mRNA_S-dermatodea_contig10877.582.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10877.582.1
Unique NamemRNA_S-dermatodea_contig10877.582.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10877.582.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.010e-47
Identity = 99/200 (49.50%), Postives = 123/200 (61.50%), Query Frame = 1 
Query:    4 QVKEISYAFPTDHEDTGCLSVVCRLTLDVLGFPACTSSSVTSRVGISNAQRGENPLAFRSDSFSQP-AVTGEPAA-----TFTVSLRDSGAADFLVPERRYEESVRREWRIGERVVTEYKEETXXXXXXXXXXXXXXGCGLTSFYGVVSKIARNQSGS---------EMWANSPWDCLSIKWDYDGTTTSLGPWEPRPVS 558
            QVKE+S+ FP D E+ G  SVVCRL+L+VLGFP   SSSV +R  ++ A RG+NPLA+R DSF+ P A  G  +A     TF+VSLRD G ADFLV ERRY ESV R WR  ERV+ E+KE                   L  ++GV+ ++    +G            W NSPWDCLSI+WD D T +SLGPWEPRPV+
Sbjct: 1347 QVKEMSFVFPKDTEEVGNHSVVCRLSLEVLGFPVRVSSSVVARTALNQASRGDNPLAYREDSFAPPPAEDGGGSAEAHSQTFSVSLRDCGEADFLVSERRYNESVGRNWRPSERVMMEWKEGEDGEEGEGV---------LKPYFGVMVRLGMAGAGGAGGAQSSSRNDWPNSPWDCLSIRWDLDNTISSLGPWEPRPVT 1537
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BLAST of mRNA_S-dermatodea_contig10877.582.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.450e-46
Identity = 98/199 (49.25%), Postives = 120/199 (60.30%), Query Frame = 1 
Query:    7 VKEISYAFPTDHEDTGCLSVVCRLTLDVLGFPACTSSSVTSRVGISNAQRGENPLAFRSDSFSQPAVT--GEPAA----TFTVSLRDSGAADFLVPERRYEESVRREWRIGERVVTEYKEETXXXXXXXXXXXXXXGCGLTSFYGVVSKIARNQSGS---------EMWANSPWDCLSIKWDYDGTTTSLGPWEPRPVS 558
            VKE+S+ FP D E+ G  SVVCRL+L+VLGFP   SSSV +R  ++ A RG+NPLA+R DSF+ P     G+ A     TF+VSLRD G ADFLV ERRY +SV R WR  ERV+ E+KE                   L  ++G V KI    +G            W NSPWDCLSI+WD D T +SLGPWEPRPV+
Sbjct: 1307 VKEMSFVFPKDTEEVGNHSVVCRLSLEVLGFPVRVSSSVVTRTALNQASRGDNPLAYREDSFAPPPTEEGGDSAEAHSQTFSVSLRDCGEADFLVSERRYNKSVGRNWRPSERVMMEWKEGEDGEDGEGV---------LKPYFGAVVKIGMAGAGGGGGTQPLSRNDWPNSPWDCLSIRWDLDNTISSLGPWEPRPVT 1496
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10877.582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEP1_ECTSI3.010e-4749.50WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KTA2_9PHAE1.450e-4649.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10877contigS-dermatodea_contig10877:152..709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue7.2e-42
Seed eggNOG ortholog2880.D8LEP1
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
Ec32 ortholog descriptionWD40 and bromodomain protein
Ec32 orthologEc-26_000610.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size558
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924177.8273516-CDS-S-dermatodea_contig10877:151..7091622924177.8273516-CDS-S-dermatodea_contig10877:151..709Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10877 152..709 +
1694079071.310773-CDS-S-dermatodea_contig10877:151..7091694079071.310773-CDS-S-dermatodea_contig10877:151..709Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10877 152..709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10877.582.1prot_S-dermatodea_contig10877.582.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10877 152..709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10877.582.1

>prot_S-dermatodea_contig10877.582.1 ID=prot_S-dermatodea_contig10877.582.1|Name=mRNA_S-dermatodea_contig10877.582.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=186bp
MQVKEISYAFPTDHEDTGCLSVVCRLTLDVLGFPACTSSSVTSRVGISNA
QRGENPLAFRSDSFSQPAVTGEPAATFTVSLRDSGAADFLVPERRYEESV
RREWRIGERVVTEYKEETEEDEEGGGAAAAGGGCGLTSFYGVVSKIARNQ
SGSEMWANSPWDCLSIKWDYDGTTTSLGPWEPRPVS
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mRNA from alignment at S-dermatodea_contig10877:152..709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10877.582.1 ID=mRNA_S-dermatodea_contig10877.582.1|Name=mRNA_S-dermatodea_contig10877.582.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig10877:152..709+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTGAAAGAAATCTCGTACGCCTTCCCGACAGACCACGAGGACAC
CGGCTGCCTCTCCGTTGTCTGCCGCCTCACCCTCGACGTGCTCGGCTTCC
CGGCGTGCACGAGCTCCTCCGTCACGAGCCGCGTTGGGATTTCCAACGCC
CAGCGCGGCGAGAATCCGCTGGCCTTCCGCTCGGACTCGTTCAGCCAGCC
GGCGGTCACCGGAGAGCCGGCGGCCACCTTCACGGTCAGCCTCCGAGACT
CAGGCGCCGCGGATTTCCTTGTGCCCGAGAGGCGTTACGAGGAGTCGGTT
CGCAGGGAGTGGCGGATAGGAGAGCGTGTCGTGACGGAGTACAAGGAGGA
AACGGAGGAGGACGAAGAGGGGGGCGGGGCTGCTGCCGCGGGCGGCGGTT
GCGGGCTGACGTCTTTTTACGGGGTGGTGTCGAAGATCGCGAGGAATCAG
TCCGGTAGCGAGATGTGGGCGAACTCGCCGTGGGATTGCCTGAGCATCAA
GTGGGACTACGACGGGACTACGACGTCGCTGGGGCCGTGGGAGCCGAGGC
CGGTGAGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10877:152..709+

>mRNA_S-dermatodea_contig10877.582.1 ID=mRNA_S-dermatodea_contig10877.582.1|Name=mRNA_S-dermatodea_contig10877.582.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at S-dermatodea_contig10877:152..709+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTGAAAGAAATCTCGTACGCCTTCCCGACAGACCACGAGGACAC
CGGCTGCCTCTCCGTTGTCTGCCGCCTCACCCTCGACGTGCTCGGCTTCC
CGGCGTGCACGAGCTCCTCCGTCACGAGCCGCGTTGGGATTTCCAACGCC
CAGCGCGGCGAGAATCCGCTGGCCTTCCGCTCGGACTCGTTCAGCCAGCC
GGCGGTCACCGGAGAGCCGGCGGCCACCTTCACGGTCAGCCTCCGAGACT
CAGGCGCCGCGGATTTCCTTGTGCCCGAGAGGCGTTACGAGGAGTCGGTT
CGCAGGGAGTGGCGGATAGGAGAGCGTGTCGTGACGGAGTACAAGGAGGA
AACGGAGGAGGACGAAGAGGGGGGCGGGGCTGCTGCCGCGGGCGGCGGTT
GCGGGCTGACGTCTTTTTACGGGGTGGTGTCGAAGATCGCGAGGAATCAG
TCCGGTAGCGAGATGTGGGCGAACTCGCCGTGGGATTGCCTGAGCATCAA
GTGGGACTACGACGGGACTACGACGTCGCTGGGGCCGTGGGAGCCGAGGC
CGGTGAGTATGCAGGTGAAAGAAATCTCGTACGCCTTCCCGACAGACCAC
GAGGACACCGGCTGCCTCTCCGTTGTCTGCCGCCTCACCCTCGACGTGCT
CGGCTTCCCGGCGTGCACGAGCTCCTCCGTCACGAGCCGCGTTGGGATTT
CCAACGCCCAGCGCGGCGAGAATCCGCTGGCCTTCCGCTCGGACTCGTTC
AGCCAGCCGGCGGTCACCGGAGAGCCGGCGGCCACCTTCACGGTCAGCCT
CCGAGACTCAGGCGCCGCGGATTTCCTTGTGCCCGAGAGGCGTTACGAGG
AGTCGGTTCGCAGGGAGTGGCGGATAGGAGAGCGTGTCGTGACGGAGTAC
AAGGAGGAAACGGAGGAGGACGAAGAGGGGGGCGGGGCTGCTGCCGCGGG
CGGCGGTTGCGGGCTGACGTCTTTTTACGGGGTGGTGTCGAAGATCGCGA
GGAATCAGTCCGGTAGCGAGATGTGGGCGAACTCGCCGTGGGATTGCCTG
AGCATCAAGTGGGACTACGACGGGACTACGACGTCGCTGGGGCCGTGGGA
GCCGAGGCCGGTGAGT
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