mRNA_S-dermatodea_contig10827.561.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10827.561.1
Unique NamemRNA_S-dermatodea_contig10827.561.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10827.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10827contigS-dermatodea_contig10827:5761..6287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size527
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10827.561.1prot_S-dermatodea_contig10827.561.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10827 5797..6174 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924175.8389072-UTR-S-dermatodea_contig10827:5760..57961622924175.8389072-UTR-S-dermatodea_contig10827:5760..5796Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10827 5761..5796 +
1694079069.8184648-UTR-S-dermatodea_contig10827:5760..57961694079069.8184648-UTR-S-dermatodea_contig10827:5760..5796Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10827 5761..5796 +
1622924175.8589745-UTR-S-dermatodea_contig10827:6174..62871622924175.8589745-UTR-S-dermatodea_contig10827:6174..6287Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10827 6175..6287 +
1694079069.8374658-UTR-S-dermatodea_contig10827:6174..62871694079069.8374658-UTR-S-dermatodea_contig10827:6174..6287Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10827 6175..6287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924175.8509512-CDS-S-dermatodea_contig10827:5796..61741622924175.8509512-CDS-S-dermatodea_contig10827:5796..6174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10827 5797..6174 +
1694079069.8280797-CDS-S-dermatodea_contig10827:5796..61741694079069.8280797-CDS-S-dermatodea_contig10827:5796..6174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10827 5797..6174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10827.561.1

>prot_S-dermatodea_contig10827.561.1 ID=prot_S-dermatodea_contig10827.561.1|Name=mRNA_S-dermatodea_contig10827.561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
MSLSYNRKEVPAKLLFPMLLPCSCRAQCYKACLERCEAVRALWHNPKSRA
GSGSTAFAGLPIMTATIFSKTRRCTCIESRRTGRGRAKSIHQLSSTKVPV
TYIYIDVCVQTCKNSAAWGEILRWA*
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mRNA from alignment at S-dermatodea_contig10827:5761..6287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10827.561.1 ID=mRNA_S-dermatodea_contig10827.561.1|Name=mRNA_S-dermatodea_contig10827.561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=527bp|location=Sequence derived from alignment at S-dermatodea_contig10827:5761..6287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCTTTCTTCCCATCGGCGAGCTAAAGAACATATACATGTCTCTGTCGTA
TAATAGGAAGGAGGTTCCCGCCAAACTTCTTTTTCCGATGCTCCTACCGT
GCTCATGCCGTGCACAGTGCTATAAAGCTTGTCTTGAGCGCTGCGAGGCT
GTTCGTGCCTTATGGCACAACCCGAAGTCCCGCGCGGGTTCTGGCAGCAC
CGCTTTTGCTGGCTTGCCGATCATGACGGCCACAATATTTTCTAAAACAC
GTCGATGTACCTGTATCGAGAGTCGGCGTACAGGGAGGGGAAGAGCGAAA
AGTATACATCAGCTGTCCTCGACCAAGGTTCCGGTAACATATATATATAT
AGATGTGTGCGTACAGACTTGTAAGAACTCAGCTGCGTGGGGGGAAATAT
TGCGTTGGGCATGAGAAGGACGGGTGAGCTTGAGGAAATCCGACCGTACA
TGGATTAAGTGGGACCGCGTTGGTACGGGATCGTCATACAAGTATTCAAG
GGGAAGGGGCGCTCGCTACAACTTGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10827:5761..6287+

>mRNA_S-dermatodea_contig10827.561.1 ID=mRNA_S-dermatodea_contig10827.561.1|Name=mRNA_S-dermatodea_contig10827.561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig10827:5761..6287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTCTGTCGTATAATAGGAAGGAGGTTCCCGCCAAACTTCTTTTTCC
GATGCTCCTACCGTGCTCATGCCGTGCACAGTGCTATAAAGCTTGTCTTG
AGCGCTGCGAGGCTGTTCGTGCCTTATGGCACAACCCGAAGTCCCGCGCG
GGTTCTGGCAGCACCGCTTTTGCTGGCTTGCCGATCATGACGGCCACAAT
ATTTTCTAAAACACGTCGATGTACCTGTATCGAGAGTCGGCGTACAGGGA
GGGGAAGAGCGAAAAGTATACATCAGCTGTCCTCGACCAAGGTTCCGGTA
ACATATATATATATAGATGTGTGCGTACAGACTTGTAAGAACTCAGCTGC
GTGGGGGGAAATATTGCGTTGGGCATGAATGTCTCTGTCGTATAATAGGA
AGGAGGTTCCCGCCAAACTTCTTTTTCCGATGCTCCTACCGTGCTCATGC
CGTGCACAGTGCTATAAAGCTTGTCTTGAGCGCTGCGAGGCTGTTCGTGC
CTTATGGCACAACCCGAAGTCCCGCGCGGGTTCTGGCAGCACCGCTTTTG
CTGGCTTGCCGATCATGACGGCCACAATATTTTCTAAAACACGTCGATGT
ACCTGTATCGAGAGTCGGCGTACAGGGAGGGGAAGAGCGAAAAGTATACA
TCAGCTGTCCTCGACCAAGGTTCCGGTAACATATATATATATAGATGTGT
GCGTACAGACTTGTAAGAACTCAGCTGCGTGGGGGGAAATATTGCGTTGG
GCATGA
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