mRNA_S-dermatodea_contig10861.577.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10861.577.1
Unique NamemRNA_S-dermatodea_contig10861.577.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: D8LJS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.440e-26
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:    1 MADVKDKEKVPVTEVLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTRAGAAATAGQAK 237
            M+DVK +EKVPV EVLEEDDEFEEFAEANWDE+AEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKT+  A    GQAK
Sbjct:    1 MSDVKVEEKVPVAEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTKPPAT---GQAK 76
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: A0A7S2CP29_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP29_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.020e-13
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 MADVKDKEKVPVTEVLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAEL 192
            +A  ++K + P  EVLEEDDEFEEFAE NWD+SAED ED  QW++D        DF NQLRAEL
Sbjct:   15 VAPAEEKPEAPKLEVLEEDDEFEEFAEKNWDKSAEDGEDAAQWEEDWDDGELDDDFTNQLRAEL 78
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: A0A7S1ZHX0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHX0_TRICV)

HSP 1 Score: 58.2 bits (139), Expect = 3.550e-9
Identity = 32/60 (53.33%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:   31 PVTEVLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTRAG 210
            P+TE +EEDDEFEEF    WD   ED ED QQWQD+        DF   LRAEL K   G
Sbjct:   38 PITEAIEEDDEFEEFEPCRWDAHDEDAEDAQQWQDNWDDDDIEDDFTKNLRAELTKNSEG 97
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: A0A7S4EAY6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAY6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.240e-9
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   31 PVTEVLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            P  EV EEDDEFEEFA+ NWD +AED ED + WQDDX       DFC  LR EL+K
Sbjct:  119 PDYEVYEEDDEFEEFAQDNWDAAAEDAEDPKLWQDDXDDDDVDDDFCRHLREELQK 174
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: A0A8J5X4N4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4N4_DIALT)

HSP 1 Score: 55.1 bits (131), Expect = 2.570e-8
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 MADVKDKEKVPVTEVLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            MAD K +E +   ++LEEDDEFEEF   +WD +AED ED Q WQDD        DF  QLRAEL K
Sbjct:    1 MADQKKEEDL---DMLEEDDEFEEFEAESWDLTAEDAEDQQLWQDDWDEDDAKNDFTQQLRAELAK 63
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: I1CD22_RHIO9 (26S proteasome complex subunit DSS1 n=2 Tax=Rhizopus TaxID=4842 RepID=I1CD22_RHIO9)

HSP 1 Score: 52.8 bits (125), Expect = 3.260e-7
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   43 VLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            VLEEDDEFEEFA  +W E  EDQ D   W+D+        DF  QLRAELEK
Sbjct:   24 VLEEDDEFEEFAAEDWGEEEEDQNDAHFWEDNWDDDDIEDDFSKQLRAELEK 75
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: A0A0U2T7H1_9MAXI (Putative 26S proteasome complex subunit DSS1 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2T7H1_9MAXI)

HSP 1 Score: 51.2 bits (121), Expect = 8.830e-7
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   43 VLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELE 195
            +LEEDDEFEEF + +WD   EDQ D++ W+D+        DFCNQLR  LE
Sbjct:   10 LLEEDDEFEEFEQEDWDIRREDQTDIKVWEDNWDNDDLESDFCNQLRKVLE 60
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: A0A0D2WWT7_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WWT7_CAPO3)

HSP 1 Score: 51.2 bits (121), Expect = 1.140e-6
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   13 KDKEKVPVT---EVLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTRA 207
            KD ++ P T   ++LEEDDEFEEF +  W+ SAED+ D Q W+D+        DF  QLRAEL ++ A
Sbjct:    9 KDAKQEPATANVDLLEEDDEFEEFPQEEWNGSAEDKTDQQLWEDNWDDDAAEDDFAKQLRAELSQSTA 76
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: UPI00077AF97D (26S proteasome complex subunit DSS1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AF97D)

HSP 1 Score: 48.9 bits (115), Expect = 8.390e-6
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   43 VLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            +LEEDDEFEEFA   W    EDQ D+  W+D+        DF +QLRAELEK
Sbjct:   11 LLEEDDEFEEFAAEEWTVVDEDQTDIHVWEDNWDDDTVEDDFSHQLRAELEK 62
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BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Match: UPI0006B09B7F (26S proteasome complex subunit SEM1-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B09B7F)

HSP 1 Score: 48.1 bits (113), Expect = 1.720e-5
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   43 VLEEDDEFEEFAEANWDESAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEK 198
            +LEEDDEFEEF   +W   AED ED+  W+D+        DF  QLR ELEK
Sbjct:   11 LLEEDDEFEEFPAEDWTGKAEDDEDVNVWEDNWDDDNIEDDFSKQLREELEK 62
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10861.577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LJS1_ECTSI1.440e-2684.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CP29_9STRA7.020e-1359.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1ZHX0_TRICV3.550e-953.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4EAY6_9STRA4.240e-960.71Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A8J5X4N4_DIALT2.570e-854.55Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
I1CD22_RHIO93.260e-757.6926S proteasome complex subunit DSS1 n=2 Tax=Rhizop... [more]
A0A0U2T7H1_9MAXI8.830e-752.94Putative 26S proteasome complex subunit DSS1 n=1 T... [more]
A0A0D2WWT7_CAPO31.140e-647.06Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
UPI00077AF97D8.390e-653.8526S proteasome complex subunit DSS1-like n=1 Tax=A... [more]
UPI0006B09B7F1.720e-551.9226S proteasome complex subunit SEM1-like n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10861contigS-dermatodea_contig10861:3211..4996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDSS1/SEM1
Ec32 orthologEc-12_003050.1
Exons3
Model size249
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10861.577.1prot_S-dermatodea_contig10861.577.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10861 3211..4996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924177.2851303-CDS-S-dermatodea_contig10861:3210..33271622924177.2851303-CDS-S-dermatodea_contig10861:3210..3327Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10861 3211..3327 -
1694079070.8943884-CDS-S-dermatodea_contig10861:3210..33271694079070.8943884-CDS-S-dermatodea_contig10861:3210..3327Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10861 3211..3327 -
1622924177.2950244-CDS-S-dermatodea_contig10861:3799..38621622924177.2950244-CDS-S-dermatodea_contig10861:3799..3862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10861 3800..3862 -
1694079070.9024014-CDS-S-dermatodea_contig10861:3799..38621694079070.9024014-CDS-S-dermatodea_contig10861:3799..3862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10861 3800..3862 -
1622924177.3062344-CDS-S-dermatodea_contig10861:4927..49961622924177.3062344-CDS-S-dermatodea_contig10861:4927..4996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10861 4928..4996 -
1694079070.9102588-CDS-S-dermatodea_contig10861:4927..49961694079070.9102588-CDS-S-dermatodea_contig10861:4927..4996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10861 4928..4996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10861.577.1

>prot_S-dermatodea_contig10861.577.1 ID=prot_S-dermatodea_contig10861.577.1|Name=mRNA_S-dermatodea_contig10861.577.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
MADVKDKEKVPVTEVLEEDDEFEEFAEANWDESAEDQEDLQQWQDDWDDD
DMDDDFCNQLRAELEKTRAGAAATAGQAKTKS*
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mRNA from alignment at S-dermatodea_contig10861:3211..4996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10861.577.1 ID=mRNA_S-dermatodea_contig10861.577.1|Name=mRNA_S-dermatodea_contig10861.577.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1786bp|location=Sequence derived from alignment at S-dermatodea_contig10861:3211..4996- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGACGTCAAGGATAAGGAGAAGGTGCCCGTGACGGAGGTGCTCGA
GGAGGACGACGAGTTCGAGGTGAGAATGGCACGCTCACCACTGTTCCATT
CATGTGCAAATGCCTGCTGCAGTCTCCTGCACCCGGATTCAAAACTCCTT
TAGTCTCGTAGCACAGGGAGTACTTCTATTGGACTTCAGACTTGTCATGT
CTGTGGAGTTCGGCTTTGTTGAGTGCAAGGTCTACAGAGCTATCATACAG
AGTATTAATATTTACCAGCTTATGTTGTACCATGCTGTACTGTATGCATA
TATGTATGTGGTTTCATAGATGCGAAGCTGTGTTTGAGAGTGTTTGGCCA
AAAAGCCTCGATAGTGGTTACATCACCCATACCCTCGCTTTGGTCCCAGC
GCACGTCGAGAGCTAGCGGCGAACGTTATGTGGGATCGTGTTGCTGAAAT
GAGAGGATTGTGTCGCACTGACTACAATACAGTATTACTACAATAGTTTA
CTTGTACACTTGCATTGTACGAGTAAATACACGTCATAGGTCATAGGTCG
TCTGCTGGTCCGATTGTCGTGTATCTCCGAGAGGATGGGCTGATCGGAGT
GCTACAGTTTTTTTGTATAATGTTATGTTGCAAGATGATGGGGGGATGAG
GCACACACCGCGATAAGGATACATGCTGGCGTGTAAGACCGAAGACTGCT
GTAGCGATACGCGCACAACTCACGGGCTGGCGTCCTGCTCTGGCGCTTAG
ATTCGAGCAACTCGTGAGCAGGCGCTTTGCAAACCAGCCGTAATCACACG
CCATTAATGACGCTCCTGATGGATCATGCCGAGGTTGTGTTGCTGGTTCA
TCGAGTTTGGAGTCAGAGAGAGCGCCACGATGGAGTAGATCACCATTAAT
ACAGCAGACACCCTGCCGCCCTCTGGTTTTCATCACGGCCAGACCTTACC
GGGCGCCCAACATGCAAGACGAGTGTTCGCCGCATCTAAAACGTTAATGT
TTGGTAGCCGCGTGAAGTCGTTGCCTTCGTTATAACACATCAGTATGTGT
ACGATGTATTACATCGGTACTTGTACGATAAATTAGTTGTGAGATCCCGT
TTCATCATACACGCCCGTTTTGGTTTGGGCGCAGGAGTTTGCGGAGGCGA
ATTGGGATGAGTCTGCCGAGGACCAAGAGGACCTTCAGCAGTGGCAGGTG
AATTGAGCATAAGCACACAAGCGTGGAACAAACAGACAGCAGCTCAACCC
GTAGTCAGCGATAAAAACGCACACTATTTAAGTACAATGTTAGGCCCGTG
AAGATGCGTGCGGATACGTAAGGCTCCGGTAGACAAGAATGGACGCTCGT
GTCGTGCAGTACTTGGCCGCGGGAGGCTGGCTGATTCAAAATGCGCTCGT
GTGCCCCACGCCGATCTCGACGCCTCGCTGTTTAGCACAGTGAAGATGTT
TTCTGGAAACCCACGTGCATGTGCGGTCTTGTTTGAAACATGTCGTATGT
GTTAGAGCAACAGAGCAAACCAAATACAGGGTGCACCGTCATAGACCCAA
CCACGAACTACCGCTCGTCCCCGCGCGTACAAGATTGTCGTGTCCTATAT
TAACCTTACAGTATTATACTTGCACCTCTCCTTCGTTCGTGTTGTGAACC
CCACTCCCTCTGCGAAAAGGATGACTGGGATGACGATGACATGGACGACG
ACTTCTGCAACCAGCTGAGGGCGGAGCTGGAGAAGACTAGGGCAGGGGCG
GCGGCAACAGCAGGCCAAGCGAAAACCAAGTCATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10861:3211..4996-

>mRNA_S-dermatodea_contig10861.577.1 ID=mRNA_S-dermatodea_contig10861.577.1|Name=mRNA_S-dermatodea_contig10861.577.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig10861:3211..4996- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGACGTCAAGGATAAGGAGAAGGTGCCCGTGACGGAGGTGCTCGA
GGAGGACGACGAGTTCGAGATGGCGGACGTCAAGGATAAGGAGAAGGTGC
CCGTGACGGAGGTGCTCGAGGAGGACGACGAGTTCGAGGAGTTTGCGGAG
GCGAATTGGGATGAGTCTGCCGAGGACCAAGAGGACCTTCAGCAGTGGCA
GGAGTTTGCGGAGGCGAATTGGGATGAGTCTGCCGAGGACCAAGAGGACC
TTCAGCAGTGGCAGGATGACTGGGATGACGATGACATGGACGACGACTTC
TGCAACCAGCTGAGGGCGGAGCTGGAGAAGACTAGGGCAGGGGCGGCGGC
AACAGCAGGCCAAGCGAAAACCAAGTCATGAGATGACTGGGATGACGATG
ACATGGACGACGACTTCTGCAACCAGCTGAGGGCGGAGCTGGAGAAGACT
AGGGCAGGGGCGGCGGCAACAGCAGGCCAAGCGAAAACCAAGTCATGA
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