mRNA_S-dermatodea_contig10878.585.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10878.585.1
Unique NamemRNA_S-dermatodea_contig10878.585.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10878.585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10878contigS-dermatodea_contig10878:2387..2863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size477
Cds size114
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924177.9420233-UTR-S-dermatodea_contig10878:2386..27491622924177.9420233-UTR-S-dermatodea_contig10878:2386..2749Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10878 2387..2749 +
1694079071.3671627-UTR-S-dermatodea_contig10878:2386..27491694079071.3671627-UTR-S-dermatodea_contig10878:2386..2749Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10878 2387..2749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924177.952568-CDS-S-dermatodea_contig10878:2749..28631622924177.952568-CDS-S-dermatodea_contig10878:2749..2863Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10878 2750..2863 +
1694079071.3750024-CDS-S-dermatodea_contig10878:2749..28631694079071.3750024-CDS-S-dermatodea_contig10878:2749..2863Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10878 2750..2863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10878.585.1prot_S-dermatodea_contig10878.585.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10878 2750..2863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10878.585.1

>prot_S-dermatodea_contig10878.585.1 ID=prot_S-dermatodea_contig10878.585.1|Name=mRNA_S-dermatodea_contig10878.585.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
MDVILGLLGICGANCAEDRDDVKARAGEVVSFAFKSF*
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mRNA from alignment at S-dermatodea_contig10878:2387..2863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10878.585.1 ID=mRNA_S-dermatodea_contig10878.585.1|Name=mRNA_S-dermatodea_contig10878.585.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at S-dermatodea_contig10878:2387..2863+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCATTCATCATAAAACACACGAAGCCTGCATAATCTCACTCTTTAGCGC
GTCTACGTCCTCGTGCACCAGCGGAAGGGAGTGGCCTATTGAGAGCAACA
GGGCGAGAGCATACACCCTCACCAGTCAACCCAACGCGGAGAGCACGCTA
GCCAGGCTTTGCTGCTTGTCCACAGCAGCAAGCACGTCTATTCAGGCTTC
CGAGACTGCTGGAAATACAGAGAGGGGGCGGTTGAGTTATTTTTTTGGTT
CGTCGCGCCAGCCACCGTCACGCTGAGGCACGGACGCCAGCATACCACTT
AGCTGATCAGATAGCGCCCGGAGCCCATCTCCTTGAGACGGAGGGGCAGG
AGGTGGGGTGATCATGGACGTGATCCTGGGGCTGTTGGGCATTTGCGGGG
CGAACTGCGCGGAGGACCGCGATGACGTGAAGGCGCGGGCTGGGGAGGTG
GTGAGTTTTGCGTTCAAGAGTTTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10878:2387..2863+

>mRNA_S-dermatodea_contig10878.585.1 ID=mRNA_S-dermatodea_contig10878.585.1|Name=mRNA_S-dermatodea_contig10878.585.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig10878:2387..2863+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGTGATCCTGGGGCTGTTGGGCATTTGCGGGGCGAACTGCGCGGA
GGACCGCGATGACGTGAAGGCGCGGGCTGGGGAGGTGGTGAGTTTTGCGT
TCAAGAGTTTCTGAATGGACGTGATCCTGGGGCTGTTGGGCATTTGCGGG
GCGAACTGCGCGGAGGACCGCGATGACGTGAAGGCGCGGGCTGGGGAGGT
GGTGAGTTTTGCGTTCAAGAGTTTCTGA
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