mRNA_S-dermatodea_contig10845.573.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10845.573.1
Unique NamemRNA_S-dermatodea_contig10845.573.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10845.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10845contigS-dermatodea_contig10845:300..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size397
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10845.573.1prot_S-dermatodea_contig10845.573.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10845 307..663 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924176.8136806-UTR-S-dermatodea_contig10845:299..3061622924176.8136806-UTR-S-dermatodea_contig10845:299..306Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10845 300..306 +
1694079070.534863-UTR-S-dermatodea_contig10845:299..3061694079070.534863-UTR-S-dermatodea_contig10845:299..306Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10845 300..306 +
1622924176.8387327-UTR-S-dermatodea_contig10845:663..6961622924176.8387327-UTR-S-dermatodea_contig10845:663..696Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10845 664..696 +
1694079070.5513828-UTR-S-dermatodea_contig10845:663..6961694079070.5513828-UTR-S-dermatodea_contig10845:663..696Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10845 664..696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924176.8242345-CDS-S-dermatodea_contig10845:306..6631622924176.8242345-CDS-S-dermatodea_contig10845:306..663Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10845 307..663 +
1694079070.5432878-CDS-S-dermatodea_contig10845:306..6631694079070.5432878-CDS-S-dermatodea_contig10845:306..663Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10845 307..663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10845.573.1

>prot_S-dermatodea_contig10845.573.1 ID=prot_S-dermatodea_contig10845.573.1|Name=mRNA_S-dermatodea_contig10845.573.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
METMGGVVSGIVPCHCCLCSAGGERGGCVMGRLWRVEVLFKCEADDPLDS
RTRAGRRRGWQKVLTFLHAIRSVVRVVALCVVVRSKYYAYYTLFALNDII
LSFFLWRRIHYHVSRYDT*
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mRNA from alignment at S-dermatodea_contig10845:300..696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10845.573.1 ID=mRNA_S-dermatodea_contig10845.573.1|Name=mRNA_S-dermatodea_contig10845.573.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=397bp|location=Sequence derived from alignment at S-dermatodea_contig10845:300..696+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTATATATGGAGACGATGGGGGGGGTTGTGTCGGGTATTGTACCCTGTC
ATTGCTGTTTATGTTCAGCGGGAGGGGAGAGAGGAGGGTGCGTGATGGGG
AGACTTTGGAGAGTTGAGGTGCTTTTTAAGTGTGAGGCTGATGATCCGCT
CGACTCTCGGACGCGAGCTGGCAGAAGAAGAGGGTGGCAAAAAGTTTTGA
CGTTTTTGCATGCGATTCGTTCGGTGGTACGAGTTGTTGCTTTATGTGTG
GTGGTTAGATCAAAATATTATGCCTACTATACTCTCTTTGCTCTTAATGA
TATTATTTTGAGTTTTTTTTTGTGGCGAAGGATTCATTATCACGTATCTC
GGTATGACACCTAGGAGAGAAAGTTGGCACGGCAAAGCAAAGAAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10845:300..696+

>mRNA_S-dermatodea_contig10845.573.1 ID=mRNA_S-dermatodea_contig10845.573.1|Name=mRNA_S-dermatodea_contig10845.573.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig10845:300..696+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGACGATGGGGGGGGTTGTGTCGGGTATTGTACCCTGTCATTGCTG
TTTATGTTCAGCGGGAGGGGAGAGAGGAGGGTGCGTGATGGGGAGACTTT
GGAGAGTTGAGGTGCTTTTTAAGTGTGAGGCTGATGATCCGCTCGACTCT
CGGACGCGAGCTGGCAGAAGAAGAGGGTGGCAAAAAGTTTTGACGTTTTT
GCATGCGATTCGTTCGGTGGTACGAGTTGTTGCTTTATGTGTGGTGGTTA
GATCAAAATATTATGCCTACTATACTCTCTTTGCTCTTAATGATATTATT
TTGAGTTTTTTTTTGTGGCGAAGGATTCATTATCACGTATCTCGGTATGA
CACCTAGATGGAGACGATGGGGGGGGTTGTGTCGGGTATTGTACCCTGTC
ATTGCTGTTTATGTTCAGCGGGAGGGGAGAGAGGAGGGTGCGTGATGGGG
AGACTTTGGAGAGTTGAGGTGCTTTTTAAGTGTGAGGCTGATGATCCGCT
CGACTCTCGGACGCGAGCTGGCAGAAGAAGAGGGTGGCAAAAAGTTTTGA
CGTTTTTGCATGCGATTCGTTCGGTGGTACGAGTTGTTGCTTTATGTGTG
GTGGTTAGATCAAAATATTATGCCTACTATACTCTCTTTGCTCTTAATGA
TATTATTTTGAGTTTTTTTTTGTGGCGAAGGATTCATTATCACGTATCTC
GGTATGACACCTAG
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