mRNA_S-dermatodea_contig10842.570.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10842.570.1
Unique NamemRNA_S-dermatodea_contig10842.570.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 9.390e-109
Identity = 179/245 (73.06%), Postives = 205/245 (83.67%), Query Frame = 1
Query:    1 VGQKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGDG 735
            + QKLIE YDTNGDGVLQP+EF  K D+R+RL+S+FADRAQEAR+ AA  R +EIE RGA KAR+EAKARGL +PEDFNDGP T  DK L VLPY LPLMD+LV+G+HIF T+PTQLS LEPLV +LLIYRSLPFSGLILFFGLQWFA+KPEVNKLVR+NLRQAV LDIAMFFPSI AF+  +VLG+ +AKL PLAT  +DVIFVTV+ CVLYSI SSA GVLPE +P +  MNRE TR  + DG
Sbjct:  183 LAQKLIESYDTNGDGVLQPSEFASKADMRVRLDSLFADRAQEARLEAAAAREREIENRGADKARQEAKARGLALPEDFNDGPPTITDKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEVNKLVRFNLRQAVILDIAMFFPSIFAFIITSVLGEDSAKLAPLATVCNDVIFVTVVACVLYSIASSAIGVLPESLPILGKMNRESTRAKEDDG 427          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.330e-57
Identity = 111/243 (45.68%), Postives = 160/243 (65.84%), Query Frame = 1
Query:   13 LIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGDGGD 741
            L+  YD NGDG+LQ +EF P E++R RLE++F+ + +E R+     R++        K R +A A  +  P D NDGPAT  DKAL  LPYVLPL D +V+ +H+F  +P Q +  +PL  +LL  RS+PF+ L+ FF L   +S P++NKLVR+N++QA+NLDIA+  P ++  +T AVLG  A+KL PLA AGSDV+FV ++  V YS+G+SA G  P ++P +  +NRE    D  +GG+
Sbjct:   40 LVRSYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERV----ARMEXXXXXXXXKMRPDAGAVEV-SPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLVGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRE--NPDNQEGGE 275          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 8.260e-57
Identity = 111/244 (45.49%), Postives = 158/244 (64.75%), Query Frame = 1
Query:   10 KLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGDGGD 741
            KLI+ YD NGDG+LQ +EF P E++R RLE++F+ + +E R+   E       +R    A        +  P D NDGPAT  DKAL  LPYVLPL D +V+ +H+F  +P Q +  +PL  +LL  RS+PF+ LI FF L  ++S P++NKLVR+N++QA+NLDIA+  P ++  +T AVLG  A+KL PLA A SDV+FV ++  V YS+G+SA G  P ++P +  +NRE    D  +GG+
Sbjct:  176 KLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXDRMRPDA-----GTVVVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIWSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANASSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRE--NPDNQEGGE 412          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 203 bits (516), Expect = 4.270e-55
Identity = 108/243 (44.44%), Postives = 157/243 (64.61%), Query Frame = 1
Query:    1 VGQKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPED-FNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDK 726
            + +KLI+ YD NGDG+LQ +EF P E++R RLE++F D+ + AR    E R +++E++    A E     G  +P    NDGPATA DKAL  LPY+LPL+D + +  H+F  +P Q +  +PL  +LL  RSLPF+ L+ FF L   +  P+VNKLVR+N++QA+NLDIA+  P +L  L    LG  A KL PLA AGSDV+FV ++  V YS+ +S+ G  P ++P +  +NRE   +++
Sbjct:  171 LARKLIDTYDQNGDGLLQRSEFAPTEELRTRLENMFRDQQETARQARVEERQRQMEDK---LAAEVGTGAGAVVPAGGVNDGPATAADKALSALPYLLPLVDGISFAGHLFGAFPEQTAWAQPLAAVLLALRSLPFATLVGFFSLSALSGNPQVNKLVRFNMQQAINLDIALIVPGVLGALASVSLGQDAYKLVPLAEAGSDVVFVAMLAAVAYSVVTSSTGSFPNKLPLLGRLNRENPDREE 410          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.890e-51
Identity = 101/218 (46.33%), Postives = 148/218 (67.89%), Query Frame = 1
Query:   10 KLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFG 663
            KLI+ YD NGDG+LQ +EF P E++R RLE++ + + ++ R+   E R +++++    K R +  A  +  P D NDGPAT  DKAL  LPY+LPL+D +++ +H+F  +P Q +  +PL  +LL  RSLPF+ LI FF L   +S P VNKLVR+N++QA+NLDIA+  P ++  +T  +LG  A KL PL+ AGSDV+FV ++  V YS+G+SA G
Sbjct:  176 KLIQTYDQNGDGLLQQSEFAPTEELRTRLENLLSQQREDERLARLEERQRQMDD----KMRPDTGA-VVVSPGDVNDGPATTADKALSALPYLLPLVDGILFAAHLFGAFPEQTAWAQPLAAVLLALRSLPFATLIGFFSLSIGSSNPRVNKLVRFNMQQAINLDIALILPGVVGAITGGMLGADAVKLAPLSNAGSDVVFVALLAAVAYSVGTSATG 388          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.250e-49
Identity = 105/248 (42.34%), Postives = 155/248 (62.50%), Query Frame = 1
Query:    1 VGQKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKARE-EAKARGLPM------PEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKD 723
            + ++LI++YD NGDGVLQ +EF P E++R RLESIF +R +E           E+E R A++ RE +AK  G           D     AT+L+KALC LPY+LPL D +VY  HI++T+P Q++  EPLV +L+   +LPF+ L+ FFG+   +S   +NKL+R+N+ QA+N DIA+  PS+   L    LG  A K++P+    +D++ V+++L V YSI +SA G +P +IP    +NR  TR D
Sbjct:  168 LAERLIKLYDQNGDGVLQQSEFAPTEELRARLESIFRERREE-----------ELEARQAERKREMDAKTTGKGKMLSSVADSDREAASATSLEKALCALPYILPLSDGIVYAQHIYSTFPQQMAWSEPLVAILIAVNNLPFATLVAFFGMSILSSNQNINKLLRFNMLQAINFDIALIVPSVFGPLLTWSLGSDAYKISPVTDIATDILSVSLVLAVAYSIAASATGAIPNKIPFFGKINRV-TRDD 403          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.230e-47
Identity = 89/173 (51.45%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  223 PEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGDGGD 741
            P D NDGPAT  DKAL  LPYVLPL D +V+ +H+F  +P Q +  EPLV +LL  RS+PF+ LI FF L   +S P++NKLVR+N++QA+NLDIA+  P ++  +T AVLG  A+KL PLA AGSDV+FV ++  V YS+G+SA G  P ++P +  +NRE    D  +GG+
Sbjct:   23 PGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAEPLVAVLLALRSVPFATLIGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRE--NPDNQEGGE 193          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 5.130e-35
Identity = 78/173 (45.09%), Postives = 110/173 (63.58%), Query Frame = 1
Query:   10 KLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSI 528
            KLI+ YD NGDG+LQ +EF P E++R RLE++F+ + +E R+   E       +R    A        +  P D NDGPAT  DKAL  LPYVLPL D +V+ +H+F  +  Q +  +PL  +LL  RS+PF+ LI FF L   +S P++NKLVR+N++QA+NLDIA+  P +
Sbjct:  176 KLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXDRMRPDA-----GTVVVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFLEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIGSSNPQINKLVRFNMQQAINLDIALILPGV 343          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: A0A7R9ZHH2_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHH2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.130e-33
Identity = 86/229 (37.55%), Postives = 135/229 (58.95%), Query Frame = 1
Query:    7 QKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGIS 693
            ++L+E++DT+GDG LQP+EFV  +  R +L+++     +E + +A E      EE   +KA  E     + +    NDGP TA DKA+ +LPY+ PLMD L YG  +          ++ +  L  IYRS+PFSG + FF L   +S   +N+LVRYN++QA+ +DIA+FFP ++  +  A+ G      T ++  G+D IFVT++  + Y   SS  G+ P+++P IS
Sbjct:  143 KELMEVFDTSGDGALQPDEFVTIDRFRNQLDAL----TREEKRLALEA----AEEAKKEKAEAEILEAKMTL---LNDGPPTAQDKAVSLLPYLFPLMDGLAYGRFLLQNADAANPIVDVIAILYTIYRSIPFSGFVAFFALNILSSVTGINRLVRYNMQQAIFIDIALFFPGLIGGVIGAIGGSNIP--TGVSEIGTDAIFVTLLAVLGYCTVSSILGITPDKLPLIS 358          
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Match: K0RZH9_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZH9_THAOC)

HSP 1 Score: 136 bits (343), Expect = 2.720e-31
Identity = 87/230 (37.83%), Postives = 135/230 (58.70%), Query Frame = 1
Query:    7 QKLIEIYDTNGDGVLQPNEFVPKEDIRLRLESIFADRAQEARMIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLPYVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGLQWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTPLATA-GSDVIFVTVILCVLYSIGSSAFGVLPEEIPGIS 693
            ++L++++DT+GDG LQ +EFV  +  R +LE++    A+E + IAAE       E+ +++  +EA      + E  N+   T  DK + VLPY+ PLMD L YG  +          +  L  L  +YRS+PFSG + FF L   ++ P +N+L+R+N+ QA+ LDIA+FFPS+   L+  +LG     ++ +A+   SDV F T++L +LY   SS FG  P+ IP IS
Sbjct:  139 KELMDVFDTSGDGALQVDEFVTLDKFRNQLEAL----AREEKRIAAEA------EQESKRQEQEALLAEAKL-EFLNEKEPTTSDKVISVLPYLFPLMDGLQYGRFLLGAEDGSNPFIVILALLYTLYRSIPFSGFVAFFALNILSNNPSLNRLIRFNMSQAIFLDIALFFPSLFVGLSGMILGAAGGPISNVASEIFSDVTFGTLLLTLLYCAVSSLFGREPDNIPLIS 357          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10842.570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTM8_ECTSI9.390e-10973.06TIC 20 related, plastid import n=2 Tax=Ectocarpus ... [more]
A0A6H5KUU9_9PHAE1.330e-5745.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LS19_ECTSI8.260e-5745.49EF-hand domain-containing protein n=7 Tax=Ectocarp... [more]
A0A2I6U1M4_SACJA4.270e-5544.44Tic20-like protein n=15 Tax=Saccharina japonica Ta... [more]
D7FRG5_ECTSI2.890e-5146.33EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5JY95_9PHAE2.250e-4942.34EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5KVD7_9PHAE3.230e-4751.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS20_ECTSI5.130e-3545.09EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7R9ZHH2_9STRA2.130e-3337.55Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
K0RZH9_THAOC2.720e-3137.83Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10842contigS-dermatodea_contig10842:2105..5625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.1
Seed ortholog evalue1.1e-73
Seed eggNOG ortholog2880.D8LTM8
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.protein transport
EggNOG OGs2BYWW@1,2QUSD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTIC 20 related, plastid import
Ec32 orthologEc-28_003500.1
Exons4
Model size2007
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10842.570.1prot_S-dermatodea_contig10842.570.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10842 2642..4377 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924176.5776033-UTR-S-dermatodea_contig10842:2104..22271622924176.5776033-UTR-S-dermatodea_contig10842:2104..2227Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10842 2105..2227 +
1694079070.4039812-UTR-S-dermatodea_contig10842:2104..22271694079070.4039812-UTR-S-dermatodea_contig10842:2104..2227Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10842 2105..2227 +
1622924176.5872564-UTR-S-dermatodea_contig10842:2632..26411622924176.5872564-UTR-S-dermatodea_contig10842:2632..2641Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10842 2633..2641 +
1694079070.416953-UTR-S-dermatodea_contig10842:2632..26411694079070.416953-UTR-S-dermatodea_contig10842:2632..2641Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10842 2633..2641 +
1622924176.6341922-UTR-S-dermatodea_contig10842:4377..56251622924176.6341922-UTR-S-dermatodea_contig10842:4377..5625Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10842 4378..5625 +
1694079070.4505036-UTR-S-dermatodea_contig10842:4377..56251694079070.4505036-UTR-S-dermatodea_contig10842:4377..5625Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10842 4378..5625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924176.5957987-CDS-S-dermatodea_contig10842:2641..28571622924176.5957987-CDS-S-dermatodea_contig10842:2641..2857Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10842 2642..2857 +
1694079070.4257693-CDS-S-dermatodea_contig10842:2641..28571694079070.4257693-CDS-S-dermatodea_contig10842:2641..2857Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10842 2642..2857 +
1622924176.6096249-CDS-S-dermatodea_contig10842:3202..33101622924176.6096249-CDS-S-dermatodea_contig10842:3202..3310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10842 3203..3310 +
1694079070.4346664-CDS-S-dermatodea_contig10842:3202..33101694079070.4346664-CDS-S-dermatodea_contig10842:3202..3310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10842 3203..3310 +
1622924176.621834-CDS-S-dermatodea_contig10842:4074..43771622924176.621834-CDS-S-dermatodea_contig10842:4074..4377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10842 4075..4377 +
1694079070.4427466-CDS-S-dermatodea_contig10842:4074..43771694079070.4427466-CDS-S-dermatodea_contig10842:4074..4377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10842 4075..4377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10842.570.1

>prot_S-dermatodea_contig10842.570.1 ID=prot_S-dermatodea_contig10842.570.1|Name=mRNA_S-dermatodea_contig10842.570.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=209bp
MIAAETRVKEIEERGAQKAREEAKARGLPMPEDFNDGPATALDKALCVLP
YVLPLMDNLVYGSHIFNTYPTQLSALEPLVRLLLIYRSLPFSGLILFFGL
QWFASKPEVNKLVRYNLRQAVNLDIAMFFPSILAFLTQAVLGDGAAKLTP
LATAGSDVIFVTVILCVLYSIGSSAFGVLPEEIPGISAMNREGTRKDKGD
GGDSSKGP*
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mRNA from alignment at S-dermatodea_contig10842:2105..5625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10842.570.1 ID=mRNA_S-dermatodea_contig10842.570.1|Name=mRNA_S-dermatodea_contig10842.570.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3521bp|location=Sequence derived from alignment at S-dermatodea_contig10842:2105..5625+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGGCCAGAAGCTGATTGAAATCTACGACACCAATGGAGACGGCGTGTT GCAGCCTAACGAGTTCGTCCCGAAGGAGGACATCAGACTCAGGCTGGAGA GCATTTTTGCGGATCGTGCACAGGTACGAGTACACCTGATTCGTGGCAAT GTTCGCGATAATTCGGCAACGAGAGGCGCCGACCCTGCGAGCGATGCGGC TATGCAATGGGGGAACTGGGCGTAGACGTGCAGCCGGTGGCGGTAGAGGC AGGGGAGTGATTAACGATGTGTTTGGGGGAAATGTTGGCACCAGCGTGCT TCAAATGCCGTTTTCTTCTTCCCGCGGCCATTTTCAGAGTTGAAGGTCAT GCTGGGCTTGTCCTAAATGATCTCGATGCACTTCATTGAGGGTATTTAGC TACTTGACAGATGAGACGGCCAAACGTCGTACCGTATTCGTGCCACCGCA ACTAGCGACAACCGCCCTCTCCCCCCCATCGGTCGCCTCATTGCAACGGC GCTTGTCGTTGACGGTAAACGCTGTCAGGAAGCGCGCATGATCGCCGCCG AAACCCGCGTAAAAGAGATCGAGGAGCGGGGCGCTCAGAAAGCGAGGGAG GAGGCTAAGGCGAGAGGGCTGCCTATGCCGGAAGATTTCAACGACGGGCC GGCGACCGCGCTCGACAAGGCCCTGTGCGTCCTGCCGTACGTGCTGCCCC TCATGGATAACCTCGTCTACGGATCACACATCTTCAACACCTACCCCACC CAGGTTTGTCGCGTGGGCAAGGGAACCAACGGAGTGCGGCTCCAGGAGCG CGCGCTTGCGCGTGTTGTCGCTATGGACGGGATTGAGAAGGGTGGGGTGG GGGGAACTTTGGTTGGTTCGTCTTCAAGAGCGCCATGCACGTGGTTTTTG TGCCGGGCGAGCTCCGCTCAATATTTTGGTTGCGGGGAGGGGATGTATAG CCTTGCTAGCGATGCACCTGCCGAAGTCGGAAGTGGTAAAAGTGTGATCG ACTACCTTGTAATTCAGCGATGCCTTAACTTCCTCACGGTCCCCTGCTCG TCTCTTTGGTGCCACTGAAATCGACCTTTGCTCTAATCTGTCGATCAGTT GAGCGCGCTGGAGCCTCTGGTCAGGTTGCTGCTCATCTACCGCTCTCTGC CGTTCAGCGGCCTGATATTGTTCTTCGGCCTGCAGTGGTTCGCGTCGAAG CCAGAGGTACGCCATCGCTGTACCCCCCCCCCCCTCCCCGCCCCCGATGA TAACACGGAGCACGCGGGCTTGGGTTATCTTCGTTGGCTGATATCGGCAC TCAGGACAAACCTTTTGTCGCTTTTCCGACAGGCGAGTTTCTTTTTCAGG TTCAGCACTATGCCCGTTGTGTTCAGCGGAGGTCGGCGGGCGCTTGCCGG AGCGTTCTATAATCGCGTCCATGGTGCACTCATAATTGCTAGACGGACGG CGTCCAGTAGTGTTGTTCCGTGCTGCGATGTGGTCTCCTGTTACGTCGCT TATAAGCACAGACGGGTGAGTGCATCCGATGCCTTCAAGCTTTCAACCCT GACCTCGGTCAAGCGCATCTTTCAAAAGCCCTCCTCTCCCCACCATGTCT CAGATAATGGAAACCCGAGCGGCGTTACGCCCTCCTTACCAACGATGTGT GCCGTACCGCTGATGGAGGGCGTCGGTCAAACAACGGCGAGGGCGTGGAT ACGATGCGCTTATCCATCCGCATTATTTCGTGCTGAAACTGCTCCACAGC CTCATGCCGAAGGCGCAACGAGAAATCGGCGCCGTGTTAGTACATCCCCG TGGAAACAGGAGAAACTTTAGTCATCGGCGGGAAACGGAGTTCGTCCCGT CCCTCACCTAAATTTGACGAGCCGTTGAGCACGCTTACACCCGCCGCCTT ATCTCTATGCGCCCCTTCTGCTGTCCCCGTCGCCGCCCCCGCGCTCTGGC GCGGAATCCCCCCTCCCCAGGTGAACAAGCTTGTGCGGTACAACCTCCGC CAAGCGGTCAACCTCGATATCGCTATGTTTTTCCCGTCAATCTTGGCCTT CTTGACGCAGGCCGTCCTCGGCGACGGCGCGGCCAAGCTGACCCCCCTGG CGACCGCGGGGTCGGACGTAATCTTCGTTACGGTGATTTTGTGTGTTTTG TACTCGATAGGGTCTTCCGCGTTCGGGGTGCTGCCCGAAGAGATTCCCGG AATCAGCGCGATGAACCGCGAGGGTACCCGCAAGGATAAGGGTGATGGGG GTGATAGCAGCAAGGGCCCGTGATTGTTGTGGAAACGTTATTGCGGGAAG AACCGGCGGTTGGCCGTGTGCGGACGACCGTTTTGACATTGAAGGTGCCA TGCTCATGTCGACAAGATGTAGTTGTTGTAAGGCAGGAAGGCTCGGATGC AGCATGGGCGCGCGCATGGGTATCCTCTTTCGCGGGGTTTGGTGAGTTGT GTGGTTGGTATCGGGAAGCTTTGAGCTCGTCGACACCTAAGCGGTGGCGA CTAAATTGACGAAATTGGAGCTAGAATATTGGGTAAGTCGGCGTATAGAA AATTACGGCAAAGTGGCATTACAGTTTTGGTGCTGGTGACACAGGAAACA TTAACATTTAACCGCACCACGTTCAACGCAGGCCTTGCCCCCATGCGGTC GACCGGGGTTGATTTGAAGGAGAGGGGTCTTTACGAACGTCTTGTGGCGC ACGCGTTAGGATGAGGCTTCTCGTTTGGAAGTTGACACAATGAGGTGTCG GCCAGAATCGATACAATAGAATAGAGTCTTCCGACTCGGAGAATCCCACA CACGAAGCGTTTCGTTGGACACGGAAAGGAAATTTTCCCCAAACCTGCCG AATAGCAAGTCTGTGGGTTGGGACATCAGTGTACCCGAGCGGTGGTTGGC GCTGTTTGCGTCTGCCATAGCCGGCAAGGCTGCTGCATCGGTTCTCTAAG TAGTGCGCCACACCGCGGTGGGTTTAGATGCACTTTATTTTAAGCTCTAG GGTTAAGGCTCTTCAGTTCAGCCGTGTTCATGAATTCAGGCAAAGCAGGC GGCTTCTTAATCATAAAGTTAGTAGGCGGACAACGGACTGTGGAACTTGA GGCCCGGAGAGCTGGGTACTTCATCCGACGCCACGTTGTACCTTATCCTT TTAGTGTTGATCGGGTTGATTGCCGCGCTCGCACTGATGCTGCGTAGTAG CCGTAGAGCGTGTGGTGGTGCTAAAGTAAACCTCGTTGTACAGAGCTGGA GATAGTATACACGACAGCGTGTATATGTGTCGCTCCGTAGGTGACTTACT GCCCGTTTCCTCTTGGCCAGGAAAACTGCAACACACACTTGAGTACATGG AGACGAGGTGGAGCCATATCGTAGGGGTGCCCGATACCAGTAGTTACCAA AGGGTTATAACTCGTGGCGGAAGGGTGGCCGTTTGCCTTGACGTGCATGG CGGAACAAGCAACATTTCTCCGAGACAAACTATGCCATACAAATGAATCA CAACGGCCGGGGGTCGTCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10842:2105..5625+

>mRNA_S-dermatodea_contig10842.570.1 ID=mRNA_S-dermatodea_contig10842.570.1|Name=mRNA_S-dermatodea_contig10842.570.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at S-dermatodea_contig10842:2105..5625+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCGCCGCCGAAACCCGCGTAAAAGAGATCGAGGAGCGGGGCGCTCA
GAAAGCGAGGGAGGAGGCTAAGGCGAGAGGGCTGCCTATGCCGGAAGATT
TCAACGACGGGCCGGCGACCGCGCTCGACAAGGCCCTGTGCGTCCTGCCG
TACGTGCTGCCCCTCATGGATAACCTCGTCTACGGATCACACATCTTCAA
CACCTACCCCACCCAGATGATCGCCGCCGAAACCCGCGTAAAAGAGATCG
AGGAGCGGGGCGCTCAGAAAGCGAGGGAGGAGGCTAAGGCGAGAGGGCTG
CCTATGCCGGAAGATTTCAACGACGGGCCGGCGACCGCGCTCGACAAGGC
CCTGTGCGTCCTGCCGTACGTGCTGCCCCTCATGGATAACCTCGTCTACG
GATCACACATCTTCAACACCTACCCCACCCAGTTGAGCGCGCTGGAGCCT
CTGGTCAGGTTGCTGCTCATCTACCGCTCTCTGCCGTTCAGCGGCCTGAT
ATTGTTCTTCGGCCTGCAGTGGTTCGCGTCGAAGCCAGAGTTGAGCGCGC
TGGAGCCTCTGGTCAGGTTGCTGCTCATCTACCGCTCTCTGCCGTTCAGC
GGCCTGATATTGTTCTTCGGCCTGCAGTGGTTCGCGTCGAAGCCAGAGGT
GAACAAGCTTGTGCGGTACAACCTCCGCCAAGCGGTCAACCTCGATATCG
CTATGTTTTTCCCGTCAATCTTGGCCTTCTTGACGCAGGCCGTCCTCGGC
GACGGCGCGGCCAAGCTGACCCCCCTGGCGACCGCGGGGTCGGACGTAAT
CTTCGTTACGGTGATTTTGTGTGTTTTGTACTCGATAGGGTCTTCCGCGT
TCGGGGTGCTGCCCGAAGAGATTCCCGGAATCAGCGCGATGAACCGCGAG
GGTACCCGCAAGGATAAGGGTGATGGGGGTGATAGCAGCAAGGGCCCGTG
AGTGAACAAGCTTGTGCGGTACAACCTCCGCCAAGCGGTCAACCTCGATA
TCGCTATGTTTTTCCCGTCAATCTTGGCCTTCTTGACGCAGGCCGTCCTC
GGCGACGGCGCGGCCAAGCTGACCCCCCTGGCGACCGCGGGGTCGGACGT
AATCTTCGTTACGGTGATTTTGTGTGTTTTGTACTCGATAGGGTCTTCCG
CGTTCGGGGTGCTGCCCGAAGAGATTCCCGGAATCAGCGCGATGAACCGC
GAGGGTACCCGCAAGGATAAGGGTGATGGGGGTGATAGCAGCAAGGGCCC
GTGA
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