mRNA_S-dermatodea_contig1088.588.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1088.588.1
Unique NamemRNA_S-dermatodea_contig1088.588.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)

HSP 1 Score: 744 bits (1922), Expect = 3.950e-254
Identity = 483/888 (54.39%), Postives = 526/888 (59.23%), Query Frame = 1
Query:    1 APARKRRLVTYYMQPLSEQPGYAGPRQDGHRFGVNRIVRLGEDSLLSAGRDGVVRRWDVSGML---SAKGS-GVGRRDGGENGDEPS--DAQPRCTGIFASHTDWVTGLAVAAGRIMASSSNDGTLKLWDLAGADRAVAGAAGAGDGEERYAGLGAR-----------------------------FGGLGAVATEAHPVGVANGAGGRSAAGLGNDGGGGGSATLDKNATPVGVAVKPAPSLRPSPLATVAGHGDYVKCLTYAPEGGVLVSGGLDKRILLWDLQRMAAPLMAL------------------------------STGEEDGMGVDSPVRGAKHGV-RPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXXVWDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCK-DGGGAALRTGRPTAGTAESS-----------------------------DASQHSLEGEDAGLDEGACLLSGPVETIRGQPGIVRHAVLNNRRHVLTEDDATP-PNVALWDVTKAKQIEAFPPGTVMEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVDARGERQTFLASPXXXXXXXXXXXXXX----GVSTA--ATEGNTAR----------------------AAGVSKGRDG------------------------------------PVRVAKARSVQDEVKVNLGDAVLRGLFSKWIEQHLRLDGDG 2181
            APARKRRLVTY MQPL+EQPG        HRFGVNRI+RLGED LLSAGRDGV+RRWDVS ML   +A+GS G GRRD  ++ DE      QP CTG+FASHTDWVTGLAVA GRIMAS+S DGTLKLWDLA ADRA            R A  G R                              GGLG    EA   G ANG         G  G    +A                   RP+ LATVAGHGDYVKCLTYA + GVLVSGGLDKRILLWDLQRM+APLM L                              S G     G    V G + G   P  S  GEG W HLRDP RV LR G AAAGPNEV ELCRQNKGSV+CV A+ADA+LVASGGTDRMIRLLDPRAG   AAK+CKLDGH DNVRC                    VWDVRQQCCL VYELPGGSVWAMQPSP D DVYYSGGRGRRVYRTDFRTGES LVC+T+SEVLDM LELG       +   E+ M MWLSST+P I+LWG +  GGG ALR+GRP A    ++                             D ++   E    G + G CLL  PV  IRGQPG+VRH VLNNRRHVLTEDDA P PNVALWDVTKA+Q+EA+PPGTV+EDKERSL EIIAVRPWFT+ THLGTPLVSLSES VFDGELYAVDARGERQT LASP XXXXXXXXXXXX     GV+TA  ATE   +R                       A V+K   G                                     VR  K RSVQDEVKVNLGDA LRGLFS+W++QHLRL  DG
Sbjct:   16 APARKRRLVTYTMQPLNEQPG--------HRFGVNRIMRLGEDILLSAGRDGVIRRWDVSSMLDQAAARGSAGSGRRDDADDADEHQLQHPQPPCTGVFASHTDWVTGLAVAEGRIMASASYDGTLKLWDLAAADRA------------RNADKGGREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLGGQGEEA--AGEANGL------RTGMHGVQDTAARAXXXXXXXXXXXXXXXXXRPNALATVAGHGDYVKCLTYAEQRGVLVSGGLDKRILLWDLQRMSAPLMVLRGGSGAXXXXXXXXXXXXXXXXXXXXXMMNSAGYSPAAGRQQ-VGGQRQGAGAPWLSDEGEGGWPHLRDPLRVALRAGQAAAGPNEVLELCRQNKGSVHCVAAAADASLVASGGTDRMIRLLDPRAGGAQAAKICKLDGHGDNVRCVKIDEGGTRVVSGSSDGTIRVWDVRQQCCLGVYELPGGSVWAMQPSPCDLDVYYSGGRGRRVYRTDFRTGESSLVCVTDSEVLDMELELGRGGGTESSGPYEEPMFMWLSSTQPHIALWGGEASGGGLALRSGRPAASAGVAAVADGXXXXXXXXXXXXXXXVFDVTPPFPEDPAERGGEAGGMGGEGGGCLLDAPVGLIRGQPGVVRHKVLNNRRHVLTEDDARPLPNVALWDVTKARQVEAYPPGTVLEDKERSLLEIIAVRPWFTVDTHLGTPLVSLSESNVFDGELYAVDARGERQTLLASPPXXXXXXXXXXXXAAGDNGVATAEPATEPKVSRQPAPSSSSSLSSALPSASQGKGGAAVAKTTQGGNADGSVEGGAVATXXXXXXXXXXXXXXXXXXXXXXXVRAPKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLHDDG 874          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: D8LJZ3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ3_ECTSI)

HSP 1 Score: 632 bits (1629), Expect = 1.770e-215
Identity = 416/846 (49.17%), Postives = 451/846 (53.31%), Query Frame = 1
Query:   37 MQPLSEQPGYAGPRQDGHRFGVNRIVRLGEDSLLSAGRDGVVRRWDVSGML---SAKGS-GVGRRDGGENGDEPSDAQPRCTGIFASHTDWVTGLAVAAGRIMASSSNDGTLKLWDLAGADRAVAGAAGAGDGEERYAGLGARFGGLGAVATEAHPVGVANGAGGRSAAGLGNDGGGGGSATLDKNATPVGVAVKPAPSLRPSPLATVAGHGDYVKCLTYAPEGGVLVSGGLDKRILLWDLQRMAAPLMALSTGE----------EDGMGVDSPVRGAKHGVRPT--------------ASW---GGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXXVWDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCK-DGGGAALRTGRP--TAGTAESSDASQHSLEGEDAGLD-------------------------EGACLLSGPVETIRGQPGIVRHAVLNNRRHVLTEDDATP-PNVALWDVTKAKQIEAFPPGTVMEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVDARGERQTFLASPXXXXXXXXXXXXXXGVST-------AATEGNTAR----------------------AAGVSKGRDG------------------------------------------PVRVAKARSVQDEVKVNLGDAVLRGLFSKWIEQHLRLDGDG 2181
            MQPL+ QPG        HRFGVNRI+RLGEDSLLSAGRDGVVRRWDVS ML   +A+GS G GRRD G +G                                                                                                                                LRP+ LATVAGHGDYVKCLTYA + GVLVSGGLDKRILLWDLQRM+APLM L  G                          G  P               A W    GEG W HLRDP RV LR G AAAGPNEV ELCRQNKGSV+CV A+ADA+LVASGGTDRMIRLLDPRAG G AAKVCKLDGH DNVRC                    VWDVRQQCCL VYELPGGSVWAMQPSP D DVYYSGGRGRRVYRTDFRTGES LVC+T+SEVLDM LELG       T   EQ MSMWLSST+P I+LWG +  GGG  LR+GRP  +AG +  +D      E +D  +D                          G CLL  PV  IRGQPG+VRH VLNNRRHVLTEDDA P PNVALWDVTKA+Q+EA+PPGTV+EDKERSL EIIAVRPWFT+ THLGTPLVSLSES VFDGELYAVDARGERQT LASP XXXXXXXXXXX             AATE   +R                       A V+K  +G                                           +R  K RSVQDEVKVNLGDA LRGLFS+W++QHLRL GDG
Sbjct:    1 MQPLNGQPG--------HRFGVNRILRLGEDSLLSAGRDGVVRRWDVSSMLDQAAARGSAGSGRRDDGMHGGXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------LRPNALATVAGHGDYVKCLTYAEQRGVLVSGGLDKRILLWDLQRMSAPLMVLRGGSGXXXXXXXXXXXXXXXXXXXXXXXXGYSPXXXXXXXXXXXQGAGAPWLSDEGEGGWPHLRDPLRVALRAGQAAAGPNEVLELCRQNKGSVHCVAAAADASLVASGGTDRMIRLLDPRAGGGQAAKVCKLDGHGDNVRCVKIDEGGTRVVSGSSDGTIRVWDVRQQCCLGVYELPGGSVWAMQPSPCDLDVYYSGGRGRRVYRTDFRTGESSLVCVTDSEVLDMELELGREGGSDGTDSCEQPMSMWLSSTQPHIALWGGEASGGGLVLRSGRPAASAGASAVADGEGDRAEEDDMDMDVFGVTPPFAEDPAEGGGEAGGMGGERGGCLLDAPVGLIRGQPGVVRHKVLNNRRHVLTEDDARPLPNVALWDVTKARQVEAYPPGTVLEDKERSLLEIIAVRPWFTVDTHLGTPLVSLSESNVFDGELYAVDARGERQTLLASPSXXXXXXXXXXXPAAADNGVVATEEAATEPKFSRQPAPSSSSSLSSPLPSASQGKGGAAVAKTAEGGTADGSVEGGAGATVAAAPKGVAAGAEPXXXXXXXXXXXXXXALRAPKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLHGDG 734          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: A0A7J7H059_CAMSI (Uncharacterized protein n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7H059_CAMSI)

HSP 1 Score: 169 bits (429), Expect = 4.730e-40
Identity = 140/447 (31.32%), Postives = 198/447 (44.30%), Query Frame = 1
Query:  643 TVAGHGDYVKCLTYAPEGG-VLVSGGLDKRILLWDLQRMAAPLMALSTGEED-------GMGVDSPVRGAKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXXV-------------WDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCKDGGGAAL--RTGRPTAGTAESSDASQHSLEGEDAGLDEGACLLSGPVETIRGQPGIVRHAVLNNRRHVLTEDDATPPNVALWDVTKAKQIEAFPPGTV-MEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVD 1911
            T+  H DYV  L  AP+   V+ SGGL   + +WDL+   AP    S   ED       G+G   P+  A+  +    S        H+      V    +AA G  E          SVY +  +    L+ SGGT++++R+ DPR GS    K  KL GH DNVR                     +             WD+ QQ C+  Y +   SVWA+  S S F   YSGGR   +Y TD  T ES L+C     +L +AL                   +W+++++  +  W  +      +  R G   AG    S A + SLEG          +   P  TI G PGIV+H +LNNRRHVLT+D A   +V LW++TK   +E +  G V  E+K+  L E++++  WFT+ T LG+  V L     F  E+Y+ D
Sbjct:  385 TLRQHSDYVTSLAAAPKNSNVVASGGLGGEVFIWDLEAAVAPTSKTSDATEDDCSNGVNGVGNSVPITSART-ISSNNSIS-----LHMTQSHGYVP---IAAKGHKE----------SVYALGMNDSGTLLVSGGTEKVVRVWDPRTGS----KTMKLRGHTDNVRALLLDSTGRLVALSCIAMLIWILGFYDQFSFFNRLWDLGQQRCVHSYAVHTDSVWALA-SNSTFSHVYSGGRDLSLYLTDLATRESILLCTKEHPILQLALH---------------DDGIWVATSDSSVDKWPVEVRNPQKVFQRGGSFLAGNLSFSRA-RASLEGSIP-----VPVYKEPSVTIPGTPGIVKHEILNNRRHVLTKDTAG--SVKLWEITKGIVVEDY--GEVSFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSAD 782          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: A0A1D6ITS9_MAIZE (Transducin/WD40 repeat-like superfamily protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6ITS9_MAIZE)

HSP 1 Score: 161 bits (408), Expect = 9.430e-38
Identity = 170/670 (25.37%), Postives = 251/670 (37.46%), Query Frame = 1
Query:   10 RKRRLVTYYMQPLSEQPGYAGPR----QDGHRFGVNRIVRLGEDSLLSAGRDGVVRRWDVSGMLSAKGSGVGRRDGGENGDEPSDAQPRCTGIFASHTDWVTGLAVAAGRIMASSSNDGTLKLWDLAGADRAVAGAAGAGDGEERYAGLGARFGGLGAVATEAHPVGVANGAGGRSAAGLGNDGGGGGSATLDKNATPVGVAVKPAPSLRPSPLATVAGHGDYVKCLTYAPEGG-VLVSGGLDKRILLWDLQRMAAPLMALSTGEEDGM--GVDSPVRGAKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXX--------------------------VWDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCKDGGGAALRTGRPTAGTAESSDASQHSLEGEDAGLDEGACL--LSGPVETIRGQPGIVRHAVLNNRRHVLTEDDATPPNVALWDVTKAKQIEAFPPGTV-MEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVD 1911
            RK +  TY +    ++   AG       DG  F  +       D L S  RDG ++RW+++                 NGD         +G F SH DWV   A+  G  + S S+D T+K+W+                                                        +DG                           +   T+  H DYV CL  A     ++ SGGL   + +WDL    AP+      +ED +  G   P       +  +++        H   P        +AA G          +K SVY +  +    L+ SGGT++++R+ DPR GS    K  KL GH DN+R                                               +WD+ QQ C+  Y +   SVWA+  +P+ F   YSGGR + VY TD  T ES L+C     VL ++L               Q  ++W+++T+  +  W  +       RT +       S  A   S     A L+  A +     P   I G P I++H ++NNRRHVLT+D  T  +V LW++T+   IE F  G V  EDK++ L E++++  WFT+   LG   V L     F  E+YAVD
Sbjct:   17 RKEKRFTYVLNDADDKKHCAGINCLAYLDGSIFSTS-------DHLFSGSRDGTLKRWELN-----------------NGDASF------SGTFESHVDWVND-AIIVGDKLVSCSSDTTIKVWNCF------------------------------------------------------SDG---------------------------ACTRTLRRHSDYVICLAAAENNSNIVASGGLGGEVFIWDLDAALAPVAKSVDAKEDEVPNGNSGPALTTLCSINSSSNIASSNGQSHGYSP--------IAAKG----------HKDSVYALAMNDTGTLLLSGGTEKVVRVWDPRTGS----KNMKLRGHTDNIRALLVDSTGSWSVFETFKYCLFSSNHLLIVFYNVFRXXLSGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALASTPA-FGHVYSGGRDQSVYLTDLSTRESLLLCTNEYPVLQLSL---------------QDDTIWVATTDSSVYGWPAEG------RTPQKVFEKGASFLAGNLSFSRARASLEGSAPVPVYKEPSFVIPGVPAIIQHEIMNNRRHVLTKD--TTGSVKLWEITRGAVIEDF--GKVSFEDKKKELFEMVSIPAWFTMDARLGCLSVHLDTPQCFSAEIYAVD 526          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: A0A443PTL5_9MAGN (WD repeat-containing protein 48 isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PTL5_9MAGN)

HSP 1 Score: 157 bits (397), Expect = 1.700e-36
Identity = 131/439 (29.84%), Postives = 195/439 (44.42%), Query Frame = 1
Query:  640 ATVAGHGDYVKCLTYAPE------------GGVLVSGGLDKRILLWDLQRMAAPLMALSTGEEDGMGVDSPVRGAKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXXVWDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGC--KDGGGAALRTGRPTAGTAESSDASQHSLEGEDAGLDEGACLLSGPVETIRGQPGIVRHAVLNNRRHVLTEDDATPPNVALWDVTKAKQIEAFPPGTV-MEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVD 1911
            AT   H D+V  +  A +            G ++ SGGL   + +WDL+    P+       ED       V G  H   P            L   S + L     + G   +    + +K SVY +  +    L+ SGGT++++R+ DPR GS    K  KL GH DN+R                     +WD+ QQ C+  Y +   SVW++  +P+ F   YSGGR   +Y TD  T ES L+C     +L +AL               Q   +W+++ +  +  W    ++   A  R G   AG    + A +  LEG        A +   P  T+ G PGIV+H +LNNRR VLT+D A   +V LW++T+   +E +  G +  E+K+  L E+I++  WFT  T LG+  V L     F  E+YAVD
Sbjct:   78 ATFESHVDWVNDVVLAGDTLVSCSSDTTLKGNIVASGGLGGEVFIWDLEAALLPVEKSIDAMEDDSSNGITVSG--HSGLPITGL------LSLNSSSNISLHT-TQSHGYRPLAT--KGHKESVYALAMNESGTLLVSGGTEKVVRVWDPRTGS----KNMKLRGHTDNIRALLLDATGS------------LWDLGQQRCVHSYAVHTDSVWSLASTPT-FSHVYSGGRDLSLYLTDLSTRESLLLCTNEHPILQLAL---------------QDDGIWVATADSSLHRWPAEGRNPQKAFQRGGSFLAGNLSFTRA-RACLEGSTP-----APVYKEPSLTVPGTPGIVKHEILNNRRLVLTKDTAD--SVKLWEITRGIVVEDY--GKISFEEKKEELFEMISIPAWFTTDTRLGSLSVHLETPQCFSAEMYAVD 463          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: A0A7I4BYF2_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4BYF2_PHYPA)

HSP 1 Score: 155 bits (392), Expect = 2.200e-36
Identity = 123/425 (28.94%), Postives = 183/425 (43.06%), Query Frame = 1
Query:  655 HGDYVKCLTYAPEGGVLVSGGLDKRILLWDLQRMAAPLM-ALSTGEEDG-MGVDSPVRGAKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXXVWDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCKDGGGAALRTGRPTAGTAESSDASQHSLEGEDAGLDEGACLLSGPVETIRGQPGI---VRHAVLNNRRHVLTEDDATPPNVALWDVTKAKQIEAFPPGTV-MEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVD 1911
            H DYV  L  A     + SGGL + + +WDL+    P+  A +   EDG    D  +    H                       V    V  +         + +K SVY +  +    ++ SGGT++++R+ DPR GS    K  KL GH DNVR                     +WD+ QQ C+  Y +   SVWA+  +PS   VY   GR   VY TD  T ES L+C     VL +AL++ EW              +W ++T+  +  W  ++   +A +T                        L   +  ++G +   R +  I     HA+LN+RRHVLT+D A    V  W++T+   +E +  G V  E+KE+ L E+++V  WFT+ T LG+  V L     F  E+YAVD
Sbjct:  104 HPDYVTSLAAARHNNTVASGGLSREVFIWDLEAAVVPVARAQNDANEDGNFEHDRAIASNNH-----------------------VAAASVQKSSLGYAPLPAKGHKESVYALSMNGMGTILVSGGTEKVVRVWDPRTGS----KQMKLKGHTDNVRALLLDPTGR------------LWDLGQQRCIHSYAVHIDSVWALASTPSFSHVY--SGRDFSVYLTDLSTRESILLCKEEHPVLGLALQVDEW--------------LWAATTDSSLHKWPARER--SATKT------------------------LQRTSSFVAGLLPFARARANIDGSAPHAILNDRRHVLTKDAACI--VKRWEITRGAVVEDY--GKVDFEEKEKKLFEMVSVPAWFTMDTRLGSMSVHLDTPQCFSAEMYAVD 443          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: A0A2K1LB42_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LB42_PHYPA)

HSP 1 Score: 155 bits (392), Expect = 6.560e-36
Identity = 123/425 (28.94%), Postives = 183/425 (43.06%), Query Frame = 1
Query:  655 HGDYVKCLTYAPEGGVLVSGGLDKRILLWDLQRMAAPLM-ALSTGEEDG-MGVDSPVRGAKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXXVWDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCKDGGGAALRTGRPTAGTAESSDASQHSLEGEDAGLDEGACLLSGPVETIRGQPGI---VRHAVLNNRRHVLTEDDATPPNVALWDVTKAKQIEAFPPGTV-MEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVD 1911
            H DYV  L  A     + SGGL + + +WDL+    P+  A +   EDG    D  +    H                       V    V  +         + +K SVY +  +    ++ SGGT++++R+ DPR GS    K  KL GH DNVR                     +WD+ QQ C+  Y +   SVWA+  +PS   VY   GR   VY TD  T ES L+C     VL +AL++ EW              +W ++T+  +  W  ++   +A +T                        L   +  ++G +   R +  I     HA+LN+RRHVLT+D A    V  W++T+   +E +  G V  E+KE+ L E+++V  WFT+ T LG+  V L     F  E+YAVD
Sbjct:  104 HPDYVTSLAAARHNNTVASGGLSREVFIWDLEAAVVPVARAQNDANEDGNFEHDRAIASNNH-----------------------VAAASVQKSSLGYAPLPAKGHKESVYALSMNGMGTILVSGGTEKVVRVWDPRTGS----KQMKLKGHTDNVRALLLDPTGR------------LWDLGQQRCIHSYAVHIDSVWALASTPSFSHVY--SGRDFSVYLTDLSTRESILLCKEEHPVLGLALQVDEW--------------LWAATTDSSLHKWPARER--SATKT------------------------LQRTSSFVAGLLPFARARANIDGSAPHAILNDRRHVLTKDAACI--VKRWEITRGAVVEDY--GKVDFEEKEKKLFEMVSVPAWFTMDTRLGSMSVHLDTPQCFSAEMYAVD 443          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: A0A175YEU5_DAUCS (WPP domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YEU5_DAUCS)

HSP 1 Score: 155 bits (393), Expect = 1.770e-35
Identity = 169/644 (26.24%), Postives = 254/644 (39.44%), Query Frame = 1
Query:   10 RKRRLVTYYMQPLSEQPGYAGPRQDGHRFGVNRIVRL------GEDSLLSAGRDGVVRRWDVSGMLSAKGSGVGRRDGGENGDEPSDAQPRCTGIFASHTDWVTGLAVAAGRIMASSSNDGTLKLWDLAGADRAVAGAAGAGDGEERYAGLGARFGGLGAVATEAHPVGVANGAGGRSAAGLGNDGGGGGSATLDKNATPVGVAVKPAPSLRPSPLATVAGHGDYVKCLTYAPEGG-VLVSGGLDKRILLWDLQRMAAPLMALSTGEEDGMGVDSPVRGAKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXXVWDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCK--DGGGAALRTGRPTAGTAESSDASQHSLEGEDAGLDEGACLLSGPVETIRGQPGIVRHAVLNNRRHVLTEDDATPPNVALWDVTKAKQIEAFPPGTV-MEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVD 1911
            RK + +TY +    +           H  G+N +  L      G DSL +  RDG ++RW ++                       D     +  F SH DWV    +A G  + S S+D T+K W+                                          ++NG                                        +   T+  H DYV CL  A   G ++ SGGL   + +WD++   +P+   S   ED     S   GA +  +PT S             S  +      + G   +    + +K SVY +  +   +L+ SGGT++++R+ DPR GS    K  KL         XXXXXXX             +WD+ QQ C+  Y +   SVWA+  +P+ F   YSGGR   +Y TD  T ES L+C     +L ++L                  S+W ++T+  +  W  +  +   A  R G   AG    S A + SLEG          +   P  +I G  GIV+H +LNNRRHVLT+D  T  +V LW++T+   IE +  G V  E K+  L E++++  WFT+ T LG+  + L     F  E+Y+ D
Sbjct:  152 RKEKRLTYVLSDADDTK---------HCAGINCLALLKSPVPDGHDSLFTGSRDGTLKRWTIA-----------------------DNNATFSTTFESHIDWVNDAVLAGGNTLVSCSSDTTVKTWNS-----------------------------------------LSNG----------------------------------------TCTRTLRQHSDYVTCLAAAERNGNIVASGGLGGEVFIWDVEAALSPVTKSSDTAEDDC---SNGNGAGNS-QPTTS-------LRTVGSSNSISLHTTQSQGYVPIT--AKGHKESVYALAMNDTGSLLVSGGTEKVVRVWDPRNGS----KTMKLXXXXXXXXXXXXXXXXR------------LWDLGQQRCVHSYAVHTDSVWALASTPT-FSHVYSGGRDLSLYLTDLSTRESILLCTKEHPILQLSLH---------------DDSIWAATTDSSVHRWPAEVHNPQKAFQRGGSFLAGNLSFSRA-RASLEGSTP-----VPVYREPSLSIPGTRGIVQHEILNNRRHVLTKD--TVGSVKLWEITRGVVIEDY--GEVSFEKKKEDLFEMVSIPAWFTVDTRLGSLSIHLDTPQCFSAEMYSAD 627          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: UPI0006449468 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449468)

HSP 1 Score: 155 bits (391), Expect = 2.370e-35
Identity = 145/424 (34.20%), Postives = 205/424 (48.35%), Query Frame = 1
Query:  637 LATVAGHGDYVKCLTYAPEGGVLVSGGLDKRILLWDLQRMAAPLMALSTGEEDGMGVDSPVRGAKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKLDGHKDNVRCXXXXXXXXXXXXXXXXXXXXVWDVRQQCCLEVYE-LPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCKDGGGAALRTGRPTAGTAESSDASQHSLEGEDAGLDEGACLLSGPVETIRGQPGIVRHAVLNNRRHVLTEDDATPPNVALWDVTKAKQIEAFPPGTVMEDKE-RSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELY 1902
            + T   H DYVK L YAP      S GLD  I+LWDL  + +P+  L  G     G DS                                R  ++ AG + +         S+Y +  + DA+LV  G T+R IR  D   G     K+ KL GH DNVR XXXXXXXXXXXXXXXXXXXX   +  Q C+  ++ +   SVW++  + S+F   YSGGR   VY TD +T  S LVC  +  VL +         +H     E+S S+W+S+T+  I  W  +D G       R      E S                   ++  P+  I G+PGI++H ++NNRRHVLT D  T   V LWDVT+ ++++ +  G V  DK+   L+EI+++  W +I T  G+  V+L +S  F+  ++
Sbjct:  221 IRTERKHDDYVKALAYAPGANYFASSGLDSHIMLWDLN-VFSPVTTLPNG-----GGDSTSNNYTVPQNXXXXXXXXXXXXXXXXXXXXXSRFNISRAGGDNI---------SIYSLAINNDASLVLVGSTERTIRAWDVMGGK----KIFKLKGHTDNVRXXXXXXXXXXXXXXXXXXXXXXXXLGMQKCIHTFDDIHNDSVWSLAVT-SNFSHVYSGGRDGLVYSTDLKTFHSSLVCKESGPVLKI---------LH----NEKSRSLWVSTTDSVIKNWSIEDIGQLPKSEPRFIDDDKEQS------------------FVVKEPLAVIPGRPGIIKHHIMNNRRHVLTMD--TNDTVQLWDVTRGEEVQTY--GKVDFDKQVEELQEIVSIPKWASIDTKTGSLSVTLEQSQCFNAYVH 589          
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Match: A0A830CCS2_9LAMI (WD repeat-containing protein 48 n=2 Tax=Orobanchaceae TaxID=91896 RepID=A0A830CCS2_9LAMI)

HSP 1 Score: 145 bits (367), Expect = 1.380e-32
Identity = 167/672 (24.85%), Postives = 247/672 (36.76%), Query Frame = 1
Query:    7 ARKRRLVTYYMQPLSEQPGYAGPRQDGHRFGVNRIVRL---GEDS---LLSAGRDGVVRRWDVSGMLSAKGSGVGRRDGGENGDEPSDAQPRCTGIFASHTDWVTGLAVAAGRIMASSSNDGTLKLWDLAGADRAVAGAAGAGDGEERYAGLGARFGGLGAVATEAHPVGVANGAGGRSAAGLGNDGGGGGSATLDKNATPVGVAVKPAPSLRPSPLATVAGHGDYVKCLTYAPE-GGVLVSGGLDKRILLWDLQRMAAPLMALS-TGEEDGMGVDSPVRG-----AKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGPNEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKVCKL---------------------DGHKDNVRCXXXXXXXXXXXXXXXXXXXXVWDVRQQCCLEVYELPGGSVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALELGEWVDMH*TSGREQSMSMWLSSTEPDISLWGCKDGGGAAL--RTGRPTAGTAESSDASQHSLEGEDAGLDEGACLLSGPVETIRGQPGIVRHAVLNNRRHVLTEDDATPPNVALWDVTKAKQIEAFPPGTV-MEDKERSLREIIAVRPWFTIGTHLGTPLVSLSESTVFDGELYAVD 1911
            +RK + +TY +    +           H  G+N +  L   G+D    L++  RD  ++RW ++             DG             C+  F SH DWV    +A G  + S S+D T+K+W                                                                      N    G  VK           T+  H DYV CL    +    + S GL   + +WDL+   AP+   +   EED     + V G     +   +RPT S             S  +        G   V    + +K SVY +  +    L+ SGGT++++R+ DPR GS    K  KL                           +RC                    +WD+ QQ C+  Y +   SVWA+  SP+ F   YSGGR R +Y TD  T ES L+C  +  +  +AL                   MW+++T+  +  W  +      +  R G   AG    S A + SLEG          +   P  +I G   IV+H +LNNRRHVLT+D A    V LW++T+   I+ +  G V  E K+  L E+++V  WFT+ T LG+  V L     F  E+Y+ D
Sbjct:   16 SRKEKRLTYVLNDADDTK---------HCAGINCLAVLKSPGQDECDYLITGSRDSTLKRWSLA------------EDGAT-----------CSATFESHVDWVNDAVLAGGNTLVSCSSDATVKVW----------------------------------------------------------------------NCLSDGKCVK-----------TLRQHSDYVTCLAAVEKKSNFVASAGLGGEVFIWDLEAALAPVSKSNDVAEED---CSTTVNGLSTSLSNTSLRPTGS-------------SNNISVHSTQCQGYTPVA--AKGHKESVYALATNDRGTLLVSGGTEKVVRVWDPRTGS----KTMKLRXXXXXXXXXXXXXXXXXXXXXXXXSMIRCDVVTYELKITR---------LWDLGQQRCVHSYAVHTDSVWALASSPT-FSHVYSGGRDRSLYLTDLATRESVLLCNEDHPISQLALH---------------DDGMWVATTDSSVHRWPAEAHNPMKVFQRGGSFLAGNLSFSRA-RVSLEGSTP-----VPVHREPSFSIVGTSAIVQHEILNNRRHVLTKDTAG--TVKLWEITRGVVIDNY--GEVSFEKKKEELFEMVSVPAWFTVDTRLGSLSVHLDTPQCFSAEMYSAD 517          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1088.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCV2_9PHAE3.950e-25454.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ3_ECTSI1.770e-21549.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7J7H059_CAMSI4.730e-4031.32Uncharacterized protein n=1 Tax=Camellia sinensis ... [more]
A0A1D6ITS9_MAIZE9.430e-3825.37Transducin/WD40 repeat-like superfamily protein n=... [more]
A0A443PTL5_9MAGN1.700e-3629.84WD repeat-containing protein 48 isoform X1 n=1 Tax... [more]
A0A7I4BYF2_PHYPA2.200e-3628.94Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
A0A2K1LB42_PHYPA6.560e-3628.94Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A175YEU5_DAUCS1.770e-3526.24WPP domain-containing protein n=1 Tax=Daucus carot... [more]
UPI00064494682.370e-3534.20hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A830CCS2_9LAMI1.380e-3224.85WD repeat-containing protein 48 n=2 Tax=Orobanchac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1088contigS-dermatodea_contig1088:12496..19090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score374.4
Seed ortholog evalue7.6e-101
Seed eggNOG ortholog2880.D8LJZ3
Preferred nameWDR48
KEGG koko:K15361
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000724,GO:0000725,GO:0001501,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007276,GO:0007283,GO:0007338,GO:0007548,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008284,GO:0008406,GO:0008584,GO:0009566,GO:0009653,GO:0009790,GO:0009887,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019953,GO:0022414,GO:0030162,GO:0030428,GO:0031323,GO:0031325,GO:0031396,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0034641,GO:0035264,GO:0035295,GO:0036211,GO:0036459,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042592,GO:0042769,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045862,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048513,GO:0048518,GO:0048520,GO:0048522,GO:0048568,GO:0048589,GO:0048608,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048872,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051286,GO:0051606,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072520,GO:0080090,GO:0090085,GO:0090304,GO:0090325,GO:0090326,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1902525,GO:1903003,GO:1903320,GO:1903322,GO:1903827,GO:1903829,GO:2000008,GO:2000010
EggNOG free text desc.regulation of protein monoubiquitination
EggNOG OGsKOG0308@1,KOG0308@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size2181
Cds size1377
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924178.1347747-UTR-S-dermatodea_contig1088:12495..125311622924178.1347747-UTR-S-dermatodea_contig1088:12495..12531Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1088 12496..12531 +
1694079071.5335844-UTR-S-dermatodea_contig1088:12495..125311694079071.5335844-UTR-S-dermatodea_contig1088:12495..12531Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1088 12496..12531 +
1622924178.20595-UTR-S-dermatodea_contig1088:17039..173021622924178.20595-UTR-S-dermatodea_contig1088:17039..17302Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1088 17040..17302 +
1694079071.6112337-UTR-S-dermatodea_contig1088:17039..173021694079071.6112337-UTR-S-dermatodea_contig1088:17039..17302Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1088 17040..17302 +
1622924178.21708-UTR-S-dermatodea_contig1088:18232..186591622924178.21708-UTR-S-dermatodea_contig1088:18232..18659Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1088 18233..18659 +
1694079071.6192474-UTR-S-dermatodea_contig1088:18232..186591694079071.6192474-UTR-S-dermatodea_contig1088:18232..18659Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1088 18233..18659 +
1622924178.2248783-UTR-S-dermatodea_contig1088:19012..190901622924178.2248783-UTR-S-dermatodea_contig1088:19012..19090Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1088 19013..19090 +
1694079071.6272926-UTR-S-dermatodea_contig1088:19012..190901694079071.6272926-UTR-S-dermatodea_contig1088:19012..19090Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1088 19013..19090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924178.147453-CDS-S-dermatodea_contig1088:12531..127181622924178.147453-CDS-S-dermatodea_contig1088:12531..12718Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 12532..12718 +
1694079071.5464578-CDS-S-dermatodea_contig1088:12531..127181694079071.5464578-CDS-S-dermatodea_contig1088:12531..12718Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 12532..12718 +
1622924178.1555989-CDS-S-dermatodea_contig1088:14072..150011622924178.1555989-CDS-S-dermatodea_contig1088:14072..15001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 14073..15001 +
1694079071.5551498-CDS-S-dermatodea_contig1088:14072..150011694079071.5551498-CDS-S-dermatodea_contig1088:14072..15001Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 14073..15001 +
1622924178.1634395-CDS-S-dermatodea_contig1088:15642..157491622924178.1634395-CDS-S-dermatodea_contig1088:15642..15749Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 15643..15749 +
1694079071.5747247-CDS-S-dermatodea_contig1088:15642..157491694079071.5747247-CDS-S-dermatodea_contig1088:15642..15749Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 15643..15749 +
1622924178.1755285-CDS-S-dermatodea_contig1088:16514..166661622924178.1755285-CDS-S-dermatodea_contig1088:16514..16666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 16515..16666 +
1694079071.5870185-CDS-S-dermatodea_contig1088:16514..166661694079071.5870185-CDS-S-dermatodea_contig1088:16514..16666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 16515..16666 +
1622924178.194369-CDS-S-dermatodea_contig1088:17037..170391622924178.194369-CDS-S-dermatodea_contig1088:17037..17039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 17038..17039 +
1694079071.6007903-CDS-S-dermatodea_contig1088:17037..170391694079071.6007903-CDS-S-dermatodea_contig1088:17037..17039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 17038..17039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1088.588.1prot_S-dermatodea_contig1088.588.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1088 12532..17039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1088.588.1

>prot_S-dermatodea_contig1088.588.1 ID=prot_S-dermatodea_contig1088.588.1|Name=mRNA_S-dermatodea_contig1088.588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=459bp
MQPLSEQPGYAGPRQDGHRFGVNRIVRLGEDSLLSAGRDGVVRRWDVSGM
LSAKGSGVGRRDGGENGDEPSDAQPRCTGIFASHTDWVTGLAVAAGRIMA
SSSNDGTLKLWDLAGADRAVAGAAGAGDGEERYAGLGARFGGLGAVATEA
HPVGVANGAGGRSAAGLGNDGGGGGSATLDKNATPVGVAVKPAPSLRPSP
LATVAGHGDYVKCLTYAPEGGVLVSGGLDKRILLWDLQRMAAPLMALSTG
EEDGMGVDSPVRGAKHGVRPTASWGGEGPWFHLRDPSRVVLRPGVAAAGP
NEVFELCRQNKGSVYCVDASADAALVASGGTDRMIRLLDPRAGSGHAAKV
CKLDGHKDNVRCVRIDEGGLRVVSGSTDGTIRVWDVRQQCCLEVYELPGG
SVWAMQPSPSDFDVYYSGGRGRRVYRTDFRTGESKLVCMTNSEVLDMALE
LGEWVDMH*
back to top

mRNA from alignment at S-dermatodea_contig1088:12496..19090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1088.588.1 ID=mRNA_S-dermatodea_contig1088.588.1|Name=mRNA_S-dermatodea_contig1088.588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6595bp|location=Sequence derived from alignment at S-dermatodea_contig1088:12496..19090+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGCCCGCCAGAAAGCGGAGGCTGGTGACCTACTACATGCAGCCTCTTAG CGAGCAGCCAGGATACGCCGGGCCGCGGCAGGATGGCCACCGCTTCGGGG TGAACCGCATCGTGCGCCTCGGCGAGGACAGCTTGTTGTCCGCCGGCCGT GACGGGGTCGTTCGGCGCTGGGACGTCTCCGGGATGCTTTCGGCAAAAGG GTCGGGCGTCGGGCGACGAGACGGTGTGTGTTTGTTGCTGGGATGGGAGC ACGGGGGGGGGGAGGGGAGAGGCGGGAGGGGGAGGGGGGAGCTAGAGCGT GCCATCTTATTTTGCTGTCCAGGGGGCTCTGCTTTCGTCTTCGTACATAA TGTATTCAACCTTCTGCACATGTCTATTTTTTATGTATGTTATGTTACCA GTACATCGTGTGAAGTGCTCTTTGGATGGATTTTATCGGATCATGGATGT GGTATGTACCACAGCGACGACTACAGTACTTGTTCTTGGTGTCTCTTTTT GGGTGTTCGGCTCCCTTTTTGCTGCTGTGAACCATCTGTTCGGTGGTGTT GCGGGCGGCGGACGCTTCGCTATCTCGACTTTCGTCGCTGCCCCGTGTGA GGCGCTTTGCTTGGCTGGGAACGTGCTCGTAGGTTCTTGGACTTTTTGTA CTGTATGACGTAGCTTGTTCTCGCACGGCGTGGACATGATAGCCGACCAC GTGCCCCCTCAACATTTTTGAAGGAGTTCAGCAGTAGTATCAGGCATTGC CTCCTGCATAGGTTTATCATCCGATAAAGTGCAGGAGGGTAGCAAGTAGA ATGGGCTGTTCGCATCACCTTTTTGTTATTTTTCCCACGTCACCTTCACC TTGTTCGGCTGAAATGCAGCCGAGGGCACGAAGGAGGCCATCTACGTGAC TTTGATCGAGCAGAACATATTCTGGAGGGAGCAAACGTTCCGCTTATGGC CGCGGTGGAGAGACATGTCCACGGGCCGCTGTTGTGCGTGCCGACGGTTT CGCCTTTTCGCACAATGACGCCAATCTTCCAATCTGCGAATGTTGCTTAT CATATCATACTTGAGTAAGCTTACAAAATATTTACGTGCATACGCTCAAA ATAGACATTGCACCGCTGTTTGCTACCATACTATAAGATAACGCAAACGC GAAAGGACGGTGCCGCCCGGGTAGCAGAGAAGCGGCGCAGGAACAATTCA ACTCAGGCTGGACCATCCTCGGTCCCTGCTACGGTTGAAGTTGTGATATG CGTGTCGAAGCACGACCCGCGAGGGTGACGGCACGGCGTCCAGAAGTCGC CTCTTCTTTCGCAACAGAGCTGGCGACTCCACGACAACACCCCAGATGCC TTCATCACCACCAACACTGCAGGATCGAAGACAAGCGCTGCCGCCGCTAC AAAACCCGTATACGTTAGTTAAGGATGAACGCGATTCGTTCCTTCATCCC GAGACGCTTCAGGTATATTTTACGAAAACAACCCCCCCCCCGCCCCCACC CACCCCCGCCCCCTACCGCACGACTGACCGTTTACTTTGCCCATCTACGA CAGCAGCAGCAGCCGCAGCAACAGCAGGTGGGGAAAACGGAGACGAACCG AGCGATGCGCAGCCACGGTGCACGGGTATCTTCGCCTCGCACACTGACTG GGTCACGGGTCTCGCCGTAGCGGCTGGGCGCATCATGGCCTCCTCCTCCA ACGACGGCACCCTCAAGCTGTGGGATCTCGCCGGCGCGGATCGGGCCGTA GCCGGCGCGGCGGGAGCGGGAGACGGAGAGGAGCGATACGCGGGGCTTGG GGCACGGTTTGGGGGGCTCGGGGCGGTGGCGACGGAAGCGCACCCAGTCG GCGTGGCGAACGGTGCCGGGGGCAGGTCCGCGGCGGGGCTCGGCAACGAC GGGGGCGGCGGTGGGTCGGCAACCCTGGACAAGAACGCCACCCCGGTCGG TGTCGCGGTGAAACCCGCTCCCTCGCTCCGCCCCAGCCCGCTGGCGACGG TGGCGGGGCACGGGGACTACGTGAAATGTCTGACATACGCGCCGGAGGGG GGAGTCTTGGTGTCGGGAGGACTGGACAAACGCATACTCCTGTGGGACCT GCAGCGCATGGCGGCGCCGCTGATGGCCTTGAGCACGGGGGAGGAGGACG GGATGGGGGTGGACTCGCCGGTACGGGGGGCGAAGCATGGCGTTCGGCCG ACCGCGTCGTGGGGGGGGGAGGGCCCGTGGTTCCACCTACGGGACCCCTC GCGCGTGGTGCTGAGACCGGGGGTCGCGGCCGCCGGGCCGAACGAGGTGT TCGAGCTCTGCAGGCAAAACAAGGGGTCCGTGTACTGCGTGGACGCCTCG GCGGACGCGGCGCTGGTCGCGAGCGGTGGGACGGACCGTATGATCCGCCT CTTGGACCCGAGGGCCGGATCTGGGCACGCGGCGAAAGTTTGCAAGCTCG ACGGGCATAAGGATAACGTGCGCTGCGTGAGGATCGACGAGGGCGGCCTT CGCGTGGTGAGGGGGGTGGGGGAGTGGTGAACGCTGCTGTACGCTGTGTA TCTTTGTTGTGAGGCTCGGGTTTGTTTGCGTGTGGAGGTGCTGCGGTCGG GGGGGGGGGGGCTGAGGTTAGGAAGGCTACTTTGAACCCGACGCGACGTT CTCCTGTTTCTGAACGTGTGTGCTCAGCGATGGAAGATCGTGAGCGTACT CCTCCGGGCATCTCACTTACGATGTAAGAGTGTTCACGATTCTGCTTGCA AAGGAGAGAGAAGAGTTTGCTACTCACGATTATTGTCGGTGGTAGAGGGG ATGCACATCGCTCTTGCCTACGGTTCGGCGGTCGGTAGCACGGTGCGTAC CATGCCGTCGTTATCGCCAATGCAGACAGGGTTCAAGTGCCGCACCCCAT CGGTATGTGCTATTGTACTGTAGGTTTCCGAAGAACTCTCGATGCCCCGC AAAAACCTTGAAAACGTGACACGCACGCACTAAATGTAAAGAGAAAATTC CAGAGACTTCCTAAAAACATAGCACAATGTAGCCAACACAACCCTAGGCA TATCAAGCTTGAAATTGCGTTTGGGCGACCCTTCCTCAAAAATGACTGCG AGAGCGCCTTGATCTCGATCCCTCACACCCCCCGCCGCCCCCTTCAGGTG TCCGGGTCGACCGACGGCACAATACGAGTGTGGGACGTCCGCCAGCAGTG CTGCCTGGAGGTCTACGAGCTACCGGGAGGATCGGTTTGGGCCATGCAGC CCAGGTGAGACAAGAAGAGACGGTGCCCGTGCACGCAGCTCTCTGCAACT GGCCCGCCGCGGGAGCCGCAATGCTCGCACGTTTAGCACCTGTCAGTCTA CCACGCTCTTTCTCGCATCCCTGTCGGTCTTGGATTCGCCGTGTTTTCAT TTCTAGGGGGTTTTGCTTCTATTTTTTCCAGCGGTGGTCGTTAGATATTG GATGGACCGGTCGGTTGGTGTTTGACTGATCCCAGGCGCGTGGGGAGCTT GCTTATTAGACATGTGACACACGTGCGGCCTCTCCTCTCGAGGCGTGATT TATTTTTGCTGTTCATGAAGCGCATAGCTTCAAAGACAGCGCCCCGTCGG CCCCGGCACAACTTTGCGCAAGCACCACACGTACACGCCCCCGCGCCGAG ACGGGGAACGCCGAAGCCGTTGTTGGGCCAACCTGCTAAGTACGAGCGCT GCAACAGTGGCGTGGTTGCGGGGTACTCCGGTCTTGCGATTAGCGTTCTC GAAAGTTGGCTGCGGGGTGAGCGCACGGTTACTTGTCGTCAACGAGCCAT TCGACCTTGCCGTCGTGCCATATCGTGTTGACGCCGCTTCGCGCGGCTTT GTGGCGCGCAGGGGTCGGGGGGGGGGGGTTCCTCGCGCGGTGTGGTGTGG CGTGGCGTGGCAAGCCAACGCCTGAGCTCTGTGTTAACCTGCGTTTTGCT GCTGCTGCGATCGATTGCTGCCTCTTGTCGCCTCCGCCTCCGCCTCCGCC CCCGCCGCCTCGTGCACAGTCCGAGCGACTTCGATGTTTATTATAGCGGC GGCCGCGGGAGGCGGGTGTACCGCACAGATTTCCGCACGGGGGAGAGCAA GCTCGTGTGCATGACCAACTCCGAGGTGCTGGACATGGCGCTCGAGCTCG GTGAGTGGGTTGACATGCACTGTACCGAAGGTTTGATTGTGGGTACAAAG GCGGATCGTGGCTTATTTGCTTGTTTGGTGTGTGTGGAGCGCGGGGTTTG TGAGGCGCGCGCACTCAGCCGCGACAATACGCCACCGTGGCACGGCTAAT CGGATGCGGGCAGGGCCGACGAGCGTACAAACTAAACTTGCCAGGCATGT TCTCACTCGTAGTGCGTGCCCGTCTACTGATTTGGAGCATGACTACTACG GTCTTGTCTGCGGTGTTTTTTTCAATCGCCGGGTTCCATCTTAGCCTCTT TCACCCCCTCCCCGCCCGCATCGCCCTTCGGGTGCGCGTGATTGTGTCTC TTACGACGAAACGCGCCGCGATTCGATGGCACCCAGACCGAGGAACCAGC GGCCGTGAGCAATCGATGTCAATGTGGCTGTCCTCCACAGAGCCCGACAT CTCTCTGTGGGGCTGCAAGGACGGAGGGGGAGCTGCGCTTCGGACCGGCC GACCGACGGCCGGGACGGCGGAAAGTTCCGACGCTTCCCAGCACAGCCTC GAGGGAGAGGATGCCGGGCTGGACGAAGGGGCCTGCTTGCTGAGCGGTCC CGTGGAGACGATCCGTGGTCAGCCAGGGATTGTGAGACACGCGGTATTGA ATAACAGGTGAGGGGTGGGGGGCGAAAATGACGAGGAGCGGCCGTGAGTG ACGAACCTCGGTGCTCCTCGGGCTGACGGCGTGGCAGTTTGTCGCGCTTT GAAATAGATTGGCTGCGGTAGGTTCACGTGGTAGCTTGTTTTGCCGTTTC TCCGTGTGCGTTCCAGGGGGGGTGTACTGTTGTTAAACGCATGTCGTACT CAGGCGGGCATAGACCACGCGTCCCAACAATGCCAGGACGGAGCGATATG CCGGGTTATCGCCGGCCAGGCTGCGTTTCACAACGATGATACCAGCTACT GGTCATCACCCTTGCGTTTGCGACGCCACACGATATGCTATGGGTTGATT GGACATACCGGGTAACCAAATGTTGCACATTCAGTAAGCGTTACTATGAC TACTCCAAGAACCGCAAAGGGACTTTGAGCACCATGCGAATACAAAAAGC CCCGCATGCACACAATATACACGACGGTATATGTGTGATACACCCGGACT ATAATCTGCCCATGAGTACTCCTGGCGGAGTACCATTCACAAGTCAATAA TTGCTCTAGCGCGCTCCAGCAATCCAATGTTCACCAGGTGTCCTATAGGA TGTGATGGCGTTTCCACCCTTTGGGGAGAGACACAAGACTCTTCGACCGA AGTCTCCGAGCTCACAGGACATACTGCATGAACCACCCCATGCCCTATAA ATAGTAGTTTTATAGCTCCATGCCACAAGAGCCAACCCTACCTCGACCAA CCCCACCTCGAACCTCAAAGGCAGAGGAGGTGCGAGGGGGGTCCTTTGTA GGGTTCATTACAGGGGTAGGGCCCATCGGAGGATGGATCCGAACCCCTGC ATGAAGTCATTATTCGGATTTGTTGTTGTGTTTTAGGCGCGTCCTTAATG TACCGATTTTGCCCCCAAAACCAAAACTGAACGGCAGGCGACACGTCCTC ACGGAGGACGACGCGACCCCGCCAAACGTGGCCCTGTGGGACGTCACGAA GGCGAAGCAGATCGAAGCGTTCCCGCCGGGCACCGTCATGGAAGACAAGG AACGATCCCTCCGGGAGATCATAGCCGTGCGGCCGTGGTTCACCATAGGC ACGCACCTCGGCACGCCGCTCGTGTCTCTCTCCGAGAGCACGGTATTCGA CGGGGAGCTCTACGCTGTAGACGCCAGGGGAGAGCGGCAGACCTTCCTTG CATCCCCGCCGCCGTCGCCCCCTCGAAATTCGTCTTCAGACCCCCCCCCC GGCGTTTCTACTGCGGCGACTGAGGGAAACACGGCTAGGGCGGCGGGCGT GAGCAAGGGTAGGGACGGGCCTGTGCGGGTAGCTAAGGCGCGCTCGGTGC AGGACGAAGTGAAGGTGCGGCGGGTTGGCTTCGATGGGTTAGGATTATGC GCCTAGGGTTCTGGATGTGTGAGGAGTAGGTGGTTTTACGCGTAGCCCTG GTGTTGCGGGCGTTACGTTGGGTCAGGAGTGATTGTGTGATGCTTTCCCC CCGGATGCAATAAGCTTGGTTAAATGCATTGGGTGGGGGCGGTTGAACAA TCGCGACCCTCACCCCTTCCAAGCAAACCGAACCCGTTCGATTGACCGGC CGGCTTTGATTACGGACTGTTCTATTTTTTTTCGCCGGCCTTCCGTGGCC CGTCGACTACTTTTCTCAAAAGTCAAAACCTCGTCCTCAACCCGGCCACT CCCCACCGGCCCCGCAGGTTAACCTAGGCGACGCCGTCCTTCGAGGCTTG TTCTCTAAATGGATAGAGCAGCACCTCCGACTGGACGGTGATGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1088:12496..19090+

>mRNA_S-dermatodea_contig1088.588.1 ID=mRNA_S-dermatodea_contig1088.588.1|Name=mRNA_S-dermatodea_contig1088.588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2754bp|location=Sequence derived from alignment at S-dermatodea_contig1088:12496..19090+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGCCTCTTAGCGAGCAGCCAGGATACGCCGGGCCGCGGCAGGATGG
CCACCGCTTCGGGGTGAACCGCATCGTGCGCCTCGGCGAGGACAGCTTGT
TGTCCGCCGGCCGTGACGGGGTCGTTCGGCGCTGGGACGTCTCCGGGATG
CTTTCGGCAAAAGGGTCGGGCGTCGGGCGACGAGACGATGCAGCCTCTTA
GCGAGCAGCCAGGATACGCCGGGCCGCGGCAGGATGGCCACCGCTTCGGG
GTGAACCGCATCGTGCGCCTCGGCGAGGACAGCTTGTTGTCCGCCGGCCG
TGACGGGGTCGTTCGGCGCTGGGACGTCTCCGGGATGCTTTCGGCAAAAG
GGTCGGGCGTCGGGCGACGAGACGGTGGGGAAAACGGAGACGAACCGAGC
GATGCGCAGCCACGGTGCACGGGTATCTTCGCCTCGCACACTGACTGGGT
CACGGGTCTCGCCGTAGCGGCTGGGCGCATCATGGCCTCCTCCTCCAACG
ACGGCACCCTCAAGCTGTGGGATCTCGCCGGCGCGGATCGGGCCGTAGCC
GGCGCGGCGGGAGCGGGAGACGGAGAGGAGCGATACGCGGGGCTTGGGGC
ACGGTTTGGGGGGCTCGGGGCGGTGGCGACGGAAGCGCACCCAGTCGGCG
TGGCGAACGGTGCCGGGGGCAGGTCCGCGGCGGGGCTCGGCAACGACGGG
GGCGGCGGTGGGTCGGCAACCCTGGACAAGAACGCCACCCCGGTCGGTGT
CGCGGTGAAACCCGCTCCCTCGCTCCGCCCCAGCCCGCTGGCGACGGTGG
CGGGGCACGGGGACTACGTGAAATGTCTGACATACGCGCCGGAGGGGGGA
GTCTTGGTGTCGGGAGGACTGGACAAACGCATACTCCTGTGGGACCTGCA
GCGCATGGCGGCGCCGCTGATGGCCTTGAGCACGGGGGAGGAGGACGGGA
TGGGGGTGGACTCGCCGGTACGGGGGGCGAAGCATGGCGTTCGGCCGACC
GCGTCGTGGGGGGGGGAGGGCCCGTGGTTCCACCTACGGGACCCCTCGCG
CGTGGTGCTGAGACCGGGGGTCGCGGCCGCCGGGCCGAACGAGGTGTTCG
AGCTCTGCAGGCAAAACAAGGGGTCCGTGTACTGCGTGGACGCCTCGGCG
GACGCGGCGCTGGTCGCGAGCGGTGGGACGGACCGTATGATCCGCCTCTT
GGACCCGAGGGCCGGATCTGGGCACGCGGCGAAAGTTTGCAAGCTCGACG
GGCATAAGGATAACGTGCGCTGCGTGAGGATCGACGAGGGCGGCCTTCGC
GTGGTGGGGAAAACGGAGACGAACCGAGCGATGCGCAGCCACGGTGCACG
GGTATCTTCGCCTCGCACACTGACTGGGTCACGGGTCTCGCCGTAGCGGC
TGGGCGCATCATGGCCTCCTCCTCCAACGACGGCACCCTCAAGCTGTGGG
ATCTCGCCGGCGCGGATCGGGCCGTAGCCGGCGCGGCGGGAGCGGGAGAC
GGAGAGGAGCGATACGCGGGGCTTGGGGCACGGTTTGGGGGGCTCGGGGC
GGTGGCGACGGAAGCGCACCCAGTCGGCGTGGCGAACGGTGCCGGGGGCA
GGTCCGCGGCGGGGCTCGGCAACGACGGGGGCGGCGGTGGGTCGGCAACC
CTGGACAAGAACGCCACCCCGGTCGGTGTCGCGGTGAAACCCGCTCCCTC
GCTCCGCCCCAGCCCGCTGGCGACGGTGGCGGGGCACGGGGACTACGTGA
AATGTCTGACATACGCGCCGGAGGGGGGAGTCTTGGTGTCGGGAGGACTG
GACAAACGCATACTCCTGTGGGACCTGCAGCGCATGGCGGCGCCGCTGAT
GGCCTTGAGCACGGGGGAGGAGGACGGGATGGGGGTGGACTCGCCGGTAC
GGGGGGCGAAGCATGGCGTTCGGCCGACCGCGTCGTGGGGGGGGGAGGGC
CCGTGGTTCCACCTACGGGACCCCTCGCGCGTGGTGCTGAGACCGGGGGT
CGCGGCCGCCGGGCCGAACGAGGTGTTCGAGCTCTGCAGGCAAAACAAGG
GGTCCGTGTACTGCGTGGACGCCTCGGCGGACGCGGCGCTGGTCGCGAGC
GGTGGGACGGACCGTATGATCCGCCTCTTGGACCCGAGGGCCGGATCTGG
GCACGCGGCGAAAGTTTGCAAGCTCGACGGGCATAAGGATAACGTGCGCT
GCGTGAGGATCGACGAGGGCGGCCTTCGCGTGGTGTCCGGGTCGACCGAC
GGCACAATACGAGTGTGGGACGTCCGCCAGCAGTGCTGCCTGGAGGTCTA
CGAGCTACCGGGAGGATCGGTTTGGGCCATGCAGCCCAGGTGTCCGGGTC
GACCGACGGCACAATACGAGTGTGGGACGTCCGCCAGCAGTGCTGCCTGG
AGGTCTACGAGCTACCGGGAGGATCGGTTTGGGCCATGCAGCCCAGTCCG
AGCGACTTCGATGTTTATTATAGCGGCGGCCGCGGGAGGCGGGTGTACCG
CACAGATTTCCGCACGGGGGAGAGCAAGCTCGTGTGCATGACCAACTCCG
AGGTGCTGGACATGGCGCTCGAGCTCGGTGAGTGGGTTGACATGCACTTC
CGAGCGACTTCGATGTTTATTATAGCGGCGGCCGCGGGAGGCGGGTGTAC
CGCACAGATTTCCGCACGGGGGAGAGCAAGCTCGTGTGCATGACCAACTC
CGAGGTGCTGGACATGGCGCTCGAGCTCGGTGAGTGGGTTGACATGCACT
GAGA
back to top