mRNA_S-dermatodea_contig10831.563.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10831.563.1
Unique NamemRNA_S-dermatodea_contig10831.563.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10831.563.1 vs. uniprot
Match: D7FV62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV62_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 6.240e-51
Identity = 94/121 (77.69%), Postives = 105/121 (86.78%), Query Frame = 1 
Query:   28 MDFSSTSAALRCLKRRAAVSDALRGAAERLEGPFAGDGKAMEAETRDVEQEVLPLLGSDEWEGVAVGFLLAKNLVQNKGRGLSSSFLRSLLAHCDQHLEHAEPRVRSLVASTLGALTSAGD 390
            MDFSST AALR LKRR   SDAL+  AE+LEGPFAGDGK +  +T+DVEQ+VL LLG++EWEGV+VGFLLAK+LV NKG+ LS SFLRSLLAHCDQHLEHAEPRVRSLVASTLGALT A D
Sbjct:    1 MDFSSTHAALRSLKRRPTTSDALKNLAEKLEGPFAGDGKGLGDDTQDVEQDVLELLGTEEWEGVSVGFLLAKSLVDNKGQALSPSFLRSLLAHCDQHLEHAEPRVRSLVASTLGALTRADD 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10831.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV62_ECTSI6.240e-5177.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10831contigS-dermatodea_contig10831:4710..6207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue2e-43
Seed eggNOG ortholog2880.D7FV62
EggNOG OGs28JXF@1,2QSBS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-12_007400.1
Exons3
Model size418
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10831.563.1prot_S-dermatodea_contig10831.563.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10831 4710..6180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924175.9182756-CDS-S-dermatodea_contig10831:4709..48831622924175.9182756-CDS-S-dermatodea_contig10831:4709..4883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10831 4710..4883 -
1694079069.8775373-CDS-S-dermatodea_contig10831:4709..48831694079069.8775373-CDS-S-dermatodea_contig10831:4709..4883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10831 4710..4883 -
1622924175.926786-CDS-S-dermatodea_contig10831:5683..57931622924175.926786-CDS-S-dermatodea_contig10831:5683..5793Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10831 5684..5793 -
1694079069.8926647-CDS-S-dermatodea_contig10831:5683..57931694079069.8926647-CDS-S-dermatodea_contig10831:5683..5793Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10831 5684..5793 -
1622924175.939338-CDS-S-dermatodea_contig10831:6074..61801622924175.939338-CDS-S-dermatodea_contig10831:6074..6180Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10831 6075..6180 -
1694079069.9074378-CDS-S-dermatodea_contig10831:6074..61801694079069.9074378-CDS-S-dermatodea_contig10831:6074..6180Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10831 6075..6180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924175.9494028-UTR-S-dermatodea_contig10831:6180..62071622924175.9494028-UTR-S-dermatodea_contig10831:6180..6207Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10831 6181..6207 -
1694079069.9224722-UTR-S-dermatodea_contig10831:6180..62071694079069.9224722-UTR-S-dermatodea_contig10831:6180..6207Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10831 6181..6207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10831.563.1

>prot_S-dermatodea_contig10831.563.1 ID=prot_S-dermatodea_contig10831.563.1|Name=mRNA_S-dermatodea_contig10831.563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=130bp
MDFSSTSAALRCLKRRAAVSDALRGAAERLEGPFAGDGKAMEAETRDVEQ
EVLPLLGSDEWEGVAVGFLLAKNLVQNKGRGLSSSFLRSLLAHCDQHLEH
AEPRVRSLVASTLGALTSAGDTAGGSACDG
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mRNA from alignment at S-dermatodea_contig10831:4710..6207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10831.563.1 ID=mRNA_S-dermatodea_contig10831.563.1|Name=mRNA_S-dermatodea_contig10831.563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1498bp|location=Sequence derived from alignment at S-dermatodea_contig10831:4710..6207- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGGGGCGCCGCGACGCCGTGAAAGGATGGACTTTTCTTCAACTAGTGC
CGCTCTTAGATGTCTCAAGAGGAGGGCCGCTGTATCTGATGCCCTCAGGG
GCGCTGCAGAGAGGCTCGAAGGGCCCTTCGCCGGTGAATTTCGCGGAACA
TACTTGCGTCGGGGCTGTACTTTACTCGCTCGGTTTGCCTACAAGTCGAG
TGCATCCGCTCCAAACTGTCTGTCTCCTGTATCCAGGCTAAAATAGAGCA
GCATTGCTGGTACTCTCGTGGCAACGTCGTGAGGAGATTCCAGCTTCGAT
TCGCAGCGCAGAGTAGTCATATTTTCGCTCGACAAGTTCCACAGGCGCAA
ACAAGTGTTCGAAACCTTGTTGTTTTTTGCCTGCATCTGCTGCTTTTCTG
TTTCTGCTTTCCAGGCGACGGCAAGGCCATGGAAGCCGAGACGCGGGATG
TGGAGCAGGAGGTGCTCCCGTTACTGGGGTCGGACGAGTGGGAGGGCGTA
GCTGTCGGATTCCTCCTCGCCAAGGTGCGGGATGAAGCATAGAAATATGC
AATTTACGCCGTGAAGCTCCCCCTAGGTCCAACAGTAGTAGACAGCAGTA
GTGTTCACTGCCAGCTAGCTGCAGGTCACGAATGCAGTCTCAACATGGGC
GTGATTCTTGAATCTCAAAAGTTGGTACGATACATACCTGATGCATGTTT
CCGCGCCGCGACATCATTTATCAGTACAGTACGTCTAAAATACTATAATA
GGGCTCGATACTTGCACACATGACCGCTTTTTTCTCACACTACCCTACCA
TATCAGCACCGACCAAAATATTACACTACCCTATGCGTACCGCGAACCGG
CAGGTGAATACAACACTACCCTACCGTGAACCGGTTTTGGCGCTGGTCAT
GTGAAAATACAGTATTAATAGTAGAACAGACTACAGAACCAGCACCAACC
CGCGGAAAATGTCACATCAATATCAACCACCAACCGGTTGGCAAAAAAAT
ACGGTCGTAAAAATCTAAAAATCTCACACTACACTAGACTGCCCTATAAT
ACCGCCAAACGATTTTGACTCTGATCACGTGAAATGACAAATGTAACCGC
CGGTTACGTGTAGAGCCCTGTAAACTATATACGATACCAGATTATATTAC
AAACTTCGTATAGTGTTTGTGACACATATGTATCAGACTCGAGAGGATGC
CGATCGGCGCCGTCGGATAAACACTGACTTCCCAATGCTAATACAGTAAT
CATCCCCCAGCATACCCCTCAAAAAGAAAAAAGACCCGCCCCTCCCCCCT
CCCCCCCAACCCTCTGCCTCTCAGAACCTGGTCCAGAACAAAGGCCGCGG
GCTCAGCTCCTCATTCCTGCGCTCCTTGCTAGCCCACTGCGATCAGCACC
TCGAGCACGCCGAGCCCAGGGTTCGTTCCCTTGTAGCCAGCACGCTCGGA
GCCCTCACGAGCGCGGGCGACACAGCGGGCGGCTCCGCCTGCGACGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10831:4710..6207-

>mRNA_S-dermatodea_contig10831.563.1 ID=mRNA_S-dermatodea_contig10831.563.1|Name=mRNA_S-dermatodea_contig10831.563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at S-dermatodea_contig10831:4710..6207- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACTTTTCTTCAACTAGTGCCGCTCTTAGATGTCTCAAGAGGAGGGC
CGCTGTATCTGATGCCCTCAGGGGCGCTGCAGAGAGGCTCGAAGGGCCCT
TCGCCGATGGACTTTTCTTCAACTAGTGCCGCTCTTAGATGTCTCAAGAG
GAGGGCCGCTGTATCTGATGCCCTCAGGGGCGCTGCAGAGAGGCTCGAAG
GGCCCTTCGCCGGCGACGGCAAGGCCATGGAAGCCGAGACGCGGGATGTG
GAGCAGGAGGTGCTCCCGTTACTGGGGTCGGACGAGTGGGAGGGCGTAGC
TGTCGGATTCCTCCTCGCCAAGGCGACGGCAAGGCCATGGAAGCCGAGAC
GCGGGATGTGGAGCAGGAGGTGCTCCCGTTACTGGGGTCGGACGAGTGGG
AGGGCGTAGCTGTCGGATTCCTCCTCGCCAAGAACCTGGTCCAGAACAAA
GGCCGCGGGCTCAGCTCCTCATTCCTGCGCTCCTTGCTAGCCCACTGCGA
TCAGCACCTCGAGCACGCCGAGCCCAGGGTTCGTTCCCTTGTAGCCAGCA
CGCTCGGAGCCCTCACGAGCGCGGGCGACACAGCGGGCGGCTCCGCCTGC
GACGGAAACCTGGTCCAGAACAAAGGCCGCGGGCTCAGCTCCTCATTCCT
GCGCTCCTTGCTAGCCCACTGCGATCAGCACCTCGAGCACGCCGAGCCCA
GGGTTCGTTCCCTTGTAGCCAGCACGCTCGGAGCCCTCACGAGCGCGGGC
GACACAGCGGGCGGCTCCGCCTGCGACGGA
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