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Homology
BLAST of mRNA_S-dermatodea_contig1088.589.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.880e-27 Identity = 51/69 (73.91%), Postives = 62/69 (89.86%), Query Frame = 1
Query: 1 VLWVAETDLGGNGGMQRTLLQKRVGEFDGREGEDVIPHWVTACVLHGDFRVKDQPKLSFFLAPWMPPEQ 207
+LWV E DLGG+GG+QRTLLQKRVGEFDGREG+D IP+WV ACVLHG+F K+Q K++FFLAPW+PPE+
Sbjct: 991 MLWVTEMDLGGHGGIQRTLLQKRVGEFDGREGQDAIPNWVMACVLHGEFHTKEQDKMAFFLAPWIPPER 1059
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | Protein of unknown function DUF3337 |
| Ec32 ortholog | Ec-06_007550.1 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 723 |
| Cds size | 678 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1088.589.1 >prot_S-dermatodea_contig1088.589.1 ID=prot_S-dermatodea_contig1088.589.1|Name=mRNA_S-dermatodea_contig1088.589.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=226bp
MQRTLLQKRVGEFDGREGEDVIPHWVTACVLHGDFRVKDQPKLSFFLAPW
MPPEQAPPPSTPRQQQQQQQQSASSSSLGKRGGGADAASASRGGGAAGGG
KAGLAGGSASGAHPASQRFTAPAQMLVSKVMAYVLSHDELGQHLESTGPE
GNEGGVRTEGGEGVAPREYPEDIVEVLCGDRVLEPHLYVGAIKQYIWNSN
AGGTLFLHYRSRHRSTGKGQRPTGV* back to topmRNA from alignment at S-dermatodea_contig1088:19373..21893+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1088.589.1 ID=mRNA_S-dermatodea_contig1088.589.1|Name=mRNA_S-dermatodea_contig1088.589.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2521bp|location=Sequence derived from alignment at S-dermatodea_contig1088:19373..21893+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCTGTGGGTTGCAGAGACGGACCTGGGTGGGAACGGGGGCATGCAGCG
GACGCTGCTGCAAAAGCGTGTGGGAGAGTTCGATGGGAGGGAGGTGCGGG
CACACACTTGGTGACGAGAGCGCGTTTTGTTCGGGGGGATGGATCGTTTT
CTTGCATGCGTTCCGAGAGTTTTGCGGAAGAGAGGTGTGTTTGTGTGTGT
TGGTTTGAACATGTTGTTTTCGATCTGTTGTTCTAACCGAAGTTTCCATG
TGCCCTGAGGGAAGATAATCGGGAAGGCAAGTCGTTCCGAAGATTCCGCG
GGGAGTTAATACCGTAGGTCGTGCCGCCCTTGCTGTGCCGGCAAGAAAGG
TTGTCTGCGGATCGAGCCACGCACGGTACAAATAGCCGCCGCCATCGGGG
CCTGAGTGCGGTACAAACGGGCACCTTCTTAGCGCTTTCCCAGGTCCATC
ACAAAGCCCACGACAGGTGCCTCTAAGAATCAGTCGGCGGGCACTTCGCC
ATATCGTACGGAGGGCGTCGAACGATGAATCGACTGCTGTGAAATCAAAT
GCGTCGACCAATATAATACATACACATATATATATATATATCGCATTTCG
TCTGTTGTTGCTGGTTCACACGCGACACCTCCCTAACCCCTACCCCCACC
CCGCCCTACCGCACGCTAACCGCCTGCCCATTCTCCGAATCTTGGCTGGT
CGATGCGAACTTTCCGACGTGGTACAAAAAAACTCGCGTACTACGACTAC
TACCGAAACGGCCGCCGTTACCTGCCAACCCTCGTCGGACAACAACAACA
ACGGCAAACCAACGACAACGATGGCACAGGGCGAAGACGTCATCCCGCAC
TGGGTAACGGCCTGCGTGCTCCACGGTGACTTCCGCGTGAAGGACCAGCC
GAAGTTATCCTTCTTCCTCGCCCCCTGGATGCCCCCAGAGCAAGCGCCCC
CCCCGTCAACCCCGCGGCAGCAGCAGCAGCAGCAGCAGCAGAGCGCCTCC
TCTTCCTCTCTCGGAAAACGAGGGGGCGGCGCAGACGCCGCTTCCGCCTC
GAGGGGAGGCGGGGCCGCAGGAGGGGGCAAAGCCGGGCTGGCGGGGGGGT
CTGCCTCGGGCGCCCACCCAGCCTCTCAGAGATTTACTGCCCCTGCGCAG
ATGCTCGTGTCCAAGGTGGGTCGCGTTGTGGGGTGGGTGGTGGTTGCTTC
GCTCGCTCGGGTACCGTTAGGGGTTGGAAGTGTCGCCCGGGGGAGGCAGG
TAACGATGGAATATATAGATATAAGACCGCCCGGCCGGCGTCGGAGTCTC
CGTCCGCGTTTTCTAGAAGGGGGAGCGAGAGGAGTTCATTAAAGTCATGA
GTCTCACTCGGTCAGCCGGCGTCGCGAACCGCGTGGGACAACCCCGGCCA
CAGAATAACGCACGGCGTTCTTGCGTACCGCCGTAACCCCCGTCTAACGC
GCCACCTCATGATGTACCTTCGCCTGACACTGCTGCGTTCCCGCTTGTGT
CTCATCGCGCCAAGGTAATGGCGTACGTCCTTTCGCACGACGAGCTGGGG
CAACACCTAGAGAGCACCGGACCCGAGGGAAATGAGGGTGGCGTCCGCAC
GGAAGGGGGCGAGGGAGTGGCCCCTCGCGAGTACCCCGAAGATATTGTGG
AGGTGCTGTGCGGCGACCGCGTGCTGGAACCACACCTTTACGTCGGTGAG
AAAAGAGTGGAACGGCGGATGCCCGGTGTCGTCTCCACTGGCGCAGGATC
AAGATGTCCGTCGTTTGTGGTTGTAAAATGGTAGCGTCATAACGTAACCG
AAGCTCCACAGGGTAGTACTAGCCTGCCGCTCTCGCCCTGAATCAAAGAA
CGAGTTGATCAAGTTCAAGTCTGCCCGGTTGCATCATAAGGCACTCCTCA
TGCGGGGTGGTAATTGTTTTCTTTTTTTTTCCTATTTTTGAGAGAGATAA
TTTTGTCGGTTCAATCGCGTTGGGCGGGGCACGTACGGCGATCAATGTAT
TACGGTGGAAGTGTTGAACGTGCTTGCATCTCATATCGCCCCTACCTTTG
TACAGCGGTGCATGTGTGTATGCGGGGAACATCTAAAGCGGTGCAGATGC
CGTAGTTCTGGGTTGTGGGGCGGCGGGGGGGGTGGGGGGGGGATGTTCCA
ACGCCACCGCCGTGACGGCATGACGTGTCGATCCCACGGACCTTCTTCGC
ACAAAACCCGGACTCCACGCGTCGCTGACAAAGCCTATGGAACCACGAGC
ACGTAAAATTTTCCGCCTATATGCAGTCCACAGGGGACGCACAGCAGTCG
CGCCCGTATGCGTTATCCGATCATCCTTCGTGGGTACATCGCTGCAACAT
CCAGCCCCCTCCTTTTCCGTGTTTGCTGTATATGCTGCGCGAAATGACAC
GGATGCAGGCGCGATAAAGCAGTACATATGGAATTCGAATGCGGGAGGCA
CCTTGTTTTTGCACTACAGGTCTCGCCATCGATCAACGGGCAAAGGGCAG
CGACCGACCGGAGTATAGGGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1088:19373..21893+ >mRNA_S-dermatodea_contig1088.589.1 ID=mRNA_S-dermatodea_contig1088.589.1|Name=mRNA_S-dermatodea_contig1088.589.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at S-dermatodea_contig1088:19373..21893+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGCGGACGCTGCTGCAAAAGCGTGTGGGAGAGTTCGATGGGAGGGA
GATGCAGCGGACGCTGCTGCAAAAGCGTGTGGGAGAGTTCGATGGGAGGG
AGGGCGAAGACGTCATCCCGCACTGGGTAACGGCCTGCGTGCTCCACGGT
GACTTCCGCGTGAAGGACCAGCCGAAGTTATCCTTCTTCCTCGCCCCCTG
GATGCCCCCAGAGCAAGCGCCCCCCCCGTCAACCCCGCGGCAGCAGCAGC
AGCAGCAGCAGCAGAGCGCCTCCTCTTCCTCTCTCGGAAAACGAGGGGGC
GGCGCAGACGCCGCTTCCGCCTCGAGGGGAGGCGGGGCCGCAGGAGGGGG
CAAAGCCGGGCTGGCGGGGGGGTCTGCCTCGGGCGCCCACCCAGCCTCTC
AGAGATTTACTGCCCCTGCGCAGATGCTCGTGTCCAAGGGCGAAGACGTC
ATCCCGCACTGGGTAACGGCCTGCGTGCTCCACGGTGACTTCCGCGTGAA
GGACCAGCCGAAGTTATCCTTCTTCCTCGCCCCCTGGATGCCCCCAGAGC
AAGCGCCCCCCCCGTCAACCCCGCGGCAGCAGCAGCAGCAGCAGCAGCAG
AGCGCCTCCTCTTCCTCTCTCGGAAAACGAGGGGGCGGCGCAGACGCCGC
TTCCGCCTCGAGGGGAGGCGGGGCCGCAGGAGGGGGCAAAGCCGGGCTGG
CGGGGGGGTCTGCCTCGGGCGCCCACCCAGCCTCTCAGAGATTTACTGCC
CCTGCGCAGATGCTCGTGTCCAAGGTAATGGCGTACGTCCTTTCGCACGA
CGAGCTGGGGCAACACCTAGAGAGCACCGGACCCGAGGGAAATGAGGGTG
GCGTCCGCACGGAAGGGGGCGAGGGAGTGGCCCCTCGCGAGTACCCCGAA
GATATTGTGGAGGTGCTGTGCGGCGACCGCGTGCTGGAACCACACCTTTA
CGTCGGTAATGGCGTACGTCCTTTCGCACGACGAGCTGGGGCAACACCTA
GAGAGCACCGGACCCGAGGGAAATGAGGGTGGCGTCCGCACGGAAGGGGG
CGAGGGAGTGGCCCCTCGCGAGTACCCCGAAGATATTGTGGAGGTGCTGT
GCGGCGACCGCGTGCTGGAACCACACCTTTACGTCGGCGCGATAAAGCAG
TACATATGGAATTCGAATGCGGGAGGCACCTTGTTTTTGCACTACAGGTC
TCGCCATCGATCAACGGGCAAAGGGCAGCGACCGACCGGAGTATAGGCGC
GATAAAGCAGTACATATGGAATTCGAATGCGGGAGGCACCTTGTTTTTGC
ACTACAGGTCTCGCCATCGATCAACGGGCAAAGGGCAGCGACCGACCGGA
GTATAG back to top
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