mRNA_S-dermatodea_contig1083.562.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1083.562.1
Unique NamemRNA_S-dermatodea_contig1083.562.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: D7G8S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S9_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 3.230e-47
Identity = 74/98 (75.51%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:    1 MEGASLTQSERDAIKVTGFGPSAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLVVVAKAVR 294
            M+ ASLTQS+R+A+ V GFGP+ VHFVKN+GGWMFNL+ +HLLFWLFGFTALLE+GY+DLNQ + GQIKSGPSGSGVGI+TTLLM + +LVVVAKA+R
Sbjct:    1 MDNASLTQSQREALIVKGFGPTMVHFVKNNGGWMFNLVFAHLLFWLFGFTALLEFGYSDLNQDSSGQIKSGPSGSGVGIITTLLMAVGTLVVVAKAIR 98
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: A0A3F2RGG8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGG8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.810e-15
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   64 SAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLVVVAKAV 291
            S VHF+K++ GW FNLI +HLLFW+ GF   LEYGY+  +    G + SGP GSG  +VT  +  L + V +A+ +
Sbjct:   18 SLVHFIKDNSGWTFNLITTHLLFWIVGFPIGLEYGYSSQSYDKKGALPSGPEGSGAYVVTLFVCALCTAVYLARVI 93
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: G4ZCN4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZCN4_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 4.930e-14
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   64 SAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLVVVAKAV 291
            S +HFV ++ GW FNLI +HLL+W+ GF   L+YGY+     A G + SGP GSG  +VT  + VL + V +A+ V
Sbjct:   13 SIIHFVTDNSGWTFNLITTHLLWWIVGFPIALDYGYSSKAYDAKGALPSGPEGSGAYVVTLFVCVLCTAVYMARLV 88
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: A0A0P1A8D3_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8D3_PLAHL)

HSP 1 Score: 70.1 bits (170), Expect = 1.430e-13
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   64 SAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLVVVAK 285
            S VHF+ N+ GW FNLI +HL++W+ GF   LEYGY+       G + SGP GSGV IVT  +  L ++V + +
Sbjct:   14 SIVHFITNNYGWTFNLITTHLMWWIVGFPIALEYGYSSDAYDGKGALPSGPEGSGVYIVTLFVCALCTVVYITR 87
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: A0A329T309_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329T309_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.030e-13
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   64 SAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLVVVAK 285
            S VHFV ++ GW FNLI +HLL+W+ GF   L+YGY+     A G + SGP GSGV +VT  +  L + V  A+
Sbjct:   14 SIVHFVTDNSGWTFNLITTHLLWWIVGFPIALDYGYSSDAYDAKGALPSGPEGSGVYVVTLFVCTLCTAVYFAR 87
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: W2R6Z7_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2R6Z7_PHYPN)

HSP 1 Score: 69.3 bits (168), Expect = 2.880e-13
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   64 SAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLVVVAK 285
            S VHFV ++ GW FNLI +HLL+W+ GF   L+YGY+       G + SGP GSGV IVT  +  L + V +A+
Sbjct:   14 SIVHFVTDNSGWTFNLITTHLLWWIVGFPIALDYGYSSDAYDGKGALPSGPEGSGVYIVTLFVCTLCTAVYLAR 87
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: A0A2P4WWH1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWH1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.000e-12
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   64 SAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLV 273
            S VHFV ++ GW FNLI +HLL+W+ GF   L+YGY+       G + SGP GSG  IVT  +  L +L+
Sbjct:    8 SIVHFVTDNSGWTFNLITTHLLWWIVGFPIGLKYGYSSTAYNTKGGLPSGPEGSGAYIVTLFVCALCTLI 77
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: A0A1V9YG19_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG19_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-11
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   76 FVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLV 273
            ++ N+ GW FN I S++LFWL GF A+ +YGY+  N  A G I SG  GSGV IVT +LMV++ ++
Sbjct:   11 YLSNNVGWAFNFICSNILFWLAGFPAVQKYGYSSENYDAYGGIPSGGEGSGVFIVTLVLMVMNYVI 76
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: A0A485KR65_9STRA (Aste57867_10737 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR65_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.030e-11
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   46 VTGFGP--SAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLV 273
            +T  GP  + + ++ ++ GW FNLI+S++LFWL GF  + +YGY+  N    G I SG  GSGV ++T +LM++  LV
Sbjct:    1 MTAHGPPRTVLGYILDNQGWGFNLIISNILFWLTGFPTVRDYGYSSTNYDENGGIPSGGEGSGVFVITLVLMIVCYLV 78
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BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Match: A0A225X6B2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X6B2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-11
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   64 SAVHFVKNHGGWMFNLIMSHLLFWLFGFTALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLVVVAKAV 291
            S +HFV ++ GW FNLI +HLL+W+ GF   L+YGY+  +    G + SGP GSG  IVT  +  L + V  A+ V
Sbjct:   14 SILHFVLDNSGWTFNLITTHLLWWIVGFPIGLKYGYSSNSYNDKGGLPSGPEGSGAYIVTLFVCALCTAVYFARLV 89
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1083.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G8S9_ECTSI3.230e-4775.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3F2RGG8_9STRA9.810e-1546.05Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
G4ZCN4_PHYSP4.930e-1446.05Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A0P1A8D3_PLAHL1.430e-1345.95Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A329T309_9STRA2.030e-1347.30Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W2R6Z7_PHYPN2.880e-1347.30Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A2P4WWH1_9STRA2.000e-1247.14Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A1V9YG19_9STRA1.000e-1150.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KR65_9STRA1.030e-1142.31Aste57867_10737 protein n=1 Tax=Aphanomyces stella... [more]
A0A225X6B2_9STRA1.320e-1144.74Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1083contigS-dermatodea_contig1083:21017..22239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue4.1e-36
Seed eggNOG ortholog2880.D7G8S9
EggNOG OGs2E1SW@1,2S92Y@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002860.1
Exons2
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924175.8854153-CDS-S-dermatodea_contig1083:21016..211831622924175.8854153-CDS-S-dermatodea_contig1083:21016..21183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1083 21017..21183 +
1694079069.8475397-CDS-S-dermatodea_contig1083:21016..211831694079069.8475397-CDS-S-dermatodea_contig1083:21016..21183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1083 21017..21183 +
1622924175.894544-CDS-S-dermatodea_contig1083:22112..222391622924175.894544-CDS-S-dermatodea_contig1083:22112..22239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1083 22113..22239 +
1694079069.859686-CDS-S-dermatodea_contig1083:22112..222391694079069.859686-CDS-S-dermatodea_contig1083:22112..22239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1083 22113..22239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1083.562.1prot_S-dermatodea_contig1083.562.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1083 21017..22239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1083.562.1

>prot_S-dermatodea_contig1083.562.1 ID=prot_S-dermatodea_contig1083.562.1|Name=mRNA_S-dermatodea_contig1083.562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
MEGASLTQSERDAIKVTGFGPSAVHFVKNHGGWMFNLIMSHLLFWLFGFT
ALLEYGYTDLNQTAGGQIKSGPSGSGVGIVTTLLMVLSSLVVVAKAVR
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mRNA from alignment at S-dermatodea_contig1083:21017..22239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1083.562.1 ID=mRNA_S-dermatodea_contig1083.562.1|Name=mRNA_S-dermatodea_contig1083.562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1223bp|location=Sequence derived from alignment at S-dermatodea_contig1083:21017..22239+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGGGGCATCGCTGACGCAGTCGGAGCGGGACGCCATTAAGGTGAC
GGGCTTTGGGCCTAGCGCGGTCCACTTCGTGAAAAACCACGGCGGCTGGA
TGTTCAACTTGATCATGTCACACCTCCTCTTCTGGCTTTTCGGCTTCACC
GCGCTGCTTGAGTACGGGTGAGATTTCTTCGCGTGCTTGTATGGGTCTGA
GCCAAGTGGTGCCTCTCTCGTGCGCGCGCGTGCTCGTGGGGCGGGGGAGT
TCCAATAACGTAGTGGCGTTTTTGTGGCGGTGTGTAGAGTGTGTGTGCGT
TTTTGTTGTGTTTGCTGCATCTGGCGTCCATGGCCGTTGGGGGGGGGGGG
GGGGGGCGTTGATTTACCGAAGTTGTCTATAGAGGTTGCCTTCCAACAAC
GGCGAATCATGCTCGTGGCATAGGCTTGTTCTAGCTTTCTCCGTGGGTGA
AACCTGTGGTACGGAGCTGTGGTCGGTGAGCGACAATGTAGGGTTACGGC
TTTGTGCGCGGGGGGTGCTACATAGAGTGCGGCGCATTCGAACACACGCC
GTTTCCGTGCCGCAAGTACTACAGAAGTTTAATTTCGGAACCATGGTTTT
TTGTGTTGGGCCTATTTCTTACATCTTTGGTACCATAGTGGCGGCAATTT
GCATAAACTGAAACTATTCGCTATTTGCAACAACTGTTTTATGTTCAAGG
GACGTTCGTTCCTACAGCTTGGGTACTAAAACGGCGTTGGCACCGGACAT
TCGGTCACCGGCGCTAGTGGCTTATTTTAATATCTGCCCCTTCAGTTATC
TTTATTAATTAATACCGCTCTGTCCACGCTTTCCTATACGATTTTTGAGA
CCGATCGACGTACACTAAACTCGAATATCATACGATTTGAGGCCGATTTT
GCACACTAAACTCCTATAGGAATTTAAGGCCACGTGCTGAAAATAGTAGA
ATTTTCACTCCACGGGCGTAGTAGCCGTGGCTATCTACTAATTTATATAT
ATAAAACGGCTTGTTTCTTATTCCCGTATGTTTTACCACCTCTTTCTCGC
GCGTTTTGTTTTGCTTCTCAATGTTTCTCTCAAACCAACCAAAAAGTTAC
ACGGACCTGAACCAGACCGCCGGCGGGCAGATCAAGTCGGGCCCCTCGGG
CTCCGGGGTGGGCATCGTGACGACGCTTCTCATGGTCCTGTCTTCCTTGG
TTGTGGTCGCCAAAGCGGTGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1083:21017..22239+

>mRNA_S-dermatodea_contig1083.562.1 ID=mRNA_S-dermatodea_contig1083.562.1|Name=mRNA_S-dermatodea_contig1083.562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig1083:21017..22239+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGGGGCATCGCTGACGCAGTCGGAGCGGGACGCCATTAAGGTGAC
GGGCTTTGGGCCTAGCGCGGTCCACTTCGTGAAAAACCACGGCGGCTGGA
TGTTCAACTTGATCATGTCACACCTCCTCTTCTGGCTTTTCGGCTTCACC
GCGCTGCTTGAGTACGGATGGAAGGGGCATCGCTGACGCAGTCGGAGCGG
GACGCCATTAAGGTGACGGGCTTTGGGCCTAGCGCGGTCCACTTCGTGAA
AAACCACGGCGGCTGGATGTTCAACTTGATCATGTCACACCTCCTCTTCT
GGCTTTTCGGCTTCACCGCGCTGCTTGAGTACGGTTACACGGACCTGAAC
CAGACCGCCGGCGGGCAGATCAAGTCGGGCCCCTCGGGCTCCGGGGTGGG
CATCGTGACGACGCTTCTCATGGTCCTGTCTTCCTTGGTTGTGGTCGCCA
AAGCGGTGAGGTTACACGGACCTGAACCAGACCGCCGGCGGGCAGATCAA
GTCGGGCCCCTCGGGCTCCGGGGTGGGCATCGTGACGACGCTTCTCATGG
TCCTGTCTTCCTTGGTTGTGGTCGCCAAAGCGGTGAGG
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