mRNA_S-dermatodea_contig10842.570.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI) HSP 1 Score: 345 bits (884), Expect = 9.390e-109 Identity = 179/245 (73.06%), Postives = 205/245 (83.67%), Query Frame = 1
Query: 1 VGQKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGDG 735
+ QKLIE YDTNGDGVLQP+EF K D+R+RL+S+FADRAQEAR+ AA R +EIE RGA KAR+EAKARGL +PEDFNDGP T DK L VLPY LPLMD+LV+G+HIF T+PTQLS LEPLV +LLIYRSLPFSGLILFFGLQWFA+KPEVNKLVR+NLRQAV LDIAMFFPSI AF+ +VLG+ +AKL PLAT +DVIFVTV+ CVLYSI SSA GVLPE +P + MNRE TR + DG
Sbjct: 183 LAQKLIESYDTNGDGVLQPSEFASKADMRVRLDSLFADRAQEARLEAAAAREREIENRGADKARQEAKARGLALPEDFNDGPPTITDKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEVNKLVRFNLRQAVILDIAMFFPSIFAFIITSVLGEDSAKLAPLATVCNDVIFVTVVACVLYSIASSAIGVLPESLPILGKMNRESTRAKEDDG 427
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE) HSP 1 Score: 205 bits (522), Expect = 1.330e-57 Identity = 111/243 (45.68%), Postives = 160/243 (65.84%), Query Frame = 1
Query: 13 LIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGDGGD 741
L+ YD NGDG+LQ +EF P E++R RLE++F+ + +E R+ R++ K R +A A + P D NDGPAT DKAL LPYVLPL D +V+ +H+F +P Q + +PL +LL RS+PF+ L+ FF L +S P++NKLVR+N++QA+NLDIA+ P ++ +T AVLG A+KL PLA AGSDV+FV ++ V YS+G+SA G P ++P + +NRE D +GG+
Sbjct: 40 LVRSYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERV----ARMEXXXXXXXXKMRPDAGAVEV-SPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLVGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRE--NPDNQEGGE 275
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI) HSP 1 Score: 207 bits (528), Expect = 8.260e-57 Identity = 111/244 (45.49%), Postives = 158/244 (64.75%), Query Frame = 1
Query: 10 KLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGDGGD 741
KLI+ YD NGDG+LQ +EF P E++R RLE++F+ + +E R+ E +R A + P D NDGPAT DKAL LPYVLPL D +V+ +H+F +P Q + +PL +LL RS+PF+ LI FF L ++S P++NKLVR+N++QA+NLDIA+ P ++ +T AVLG A+KL PLA A SDV+FV ++ V YS+G+SA G P ++P + +NRE D +GG+
Sbjct: 176 KLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXDRMRPDA-----GTVVVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIWSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANASSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRE--NPDNQEGGE 412
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA) HSP 1 Score: 203 bits (516), Expect = 4.270e-55 Identity = 108/243 (44.44%), Postives = 157/243 (64.61%), Query Frame = 1
Query: 1 VGQKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPED-FNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDK 726
+ +KLI+ YD NGDG+LQ +EF P E++R RLE++F D+ + AR E R +++E++ A E G +P NDGPATA DKAL LPY+LPL+D + + H+F +P Q + +PL +LL RSLPF+ L+ FF L + P+VNKLVR+N++QA+NLDIA+ P +L L LG A KL PLA AGSDV+FV ++ V YS+ +S+ G P ++P + +NRE +++
Sbjct: 171 LARKLIDTYDQNGDGLLQRSEFAPTEELRTRLENMFRDQQETARQARVEERQRQMEDK---LAAEVGTGAGAVVPAGGVNDGPATAADKALSALPYLLPLVDGISFAGHLFGAFPEQTAWAQPLAAVLLALRSLPFATLVGFFSLSALSGNPQVNKLVRFNMQQAINLDIALIVPGVLGALASVSLGQDAYKLVPLAEAGSDVVFVAMLAAVAYSVVTSSTGSFPNKLPLLGRLNRENPDREE 410
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI) HSP 1 Score: 192 bits (488), Expect = 2.890e-51 Identity = 101/218 (46.33%), Postives = 148/218 (67.89%), Query Frame = 1
Query: 10 KLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFG 663
KLI+ YD NGDG+LQ +EF P E++R RLE++ + + ++ R+ E R +++++ K R + A + P D NDGPAT DKAL LPY+LPL+D +++ +H+F +P Q + +PL +LL RSLPF+ LI FF L +S P VNKLVR+N++QA+NLDIA+ P ++ +T +LG A KL PL+ AGSDV+FV ++ V YS+G+SA G
Sbjct: 176 KLIQTYDQNGDGLLQQSEFAPTEELRTRLENLLSQQREDERLARLEERQRQMDD----KMRPDTGA-VVVSPGDVNDGPATTADKALSALPYLLPLVDGILFAAHLFGAFPEQTAWAQPLAAVLLALRSLPFATLIGFFSLSIGSSNPRVNKLVRFNMQQAINLDIALILPGVVGAITGGMLGADAVKLAPLSNAGSDVVFVALLAAVAYSVGTSATG 388
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE) HSP 1 Score: 187 bits (475), Expect = 2.250e-49 Identity = 105/248 (42.34%), Postives = 155/248 (62.50%), Query Frame = 1
Query: 1 VGQKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKARE-EAKARGLPM------PEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKD 723
+ ++LI++YD NGDGVLQ +EF P E++R RLESIF +R +E E+E R A++ RE +AK G D AT+L+KALC LPY+LPL D +VY HI++T+P Q++ EPLV +L+ +LPF+ L+ FFG+ +S +NKL+R+N+ QA+N DIA+ PS+ L LG A K++P+ +D++ V+++L V YSI +SA G +P +IP +NR TR D
Sbjct: 168 LAERLIKLYDQNGDGVLQQSEFAPTEELRARLESIFRERREE-----------ELEARQAERKREMDAKTTGKGKMLSSVADSDREAASATSLEKALCALPYILPLSDGIVYAQHIYSTFPQQMAWSEPLVAILIAVNNLPFATLVAFFGMSILSSNQNINKLLRFNMLQAINFDIALIVPSVFGPLLTWSLGSDAYKISPVTDIATDILSVSLVLAVAYSIAASATGAIPNKIPFFGKINRV-TRDD 403
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE) HSP 1 Score: 174 bits (442), Expect = 3.230e-47 Identity = 89/173 (51.45%), Postives = 121/173 (69.94%), Query Frame = 1
Query: 223 PEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGDGGD 741
P D NDGPAT DKAL LPYVLPL D +V+ +H+F +P Q + EPLV +LL RS+PF+ LI FF L +S P++NKLVR+N++QA+NLDIA+ P ++ +T AVLG A+KL PLA AGSDV+FV ++ V YS+G+SA G P ++P + +NRE D +GG+
Sbjct: 23 PGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAEPLVAVLLALRSVPFATLIGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRE--NPDNQEGGE 193
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI) HSP 1 Score: 147 bits (371), Expect = 5.130e-35 Identity = 78/173 (45.09%), Postives = 110/173 (63.58%), Query Frame = 1
Query: 10 KLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSI 528
KLI+ YD NGDG+LQ +EF P E++R RLE++F+ + +E R+ E +R A + P D NDGPAT DKAL LPYVLPL D +V+ +H+F + Q + +PL +LL RS+PF+ LI FF L +S P++NKLVR+N++QA+NLDIA+ P +
Sbjct: 176 KLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXDRMRPDA-----GTVVVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFLEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIGSSNPQINKLVRFNMQQAINLDIALILPGV 343
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A7R9ZHH2_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHH2_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.130e-33 Identity = 86/229 (37.55%), Postives = 135/229 (58.95%), Query Frame = 1
Query: 7 QKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGIS 693
++L+E++DT+GDG LQP+EFV + R +L+++ +E + +A E EE +KA E + + NDGP TA DKA+ +LPY+ PLMD L YG + ++ + L IYRS+PFSG + FF L +S +N+LVRYN++QA+ +DIA+FFP ++ + A+ G T ++ G+D IFVT++ + Y SS G+ P+++P IS
Sbjct: 143 KELMEVFDTSGDGALQPDEFVTIDRFRNQLDAL----TREEKRLALEA----AEEAKKEKAEAEILEAKMTL---LNDGPPTAQDKAVSLLPYLFPLMDGLAYGRFLLQNADAANPIVDVIAILYTIYRSIPFSGFVAFFALNILSSVTGINRLVRYNMQQAIFIDIALFFPGLIGGVIGAIGGSNIP--TGVSEIGTDAIFVTLLAVLGYCTVSSILGITPDKLPLIS 358
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: K0RZH9_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZH9_THAOC) HSP 1 Score: 136 bits (343), Expect = 2.720e-31 Identity = 87/230 (37.83%), Postives = 135/230 (58.70%), Query Frame = 1
Query: 7 QKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATA-GSDVIFVTVILCVLYSIGSSAFGVLPEEIPGIS 693
++L++++DT+GDG LQ +EFV + R +LE++ A+E + IAAE E+ +++ +EA + E N+ T DK + VLPY+ PLMD L YG + + L L +YRS+PFSG + FF L ++ P +N+L+R+N+ QA+ LDIA+FFPS+ L+ +LG ++ +A+ SDV F T++L +LY SS FG P+ IP IS
Sbjct: 139 KELMDVFDTSGDGALQVDEFVTLDKFRNQLEAL----AREEKRIAAEA------EQESKRQEQEALLAEAKL-EFLNEKEPTTSDKVISVLPYLFPLMDGLQYGRFLLGAEDGSNPFIVILALLYTLYRSIPFSGFVAFFALNILSNNPSLNRLIRFNMSQAIFLDIALFFPSLFVGLSGMILGAAGGPISNVASEIFSDVTFGTLLLTLLYCAVSSLFGREPDNIPLIS 357 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10842.570.1 >prot_S-dermatodea_contig10842.570.1 ID=prot_S-dermatodea_contig10842.570.1|Name=mRNA_S-dermatodea_contig10842.570.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=209bp MIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPback to top mRNA from alignment at S-dermatodea_contig10842:2105..5625+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10842.570.1 ID=mRNA_S-dermatodea_contig10842.570.1|Name=mRNA_S-dermatodea_contig10842.570.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3521bp|location=Sequence derived from alignment at S-dermatodea_contig10842:2105..5625+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10842:2105..5625+ >mRNA_S-dermatodea_contig10842.570.1 ID=mRNA_S-dermatodea_contig10842.570.1|Name=mRNA_S-dermatodea_contig10842.570.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at S-dermatodea_contig10842:2105..5625+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |