mRNA_S-dermatodea_contig10899.600.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 215 bits (548), Expect = 2.650e-65 Identity = 106/195 (54.36%), Postives = 139/195 (71.28%), Query Frame = 1
Query: 1 NSTCAEWLEWMPPRLQPEDILQVVKFDYMRIERNFVEIMEANSAFTRDNLYLMCLDEESVEAAKS-MGVICVPIQDLVKGKRNANIWKLRVSVVACLLEAGNNVILSDSDALWVGDPLKDLNLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATGTGMT-EFPEVLKRLVLETRDDQWSLNAALEELGI 579
+TCA+W++W+PPR P ++QVV Y+ +ERNF+ +ME NSA TRD+LYLMC+D SV +S M + C+P+ +A IW LR VV+CL+EAG +VI+SD+DALW+ DP KD NLP V +SS+VASRG +P PL L WG+TMCMGFV FRATG + EF EV+ LV + +DDQ S+N A E LGI
Sbjct: 41 KATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAF-DFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGI 234
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 183 bits (464), Expect = 1.940e-52 Identity = 97/197 (49.24%), Postives = 133/197 (67.51%), Query Frame = 1
Query: 1 NSTCAEWLEWMPPRLQPEDILQVVKFDYMRIERNFVEIMEANSAFTRDNLYLMCLDEESVEAAKS-MGVICVPIQDLVKGKRNANIWKLRVSVVACLLEAGN-NVILSDSDALWVGDPLKDL-NLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATGT-GMTEFPEVLKRLVLETRDDQWSLNAALEELGI 579
++TC +W W+PPR +P ++QVV Y+ IERNF+ +ME NS FTR N+YLMC+D+ S + MG+ CVP+ L + +IW+LRV VV+CLLE GN +VI+SD+DALW+ DP KDL + IVASRGS+P WGST+CMGF+ FRA GM F +V+ LV++ +DDQ S+N A ++LGI
Sbjct: 33 DATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDL-PTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGI 228
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 183 bits (464), Expect = 8.560e-52 Identity = 84/193 (43.52%), Postives = 133/193 (68.91%), Query Frame = 1
Query: 1 NSTCAEWLEWMPPRLQPEDILQVVKFDYMRIERNFVEIMEANSAFTRDNLYLMCLDEESVEAAKSMGVICVPIQDLVKGKRNANIWKLRVSVVACLLEAGNNVILSDSDALWVGDPLKDLNLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATGTGMTEFPEVLKRLVLETRDDQWSLNAALEELGI 579
+++CA+ + W+PP+LQP + QVV Y+ +++NF+ ME +S F+R+N+YL+CLDEESVE+ ++G+ CV + ++W LR+ V CLL+AG +V++SD+DA+W+ DP+ D + R+SSIVASRG+ P PL +WG+T+CMGFV FRA + +F EV+ E +DQ ++N AL++L +
Sbjct: 125 HASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYQFMEVVGEFTEELENDQQAVNLALQKLDV 317
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 180 bits (457), Expect = 2.440e-51 Identity = 87/193 (45.08%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 1 NSTCAEWLEWMPPRLQPEDILQVVKFDYMRIERNFVEIMEANSAFTRDNLYLMCLDEESVEAAKSMGVICVPIQDLVKGKRNANIWKLRVSVVACLLEAGNNVILSDSDALWVGDPLKDLNLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATGTGMTEFPEVLKRLVLETRDDQWSLNAALEELGI 579
+S+C++ L W+PPR P + QVV Y +E NF+ ME +S F+R+NLYL+CLDEESV +G+ CV L ++W LRV CLL AG +V++SD+DA+W+ DP D +S++VASR PFPL WG+T+CMGF FFRA G+ M F V+ +V E DDQ ++N AL++LG+
Sbjct: 67 DSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQAFMTVVGEIVNELGDDQKAVNEALDKLGV 259
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 180 bits (456), Expect = 2.070e-50 Identity = 87/193 (45.08%), Postives = 123/193 (63.73%), Query Frame = 1
Query: 1 NSTCAEWLEWMPPRLQPEDILQVVKFDYMRIERNFVEIMEANSAFTRDNLYLMCLDEESVEAAKSMGVICVPIQDLVKGKRNANIWKLRVSVVACLLEAGNNVILSDSDALWVGDPLKDLNLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATGTGMTEFPEVLKRLVLETRDDQWSLNAALEELGI 579
+S+C++ L W+PPR P + QVV Y +E NF+ ME +S F+R+NLYL+CLDEESV +G+ CV L +IW LR+ V CLL AG +V++SD+DA+W+ DP DL A +S++VASR PFPL WG+T+CMGF FFRA G+ M F V++ + E +DQ ++N AL +L +
Sbjct: 142 DSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAVNEALNKLDV 334
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 150 bits (380), Expect = 3.800e-42 Identity = 77/146 (52.74%), Postives = 104/146 (71.23%), Query Frame = 1
Query: 115 MEANSAFTRDNLYLMCLDEESVEAAKS-MGVICVPIQDLVKGKRNANIWKLRVSVVACLLEAGNNVILSDSDALWVGDPLKDLNLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATG--TGMTEFPEVLKRLVLETRDDQ 543
ME ++FTR++LYLMCLD++S+ +S MG+ C+P+ L + IW LRV VV+CL EAG++VI+SD+DALW+ DP+KD +LP V +SSIVASRG P + WG+TMCMGF+ FRAT T M +F V+ LV E+ DDQ
Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGL-NISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQ 145
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 146 bits (368), Expect = 3.520e-38 Identity = 81/163 (49.69%), Postives = 108/163 (66.26%), Query Frame = 1
Query: 67 VVKFDYMRIERNFVEIMEANSAFTRDNLYLMCLDEESVEAAKS-MGVICVPIQDLVKGKRNANIWKLRVSVVACLLEAGN-NVILSDSDALWVGDPLKDL-NLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATGT-GMTEFPEVLKRLVLETRDDQ 543
VV Y+ IERNF+ +ME NS FTR N+YLMC+D S + MG+ CVP+ L + +IW+LRV VV+CLLE G+ +VI+SD+DALW+ DP KDL + I+ASRGS+P S WGST+CMGF+ FRA GM F +V+ LV++ +DDQ
Sbjct: 5 VVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDL-PTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQ 166
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 111 bits (278), Expect = 6.450e-26 Identity = 62/150 (41.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 157 MCLDEESVEAAKSMGVICVPIQDL--VKGKRNANIWKLRVS-----VVACLLEAGNNVILSDSDALWVGDPLKDLNLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATGT--GMTEFPEVLKRLVLETRDDQWSLNAALEELGI 579
M + S AK++ + +P++ L + + W V V +EAG++V++SD+DALW+ DP+KD +LP V SSIVASRGS+P + WG+T+CMGF+ FR T + M EF V+ LVLE +DDQ ++N A +LGI
Sbjct: 13 MAIVTSSATTAKNVSLDLLPLEPLPAISPEAVCADWAAWVPPMSGPTVVMQVEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGI 162
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: A0A8J6CCA2_DIALT (Nucleotid_trans domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCA2_DIALT) HSP 1 Score: 83.2 bits (204), Expect = 8.720e-15 Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 1
Query: 58 ILQVVKFDYMRIERNFVEIMEANSAFTRDNLYLMCLDEESVEAAKSMGVICVPIQDLVK-GKRNANIWKLRVSVVACLLEAGNNVILSDSDALWVGDPLKDLNLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRATGTGMTEFPEVLKRLVLETRDD 540
++ V+ Y R+ NF+ A+ + +++C D + + +G C QD VK G+ A ++ R+ VA L+ G +V+++D DA+W+GDPL D+ + I+ SRG P L WG+++CMGF+FFR + + VL + E + D
Sbjct: 51 VVMVLNSAYTRVFENFIRAPGAHHLAAWET-HIICTDRATAVSLAKLGWRC---QDTVKTGRSAAQVYTRRIPYVAHLVHLGRDVLITDVDAIWLGDPLPDI---MATQAGIIGSRGRSPH---LDWGASLCMGFIFFRGSDPLVRAAMPVLTEPMREDQTD 202
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Match: A0A482S212_9ARCH (Nucleotid_trans domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S212_9ARCH) HSP 1 Score: 73.6 bits (179), Expect = 2.980e-11 Identity = 30/74 (40.54%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 253 IWKLRVSVVACLLEAGNNVILSDSDALWVGDPLKDLNLPAVRNSSIVASRGSYPFPLSLSWGSTMCMGFVFFRA 474
IW R+ +V+ LL+ G +V+LSD DA+W+ +P D++ SSI++SR +YP +S WG ++CMGF++ ++
Sbjct: 5 IWMKRLEIVSVLLQRGEDVLLSDLDAIWLQNPYADISSHLQAGSSIISSRATYPEEISRVWGRSLCMGFLYLKS 78 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10899.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10899.600.1 >prot_S-dermatodea_contig10899.600.1 ID=prot_S-dermatodea_contig10899.600.1|Name=mRNA_S-dermatodea_contig10899.600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=191bp MPPRLQPEDILQVVKFDYMRIERNFVEIMEANSAFTRDNLYLMCLDEESVback to top mRNA from alignment at S-dermatodea_contig10899:5750..6561+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10899.600.1 ID=mRNA_S-dermatodea_contig10899.600.1|Name=mRNA_S-dermatodea_contig10899.600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=812bp|location=Sequence derived from alignment at S-dermatodea_contig10899:5750..6561+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10899:5750..6561+ >mRNA_S-dermatodea_contig10899.600.1 ID=mRNA_S-dermatodea_contig10899.600.1|Name=mRNA_S-dermatodea_contig10899.600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at S-dermatodea_contig10899:5750..6561+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |