mRNA_S-dermatodea_contig10896.599.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10896.599.1
Unique NamemRNA_S-dermatodea_contig10896.599.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: D8LCM6_ECTSI (Methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM6_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 2.240e-58
Identity = 130/316 (41.14%), Postives = 185/316 (58.54%), Query Frame = 2 
Query:   17 AWSDAAEAYMANLEERTDDSVPHVD--MVVGRKLVVARVVSALADKESP------VVLDVAAAGGEPAISMAKEIPHATVHGTDFAPGMVEVLRKRGEAAGVSNLKASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAWDKDPNSIALKVFRVISTLNKGDGAKIDIQPLGGDAG---VKAMQDVGFTSVTASQVLIPFYYPPGFGLRDVFPFMVKSTPIDGVLTAMEQKGRVDVREEAATIFERQVLEDIERGRPPTGPGLPDANHAGGPV----EPP--FYMKAILVEGHKAG 913
            AW+ +AEAY+ N+++    +   V   M VG KL   R+V++  DK  P      VVLDVA+AGGEPAI++AK +P ATVH TDFAP M++++RKR    GVSN+ ASV DG+ L GF D SVD VTCTWGL  MP+  +AI +F RVLK  G+     W++   S+  ++  V+ TL  G    ID + LG D G   V+ M+  G   V+AS+  +P         RD++    +S+P+   ++ +E+KGR +VR+EA  IFE  + ++   GR P G    D   AGG       PP  +Y++A++V G K G
Sbjct:   59 AWNSSAEAYVGNVQDGASSASLKVSSGMNVGYKLA-TRIVTSPYDKVQPKEPGKQVVLDVASAGGEPAITIAKAMPGATVHATDFAPAMMDLIRKRAAEEGVSNVVASVADGEALTGFGDGSVDAVTCTWGLLFMPNWQRAIQEFSRVLKRDGVVAVTLWERQEGSVFQRMRNVVETLVPGFQLLIDAEALGEDGGSAVVEEMKAAGLCDVSASKFSVPVVLSADARPRDIWEHYTESSPLGQTMSTLEKKGRTNVRQEAMDIFEDAMNKEWVEGRTPLGLQKEDDAVAGGSSPAASRPPRIYYVRALVVVGRKTG 373
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A6H5JCB5_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCB5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.320e-35
Identity = 118/350 (33.71%), Postives = 174/350 (49.71%), Query Frame = 2 
Query:   17 AWSDAAEAYMANLEERTDDSVPHVD--MVVGRKLVVARVVSALADKESP------VVLDVAAAGGEPAISMAKE--------IPHATVHGTDFAPGMVEVLRKRGEAAGVSNLKASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAWDKDPNSIALKVFRVISTLNKGDGAKIDIQPLGGDAGVKAMQDV--GFTSVTASQVLIPF--------YYPPGFGL--RDVFPFMVKSTPIDGV-----------------LTAMEQKGRVDVREEAATIFERQVLEDIERGRPPTGPGLPDANHAGGPV----EPP--FYMKAILVEGHKAG 913
            AW+ +AEAY+ N+++    +   V   M VG KL   R+V++  DK  P      VVLDVA+AGGEPAI++AK         +P AT+H TDFAP M++++RKR    GVSN+ ASV DG+ L GF D +VD VTCTWGL  MP+  +AI +                     S+  ++  V+ TL  G    ID + LG D G   ++++   +TS   +  + P+        +  PG     R  F     S P  G+                 ++ +E+KGR ++R+EA  IFE  + ++   GR P G      + AGG       PP  +Y++A++V G K G
Sbjct:   58 AWNSSAEAYVRNIQDGASSASLKVSSGMNVGYKLA-TRIVTSPYDKVQPKEPEKQVVLDVASAGGEPAITIAKAREGIYRKAMPGATIHATDFAPVMIDLIRKRAVEEGVSNVVASVADGEALTGFGDETVDAVTCTWGLLFMPNWQRAIQE--------------------GSVFQRIRNVVETLVPGFQLLIDAEALGEDGGSAVVEEMKASWTSPRTTGAIKPWLTLSIGSSFRLPGSATSRRPSFRCPWSSRPTRGLGTSGSTTPNPRHSGQQTMSTLEKKGRTNIRQEAMDIFEDSMNKEWAEGRTPLGLQNEGDDLAGGSSPTASRPPRIYYVRALVVVGRKVG 386
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A8J9RMN2_9CHLO (Probable ubiquinone/menaquinone biosynthesis C-methyltransferase Ub at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RMN2_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 5.150e-22
Identity = 78/254 (30.71%), Postives = 133/254 (52.36%), Query Frame = 2 
Query:   11 ASAWSDAAEAYMANLEERTDDSVPHVDMVVGRKLVVARVVSALADKESPVVLDVAAAGGEPAISMAKEIPHATVHGTDFAPGMVEVLRKRGEAAGVSNLKASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAWDKDPNSIALKVFRVIST-LNKGDGAKIDIQPLG-GDAGVKAMQDVGFTSVTASQVLIPFYYPPGFGLRDVFPFMVKSTPIDGVLTAMEQKGRVDVREEAA 766
            A++W  +A+ Y  ++ E +   +P    ++G  +  AR       K SP +LD+A+  GEP + +AK  P   V  TD A GM+   ++R +  GV N   +V D + L+ + D + DVVTC  GL  MP+  +A+ +F RVLKPGG+A+ + W    ++  + + R + T +   D    D   LG  +  + A+Q  GF++ +  +V +P + P   G R V   ++ +  I  +L  + ++G  DV + AA
Sbjct:   16 ATSWGKSAQQYATDVHEGSGIMMP----LIGAYVDTAREEV----KGSPQILDIASGSGEPGLQLAKLFPDGRVTMTDLAEGMIIEAKRRADLHGVKNASFAVADAEDLSHYGDATFDVVTCNCGLMFMPNYERALSEFRRVLKPGGLAMLSVWGLPEHTQLISLMRDMQTAIAPEDSFFADPNVLGCREKLLHAVQHAGFSTSSCREVNVPMHVP---GER-VQNALLHNAVIAELLERLVKRGDPDVADRAA 257
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A835YPT1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.960e-20
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 2 
Query:  155 PVVLDVAAAGGEPAISMAKEIPHATVHGTDFAPGMVEVLRKR----GEAAGVSNLKASVEDG-------------------QVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAW 472
            P VLDVA+A GEPA+S+A+ +P ATVH TD++PGMVE L  R     E  G++N+   V DG                   Q L+ FED S+D +TC++G+  MP   KAI +FYRVLKP G+A+   W
Sbjct:   76 PSVLDVASAAGEPAVSIARLLPQATVHATDYSPGMVEALNTRVAVLRETEGLANVHTGVADGESDILTLLCAVVAACICRAQNLSQFEDASMDAITCSFGIMFMPAWQKAIREFYRVLKPNGIAIINVW 204
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A7S0VV22_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VV22_9CRYP)

HSP 1 Score: 90.9 bits (224), Expect = 2.440e-17
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 2 
Query:  107 KLVVARVVSALADKESPVVLDVAAAGGEPAISMAKEIPHATVHGTDFAPGMVEVLRKRGEAAGVSNLKASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAWDKDPNSIALKVFRVIST 523
            K+++  V  A+AD  +P +LD+A+  GEPA ++A+ IP A+V  TD +P MV    K   AA + N+KA   D + ++   D S+DVVTC +G    P+  KAI++ +RVLKPGG  +   W+   N I + + R + T
Sbjct:   52 KVMLEAVQGAVADSANPTILDLASGPGEPAATIARAIPGASVIATDISPDMVATAAK--VAATLPNMKAEACDMEAISAHSDGSLDVVTCCYGFMFPPNKEKAIEEAFRVLKPGGTLVATTWN---NVIMMTMLRDLMT 185
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A7J9YQC7_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7J9YQC7_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 5.920e-14
Identity = 65/189 (34.39%), Postives = 88/189 (46.56%), Query Frame = 2 
Query:  122 RVVSALADKESPVVLDVAAAGGEPAISMAKEI-PHATVHGTDFAPGMVEVLRKRGEAAGVSNLKASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAWDK-DPNSIALKVFRVISTLNKGDGAKIDIQPLGGDAGVKAMQD----------VGFTSVTASQVLIPFYYP 652
            R+V  L  +    +L++AA  G    ++A+ +     V  TDFAPGMVEV R+RG+  G+ NL+  V D + +   +D SVD V C WG   M D   A+ +  RVL+ GG   FA W   D N  A     V+  L   D       P  G  G+ AM D           GF   T  QV + + YP
Sbjct:   38 RLVQRLDPQPGETILELAAGTGRTGFAVAERVGDEGRVISTDFAPGMVEVARRRGKELGLDNLEHRVLDAEAME-LDDASVDGVVCRWGYMLMADPAAALAETRRVLRDGGRLSFAVWGPPDKNMWAFLPGLVLVELGYMD------PPEPGAPGIFAMGDPDRIRGLVTGAGFAEPTIEQVAVEWGYP 219
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A835YK25_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK25_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.000e-13
Identity = 66/221 (29.86%), Postives = 98/221 (44.34%), Query Frame = 2 
Query:   11 ASAWSDAAEAYMANLEERTDDSVPHVDMVVGRKLVVARVVS---------ALADKES---PVVLDVAAAGGEPAISMAKEIPHATVHGTDFAPGMVEVLRKR----GEAAGVSNLKASVEDGQV---------------------------------------------------LAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAW 472
            A A+  AA  Y+ + + +     P   M V    VV +VV+           AD +S   P +LD+AAA GEP++++AK +P A +  TD++ GM+E +R R     ++ G++N+   V DG+                                                    L+ FED S+D+VTCT GL  MP+  KAI + YRVLKP G+ L   W
Sbjct:   15 AEAFGSAASTYLGDSKWKA----PMTPMYVRAAEVVTKVVAEQHSTSCDGTSADDKSQWTPTILDIAAASGEPSVTLAKIMPRAKIIATDYSAGMIEAMRARIAKLRDSDGIANVHVDVADGESXXXXXXXXXXXXXXXXXXXXXXXAADAGRPFDXXXXFVAHTQPDSMPQQANLSQFEDNSMDIVTCTLGLMFMPNWQKAIAEAYRVLKPNGLYLATVW 231
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A0K2L9M4_9LACO (Demethylmenaquinone methyltransferase n=2 Tax=Companilactobacillus TaxID=2767879 RepID=A0A0K2L9M4_9LACO)

HSP 1 Score: 77.8 bits (190), Expect = 1.880e-12
Identity = 53/177 (29.94%), Postives = 88/177 (49.72%), Query Frame = 2 
Query:  161 VLDVAAAGGEPAISMAKEIPHATVHGTDFAPGMVEVLRKRGEAAGVSNLKASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFA------------AWDKDPNSIALKVFRVIST-------LNKGDGAKIDIQPLGGDAGVKAMQDVGFTSVTASQVL 634
            +LD+     +  I++AK  PHA V G DF+  M+++ +++  AA V+N+   + D   LA ++D S +VVT  +GL ++PD  KA+ + YRVLKPGG  +               W    N I   + +V +        L+      + I+ L      + MQDVGF ++T   ++
Sbjct:   53 ILDLCCGTADWTITLAKRYPHAKVIGMDFSQEMLKIAQQKVSAAEVTNVNLEIGDAMKLA-YQDNSFEVVTIGFGLRNVPDADKALQEIYRVLKPGGQLICLEAFKVETPVIKIGWQMYFNHIMPLMGKVFAKSQPEYQYLDDSVNKFVSIKRL-----AEMMQDVGFKNITVDDLM 223
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A7S3LDF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDF4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.630e-12
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:  185 GEPAISMAKEIPHATVHGTDFAPGMVEVLRKRGEAAGVSNLKASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAWDK 478
            GEPA ++A++ P ATV  TD +P  V + ++    A + ++   V D   L+ FED S D+VTC +G    PD  KAI + +RVLKP G  +   W+K
Sbjct:    3 GEPAETIARQFPQATVVATDISPDQVALAQQT--TATLPHMTVQVADMMDLSDFEDESFDIVTCCYGFMFPPDIPKAIREAHRVLKPHGQLIATTWNK 98
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BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Match: A0A0C2HE43_9STAP (Demethylmenaquinone methyltransferase n=5 Tax=Salinicoccus TaxID=45669 RepID=A0A0C2HE43_9STAP)

HSP 1 Score: 74.3 bits (181), Expect = 2.970e-11
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 2 
Query:  146 KESPVVLDVAAAGGEPAISMAKEIPHATVHGTDFAPGMVEVLRKRGEAAGVSNLKASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMALFAAWDKDPNSIALKVF 508
            K+   +LDV    G+  I +A+E P A V G DF+  M+EV  ++   +G SN++  ++   +   F+D S D VT  +GL ++PD G A+++FYRVLKPGG  +        N +  + F
Sbjct:   44 KDDHDILDVCCGTGDWTIQLAEEAPEAEVVGLDFSEKMLEVAAEK--TSGHSNIEL-IQGNAMALPFDDGSFDYVTIGFGLRNLPDYGSAVEEFYRVLKPGGTLVILETSTPENQLISRGF 161
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10896.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCM6_ECTSI2.240e-5841.14Methyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JCB5_9PHAE1.320e-3533.71Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A8J9RMN2_9CHLO5.150e-2230.71Probable ubiquinone/menaquinone biosynthesis C-met... [more]
A0A835YPT1_9STRA4.960e-2044.96S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S0VV22_9CRYP2.440e-1738.85Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7J9YQC7_9ACTN5.920e-1434.39Methyltransferase domain-containing protein n=1 Ta... [more]
A0A835YK25_9STRA8.000e-1329.86S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A0K2L9M4_9LACO1.880e-1229.94Demethylmenaquinone methyltransferase n=2 Tax=Comp... [more]
A0A7S3LDF4_9STRA2.630e-1239.80Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A0C2HE43_9STAP2.970e-1135.54Demethylmenaquinone methyltransferase n=5 Tax=Sali... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10896contigS-dermatodea_contig10896:33..4616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.5
Seed ortholog evalue6.7e-53
Seed eggNOG ortholog2880.D8LCM6
EggNOG free text desc.ubiE/COQ5 methyltransferase family
EggNOG OGs2CZJF@1,2SANJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1850
Cds size909
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924179.1600513-UTR-S-dermatodea_contig10896:32..9661622924179.1600513-UTR-S-dermatodea_contig10896:32..966Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10896 33..966 -
1694079072.4319673-UTR-S-dermatodea_contig10896:32..9661694079072.4319673-UTR-S-dermatodea_contig10896:32..966Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10896 33..966 -
1622924179.243276-UTR-S-dermatodea_contig10896:4609..46161622924179.243276-UTR-S-dermatodea_contig10896:4609..4616Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10896 4610..4616 -
1694079072.5106275-UTR-S-dermatodea_contig10896:4609..46161694079072.5106275-UTR-S-dermatodea_contig10896:4609..4616Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10896 4610..4616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924179.1700447-CDS-S-dermatodea_contig10896:966..11731622924179.1700447-CDS-S-dermatodea_contig10896:966..1173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 967..1173 -
1694079072.4518049-CDS-S-dermatodea_contig10896:966..11731694079072.4518049-CDS-S-dermatodea_contig10896:966..1173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 967..1173 -
1622924179.180679-CDS-S-dermatodea_contig10896:1557..17361622924179.180679-CDS-S-dermatodea_contig10896:1557..1736Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 1558..1736 -
1694079072.461136-CDS-S-dermatodea_contig10896:1557..17361694079072.461136-CDS-S-dermatodea_contig10896:1557..1736Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 1558..1736 -
1622924179.1942532-CDS-S-dermatodea_contig10896:2791..29001622924179.1942532-CDS-S-dermatodea_contig10896:2791..2900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 2792..2900 -
1694079072.470566-CDS-S-dermatodea_contig10896:2791..29001694079072.470566-CDS-S-dermatodea_contig10896:2791..2900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 2792..2900 -
1622924179.2027757-CDS-S-dermatodea_contig10896:3469..36171622924179.2027757-CDS-S-dermatodea_contig10896:3469..3617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 3470..3617 -
1694079072.4788644-CDS-S-dermatodea_contig10896:3469..36171694079072.4788644-CDS-S-dermatodea_contig10896:3469..3617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 3470..3617 -
1622924179.2141438-CDS-S-dermatodea_contig10896:3786..38481622924179.2141438-CDS-S-dermatodea_contig10896:3786..3848Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 3787..3848 -
1694079072.486912-CDS-S-dermatodea_contig10896:3786..38481694079072.486912-CDS-S-dermatodea_contig10896:3786..3848Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 3787..3848 -
1622924179.2246685-CDS-S-dermatodea_contig10896:4177..42401622924179.2246685-CDS-S-dermatodea_contig10896:4177..4240Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 4178..4240 -
1694079072.494868-CDS-S-dermatodea_contig10896:4177..42401694079072.494868-CDS-S-dermatodea_contig10896:4177..4240Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 4178..4240 -
1622924179.233564-CDS-S-dermatodea_contig10896:4468..46091622924179.233564-CDS-S-dermatodea_contig10896:4468..4609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 4469..4609 -
1694079072.5027914-CDS-S-dermatodea_contig10896:4468..46091694079072.5027914-CDS-S-dermatodea_contig10896:4468..4609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10896 4469..4609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10896.599.1prot_S-dermatodea_contig10896.599.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10896 967..4609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10896.599.1

>prot_S-dermatodea_contig10896.599.1 ID=prot_S-dermatodea_contig10896.599.1|Name=mRNA_S-dermatodea_contig10896.599.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=303bp
MASAWSDAAEAYMANLEERTDDSVPHVDMVVGRKLVVARVVSALADKESP
VVLDVAAAGGEPAISMAKEIPHATVHGTDFAPGMVEVLRKRGEAAGVSNL
KASVEDGQVLAGFEDRSVDVVTCTWGLESMPDCGKAIDQFYRVLKPGGMA
LFAAWDKDPNSIALKVFRVISTLNKGDGAKIDIQPLGGDAGVKAMQDVGF
TSVTASQVLIPFYYPPGFGLRDVFPFMVKSTPIDGVLTAMEQKGRVDVRE
EAATIFERQVLEDIERGRPPTGPGLPDANHAGGPVEPPFYMKAILVEGHK
AG*
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mRNA from alignment at S-dermatodea_contig10896:33..4616-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10896.599.1 ID=mRNA_S-dermatodea_contig10896.599.1|Name=mRNA_S-dermatodea_contig10896.599.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4584bp|location=Sequence derived from alignment at S-dermatodea_contig10896:33..4616- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTCAGTATGGCGTCAGCTTGGAGCGACGCGGCTGAGGCTTACATGGCCA
ACTTGGAGGAGAGAACGGACGACAGTGTACCTCACGTGGACATGGTCGTC
GGGCGCAAGCTTGTTGTGGCTCGCGTCGTGAGCGCTTTGGCAGACAAGGT
GAGCGCAAGAACCACATATTTTACGCGAGCGTAGACGAGGGACGTTGGCG
CGCATGCCTGGACGCTTGAAATATCAGTGTGAGAGATATCAACCTAGAGA
CACCAGCCACAGGCGTGATGTAAGCGCTGCGCATGAGTATAGCCCGGTAC
TGCTGTTCACGTGTGCTCTCTTCCATATATTGTTTCCTCACCCGCGTATG
TTCTCGTGACGATGGTGTTATCTCAGGAAAGCCCTGTGGTGCTCGACGTC
GCGGCGGCGGGGGGGGAGCCCGCTATTTCGATGGCAAAGGTATGCTATTG
GGCTTTTGGCGTGCAAAACAAGGCCGGACCCCAATGGTTTTGCGGTCACA
GGTGTTCCGAGAATTTGTGCCAATTCCTTCTTAGTATCTACTTATATAGG
CAATTCCGTTTTTATTTTTTATCTCTCGATTTATCATCTGGCCACGAGAG
AGAGCGAGAGATGGGTGGGCCGGTCGGTTGTAAATGTGATACGATAGTCA
ATCGATCAAAATATTAAATTATCTATCAACCTGCAGTGCCCTGCCTTGTA
ACGTATTCGCAAAGCGGTTAATCTCGAGAGGGAAACCCCCCACGATCACT
TGACCTTCCGTGGCGCAGGAGATCCCGCACGCGACTGTGCACGGGACTGA
CTTCGCTCCAGGGATGGTTGAGGTACTCAGGTGCGAACGAGTGCACGTGC
TGTAAACGTCGAACTACGAGTCGACGGGGCCAACGCTTCCAAATCGTTTT
ATTTCGTTACATGGGTGCCCCGACCGCCTTGTGCATTGCCGAGGAGACAA
ATCATTTCTGACGTGCATGTGTGTCGCTGCACCACTCACTGGGCGCCAGG
AAGCGTGGCGAGGCTGCGGGAGTTTCGAACCTCAAGGCCAGCGTCGAGGA
CGGGCAGGTGCTGGCGGGCTTCGAGGATCGCTCTGTGGATGTGGTGACTT
GTACATGGGGGCTGGAGTCAATGCCAGACTGTGGCAAGGCCATCGACGCA
AGTATAAATTTTGGCGACGCGCACGGTTTTCTCGCTATCCGGCATTAGCA
ACTCGATCTTGACGGAAACGGTCGATGGCTACCCTTGAACAAGTTTAAGG
CCATGGAGTGCTAATTTGTTCCGCTGGTTATTCGGCGCGAGATGTGATTC
GCGCGCGACAGCACGAGTTGGCTTAGCCCTCAACCCGTTTGTGTGCATGT
GGAGTGGAGCGTTCACAATAGGGGTGCCGTTCGTCCCGCGTAGTGTATTT
TCCATGCAACGAATGGATAGGGAACGTTTCGCCGTTCACGGTTAGCGCGC
TTCGCCCTAAGAATCCCCCCATGGACGATTTTCTCGCGGCAGGCATAAAT
ACGGCATGCACGGTAGTAAATACGTATGTACGTAGAACCTTTGGAAAAAT
ACTAAATGATAAAACCATTATTATATACAATACAGTACTATGGTCTTTTT
CCAAGGCGTAGAACCACCGTGTGCGAGGAGTACCGACGCAGCTGATACTG
GAGGTGCCTGCGCGACCCGTTGCTTCGTTGCGTCGCCCCCTCAACTCTAA
TTGATCGTTTGGTCAGCAATTCTATCGTGTGCTGAAGCCTGGCGGCATGG
CCCTGTTCGCTGCTTGGGACAAGGACCCGAACTCCATCGCCCTCAAGGTG
TTCAGGGTCATCTCGACGTTGAACAGTGAGTGTGGCGTCGGGTACTCTAT
ATAAGATATTTTGTGTATTGCATCATACTCACCTCTGCCGGTCTTTTGAC
GACATAGCTTATAAGGTCATTAGCGTGTACGATAGGAAGGCTCTGCGACC
GCAGTTTCAGAGTAGAACGTTCTGCCCCGGCATTTCCCCCACTACTCCAC
ATTCAAAACTTTGTTTGAAATCGGCTGTCCGGCGTGGAGAGGTCGAATTC
CCACTCCATCGGTGACACGGTTGTTTTATTGTTTTGCACATACTGTATAC
GATATGCCAGCTTTTCCGAGGTCCGCCTGTGGCCACAAGGAATCATCCTA
TCTCTCTTGTCTATATACTACATACTACTCCGTATATTAGATCCCTCTTA
CCCCCGGTTATTACCTTAAGTCTTTTATCTCGAAATGTGTCCAACGATCC
CGCAGCTCGCCGATTTCTCGGATTAGCTTGCTCACGCTGTCGCGCTTTCC
GCGGCGGCGGTGGGGGAAATATGTTAACCCTTTTGGTGCTATTAAATTAG
TACATTAGTATTAACAATTAATAGGGCTCTCCGAAACGACGAAAAACTCT
CTCGATGCCAGTCGACGGCTACAGCCCCGTTTCCCTTGCGCTCCGTTCTC
TCTCATTCCTGCGTCATAACCCAAGGAGTTCCCCAGGGCCCCGCATCAAG
CACGCCTCAATACGTGCTAACAGGCGCTCCAAACTCTAACAGGGGGCTAG
TACCAAAAGGGTTAATATCGACTCTGCCCGGATTCGACCCCTGGTCCTCC
GTCTTTCTGGACGTTGGTGCACCAGTTGCACGGGGCGCACGACAATACAC
GATGCACACGATATGTTACAATATACCTGCCGTGCGATTTATTTGCGGCA
AAGCCCGCCTGTGTGTCAAGCATGGGATTTAGCGGCCATACCCCGCGTAA
ACTCCCATGTATTGTTTAGGGGAATACACATATCACTGTGGTTTATCGAA
ACGATAACTCTCGCTCACTGTCTGAGTCCATGCCTTTTCCCCTCCCCTAA
ATTTACGTTTCGTGTGGGTCCATACTGTAGAAGGAGACGGAGCGAAGATA
GACATACAGCCCCTGGGTGGGGACGCCGGCGTCAAAGCAATGCAAGATGT
CGGTTTCACCAGCGTCACAGCATCGCAGGTCCTGATTCCGTTTTACTACC
CGCCTGGCTTCGGCCTGCGGGACGTCTTCCCGTTCATGGTCAAATCTACG
CCGATCGATGTGAGTCTTGCACCTGACTGAAATAGGACTGGTTTGTTTCT
GGCCTCGTCAATACCTATTTCGTGATTGAACGGTGGAATCTTATGTTCCC
CTGTCGGCGGTCTCTGTGCCTATGTGCGGTGTGCAACGTGCAGTATGCAA
TTGTTTCAGTGTGTGGGTCGCGAGCGCGACGGTAGGGAATCACCCACATT
GTAATATCCTCACTCGTAACAGACTACAATAGCTTGCTTCCACGAACAGC
TGCTATTGGTAGCGTGGGTTTCTCGGCGTATCTTGGGATTGTCTTGAGTG
CATCCTTGTTCCCAGTAACATACGGCCACACGTGGACGGACTCACAACCC
AATCGATGATCCGTTCGCCTCTCGGGGCTGCTGCTCTTGACAGGGCGTTT
TGACGGCGATGGAGCAAAAAGGGCGCGTGGACGTCCGCGAAGAAGCCGCC
ACGATTTTCGAACGCCAGGTGCTCGAGGACATTGAAAGGGGACGCCCACC
GACGGGGCCTGGCCTACCGGACGCGAATCATGCCGGAGGACCCGTGGAAC
CACCCTTTTACATGAAAGCCATTCTTGTGGAAGGCCATAAAGCAGGATAA
ATTCAAGGCTACGCCGCCACTTCCTTCCATGTTTTTATTATTTGCTGAAC
GTTGCGAGCTTGGGGCTATATATCTATATCTTCGTTCGCGGGCCACATAC
ACGCACGGCCGAGGGACTGCGCGATGTCTGGCCTGTTTGTGGCATTCGTG
CTTATTTAAGCGAAGCGAAAGTGGAAGAGATCAATCGGGAAGAGCCGACG
CTCAGGATGGCTTCGAGGAGTCACGGGGGGTTGTGCTATTTTAAGTCATA
CCAGTAGTCGTTGGACATATTATAGTAGTGCAGGTAACAAGTCGACTCAC
ACTCGTCGTGGGAGGTTTTGGAGTATGATTCAAACGTTCGATGTCTTCCC
GAAGGATTTTCGCGATGGTAAGTCAAAAAGGGTAAGTAATACAGTAGCAG
TAAGGAGTGTCAAAACATCGACGATGCACCCAGGGAAAGCGTGTAAAAGG
ACTCGCTGGGTGTGTGCACAATTGCCTTGACACTACGTGCCACGGGGCAC
GCCGTGTTGTTCAAATTGAATGCTGTACGATCTCAATGTTAACAGTGTAG
CCGTCAGCCACGGGCCCAACAGGTTCGTATGATCCATTCACAGTGTATAC
TATAGTATACTGAGCATTCGTATCCCAAAGAAATAAAACCATATTTTCAT
ATATTATAGTGTACACAGAGAGCTCTACATATAGCTCTAGGCACCGATAT
ATATACTTGTAGCGTGGTAACACACAGCAGGCAACCGGACACTCTGCGTG
CTCTGGGGGGGACCGTCATTCGCTGTTCGTTGATTCGTAGCCCCGGTTAT
GAGTCGGCTCGCAAGCGGTTCAGAGATAGAGAAAATATGTCTTCGTTATC
AAAGCGTGTCGGGTTAGAGTTGGGCCATGCAGGCCCGCAATGGCACACGC
ACCATACGCAGTACACAAAAGAGTCAAAACCACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10896:33..4616-

>mRNA_S-dermatodea_contig10896.599.1 ID=mRNA_S-dermatodea_contig10896.599.1|Name=mRNA_S-dermatodea_contig10896.599.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at S-dermatodea_contig10896:33..4616- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTCAGCTTGGAGCGACGCGGCTGAGGCTTACATGGCCAACTTGGA
GGAGAGAACGGACGACAGTGTACCTCACGTGGACATGGTCGTCGGGCGCA
AGCTTGTTGTGGCTCGCGTCGTGAGCGCTTTGGCAGACAAGATGGCGTCA
GCTTGGAGCGACGCGGCTGAGGCTTACATGGCCAACTTGGAGGAGAGAAC
GGACGACAGTGTACCTCACGTGGACATGGTCGTCGGGCGCAAGCTTGTTG
TGGCTCGCGTCGTGAGCGCTTTGGCAGACAAGGAAAGCCCTGTGGTGCTC
GACGTCGCGGCGGCGGGGGGGGAGCCCGCTATTTCGATGGCAAAGGAAAG
CCCTGTGGTGCTCGACGTCGCGGCGGCGGGGGGGGAGCCCGCTATTTCGA
TGGCAAAGGAGATCCCGCACGCGACTGTGCACGGGACTGACTTCGCTCCA
GGGATGGTTGAGGTACTCAGGAGATCCCGCACGCGACTGTGCACGGGACT
GACTTCGCTCCAGGGATGGTTGAGGTACTCAGGAAGCGTGGCGAGGCTGC
GGGAGTTTCGAACCTCAAGGCCAGCGTCGAGGACGGGCAGGTGCTGGCGG
GCTTCGAGGATCGCTCTGTGGATGTGGTGACTTGTACATGGGGGCTGGAG
TCAATGCCAGACTGTGGCAAGGCCATCGACGAAGCGTGGCGAGGCTGCGG
GAGTTTCGAACCTCAAGGCCAGCGTCGAGGACGGGCAGGTGCTGGCGGGC
TTCGAGGATCGCTCTGTGGATGTGGTGACTTGTACATGGGGGCTGGAGTC
AATGCCAGACTGTGGCAAGGCCATCGACCAATTCTATCGTGTGCTGAAGC
CTGGCGGCATGGCCCTGTTCGCTGCTTGGGACAAGGACCCGAACTCCATC
GCCCTCAAGGTGTTCAGGGTCATCTCGACGTTGAACACAATTCTATCGTG
TGCTGAAGCCTGGCGGCATGGCCCTGTTCGCTGCTTGGGACAAGGACCCG
AACTCCATCGCCCTCAAGGTGTTCAGGGTCATCTCGACGTTGAACAAAGG
AGACGGAGCGAAGATAGACATACAGCCCCTGGGTGGGGACGCCGGCGTCA
AAGCAATGCAAGATGTCGGTTTCACCAGCGTCACAGCATCGCAGGTCCTG
ATTCCGTTTTACTACCCGCCTGGCTTCGGCCTGCGGGACGTCTTCCCGTT
CATGGTCAAATCTACGCCGATCGATAAGGAGACGGAGCGAAGATAGACAT
ACAGCCCCTGGGTGGGGACGCCGGCGTCAAAGCAATGCAAGATGTCGGTT
TCACCAGCGTCACAGCATCGCAGGTCCTGATTCCGTTTTACTACCCGCCT
GGCTTCGGCCTGCGGGACGTCTTCCCGTTCATGGTCAAATCTACGCCGAT
CGATGGCGTTTTGACGGCGATGGAGCAAAAAGGGCGCGTGGACGTCCGCG
AAGAAGCCGCCACGATTTTCGAACGCCAGGTGCTCGAGGACATTGAAAGG
GGACGCCCACCGACGGGGCCTGGCCTACCGGACGCGAATCATGCCGGAGG
ACCCGTGGAACCACCCTTTTACATGAAAGCCATTCTTGTGGAAGGCCATA
AAGCAGGATAAGGCGTTTTGACGGCGATGGAGCAAAAAGGGCGCGTGGAC
GTCCGCGAAGAAGCCGCCACGATTTTCGAACGCCAGGTGCTCGAGGACAT
TGAAAGGGGACGCCCACCGACGGGGCCTGGCCTACCGGACGCGAATCATG
CCGGAGGACCCGTGGAACCACCCTTTTACATGAAAGCCATTCTTGTGGAA
GGCCATAAAGCAGGATAA
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