTTCGAGGAGGACGCGGAGAAGCGATGTCAGGTACGATGCG CGTTTCACGTGTTTGTTTGCATCAAAGTCCGGTCGACAAAATTTGCACAC CCGTGACAAGACTCCATCCCCGCCCGGTTCTTCGCGAGCGACGTCCTCAC ACTCTGGTATCTTGTGTATAAGACAGGTTTGTGCTATCGTGGGCGAGCCT TTTCCCCCAAATACGGAACAGCGAATTTACACTGATACCAGCAGCCAAAA CAATATCCCAGTCACCAGGTCCCCGTGGTGAGCCCCGACGTAGTAGCTAC CATAGAGGGGGGCTTTGTTTGCGTAGGCATCGTTCTACATCTCCATTCCT CGCCATATACTGTGTACCACGTAGGCGCTAATAGTTGAGGACAGAGACCT CTGCTGGGAATCAGTGTAGTAACTTCTCGGTTCTAGAGGACGCCACGTGC GTCGGCTTCACGTGCGATTGTTAATAGCTCTCGATGAAGTAACTCATCGC GCCGATCGACTCTCTGTGTGTTTCAGGATGCTCTCGACCAAAGCATCGCG TACGACTATGGTGGGCCGGAACCGCTGCATGCTGTAGCGAATCTCCGTCT TAGCCAAAGCAAGCCTGAGGAAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10903:6278..7102-

>mRNA_S-dermatodea_contig10903.606.1 ID=mRNA_S-dermatodea_contig10903.606.1|Name=mRNA_S-dermatodea_contig10903.606.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig10903:6278..7102- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCCAGACGAAGGACCAGATAAATACCTTCACATGGCGCAGCTGCACGA
AGGTCGCGAGGCTCTGGAATATTTCCAGAAGGGACTTGAGCTGTTGCAAA
AGCAGCTTGGCGACGGCCACGCCAGGGCGAAAGAGGAAGAGGCCGGTCTG
AAACAGCGACTGTGCATGGCGTACTGTAGTGTGGGGGAGCTATATCTGAC
GGACCTTTGCTTCGAGGAGGACGCGGAGAAGCGATGTCAGGGGCCAGACG
AAGGACCAGATAAATACCTTCACATGGCGCAGCTGCACGAAGGTCGCGAG
GCTCTGGAATATTTCCAGAAGGGACTTGAGCTGTTGCAAAAGCAGCTTGG
CGACGGCCACGCCAGGGCGAAAGAGGAAGAGGCCGGTCTGAAACAGCGAC
TGTGCATGGCGTACTGTAGTGTGGGGGAGCTATATCTGACGGACCTTTGC
TTCGAGGAGGACGCGGAGAAGCGATGTCAGGATGCTCTCGACCAAAGCAT
CGCGTACGACTATGGTGGGCCGGAACCGCTGCATGCTGTAGCGAATCTCC
GTCTTAGCCAAAGCAAGCCTGAGGAAGCGGATGCTCTCGACCAAAGCATC
GCGTACGACTATGGTGGGCCGGAACCGCTGCATGCTGTAGCGAATCTCCG
TCTTAGCCAAAGCAAGCCTGAGGAAGCG
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