mRNA_S-dermatodea_contig10826.560.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10826.560.1
Unique NamemRNA_S-dermatodea_contig10826.560.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10826.560.1 vs. uniprot
Match: A0A6H5LAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.260e-7
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:  943 GGDGASGTCDEEL--SSTKEDDMALVVELQDEREGLLAVRERLRREVASLQEEEDELRRSLGLPTVH-------PEPAPPP 1158
            GG  + G+ DE    ++T+++D+ALV E+  EREGLLAVR RLRREV +LQ+EEDELR  LGLP          P P PPP
Sbjct:  855 GGGTSDGSKDETEGPTTTRDEDLALVREMHQEREGLLAVRTRLRREVVTLQDEEDELRLVLGLPPARSELVLATPPPLPPP 935
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BLAST of mRNA_S-dermatodea_contig10826.560.1 vs. uniprot
Match: D7FVQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.590e-6
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:  952 GASGTCD------EELSSTKEDDMALVVELQDEREGLLAVRERLRREVASLQEEEDELRRSLGLPTVHPE 1143
            G  GT D      E  ++T+++D+ALV E+  E EGLLAVR+RLRREV +LQ+EEDELR  LGLP    E
Sbjct:  545 GGGGTSDGNKDETEGPTTTRDEDLALVREMHQESEGLLAVRKRLRREVVTLQDEEDELRLVLGLPPARSE 614
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10826.560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAT0_9PHAE5.260e-753.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVQ0_ECTSI3.590e-654.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10826contigS-dermatodea_contig10826:3609..7153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAT hook-like
Ec32 orthologEc-01_005940.1
Exons5
Model size1159
Cds size1158
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10826.560.1prot_S-dermatodea_contig10826.560.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10826 3609..7153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924175.741646-CDS-S-dermatodea_contig10826:3608..37551622924175.741646-CDS-S-dermatodea_contig10826:3608..3755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 3609..3755 -
1694079069.7533684-CDS-S-dermatodea_contig10826:3608..37551694079069.7533684-CDS-S-dermatodea_contig10826:3608..3755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 3609..3755 -
1622924175.7571666-CDS-S-dermatodea_contig10826:4161..43831622924175.7571666-CDS-S-dermatodea_contig10826:4161..4383Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 4162..4383 -
1694079069.7611322-CDS-S-dermatodea_contig10826:4161..43831694079069.7611322-CDS-S-dermatodea_contig10826:4161..4383Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 4162..4383 -
1622924175.7674541-CDS-S-dermatodea_contig10826:5536..57761622924175.7674541-CDS-S-dermatodea_contig10826:5536..5776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 5537..5776 -
1694079069.7757485-CDS-S-dermatodea_contig10826:5536..57761694079069.7757485-CDS-S-dermatodea_contig10826:5536..5776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 5537..5776 -
1622924175.783853-CDS-S-dermatodea_contig10826:6050..64131622924175.783853-CDS-S-dermatodea_contig10826:6050..6413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 6051..6413 -
1694079069.7889526-CDS-S-dermatodea_contig10826:6050..64131694079069.7889526-CDS-S-dermatodea_contig10826:6050..6413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 6051..6413 -
1622924175.806121-CDS-S-dermatodea_contig10826:6967..71531622924175.806121-CDS-S-dermatodea_contig10826:6967..7153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 6968..7153 -
1694079069.8074956-CDS-S-dermatodea_contig10826:6967..71531694079069.8074956-CDS-S-dermatodea_contig10826:6967..7153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10826 6968..7153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10826.560.1

>prot_S-dermatodea_contig10826.560.1 ID=prot_S-dermatodea_contig10826.560.1|Name=mRNA_S-dermatodea_contig10826.560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=386bp
PSATTSGTRRARAQGKDSHRTGHTADEEGGDDTPGDNSSGGGCDAGGKRS
PQDEPVAVTNSAARGGLSPKPRGTAKGKAAKARAGRGGQSGKGTKRKAAT
APTEASLPNDRDQAGERAATRESGGSARQKRGRGKERAPDSPLGDEQGGG
DCSDRDWDFGGGSCGEVDEEVDVHSAGEADIALRQDEAKEKKNKKSESVG
VCGKRRLQQKGKKPAKAKKARVASAPVNKKGSGGGAKNGRGGGAGSAAGE
DRPHTAKQKGVPSSRKATAAEDPDIASGESGAARKPSARRQKSIPTPRSA
TAKRGNRLGKGKSGGGDGASGTCDEELSSTKEDDMALVVELQDEREGLLA
VRERLRREVASLQEEEDELRRSLGLPTVHPEPAPPP
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mRNA from alignment at S-dermatodea_contig10826:3609..7153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10826.560.1 ID=mRNA_S-dermatodea_contig10826.560.1|Name=mRNA_S-dermatodea_contig10826.560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3545bp|location=Sequence derived from alignment at S-dermatodea_contig10826:3609..7153- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAGCGCAACCACGAGTGGCACGCGGCGGGCACGAGCGCAAGGCAAGGA
TTCCCACCGAACGGGTCATACCGCCGACGAGGAAGGCGGTGATGATACCC
CCGGCGATAATAGCAGCGGTGGAGGTTGCGACGCAGGTGGCAAGCGCAGC
CCTCAAGACGAACCCGTTGCCGTAACGAACTCTGCGGTGCGTACAAAACA
CAGCGTCACCCAGTCGGCTAGTACGCCACGTTTTAGTTGTACCTTGGCAA
AGGGTGGGCGCTATCATCCTCCAGAGGCCCGTACGGACAGAGATATGTAG
GAGCGATATTTGTGCCTTGGTGAGTGCGAGCATCGTCGACTGTGCGAACA
GCCCGCGTGCATGGGTTGCTCCTCAGTTGGCGAGCGGCAGACGCGGAATT
TGTCTTGAGTAGAGGCAAAGAGACAACCGAAAAGCAAAGGAGAGGAGCTC
TTGCGCTCAACGAATTGCGGGTTCTTGGGGGGGGGTTGCCCGTGTCATGT
AGGACCTCACACGAGCTTAGGCCTTACTGTGTGCCGCTTGGAGGTGCTAC
AATAGTCGCCCATCTGTGGAACCCGTTGCCCTGTTGTGTCTCGGACTTCG
CGTGCATAGCCCTCCGATGGCGTGTGCACTTGTGTGGCAACGTCCAACAG
GGGCGCAACGTCGATCAGGCAGTCGTGTCAAGCTCTGAACCTGCCCTGCC
CCCCTCGCGTCTCGCGCCTTGTTCTTACTGCGATACGCAGGCGAGAGGCG
GACTCTCACCCAAACCCCGCGGCACGGCTAAAGGAAAAGCCGCGAAGGCT
CGTGCGGGCCGAGGAGGGCAAAGTGGCAAAGGGACGAAGCGGAAAGCGGC
AACCGCTCCCACCGAAGCCTCTCTTCCCAACGATCGAGATCAAGCGGGGG
AACGCGCTGCGACACGAGAGAGTGGCGGCAGCGCCCGACAGAAGCGAGGG
CGTGGCAAGGAGCGGGCGCCAGACAGCCCTCTCGGAGACGAGCAGGGGGG
GGGCGATTGCTCGGACCGTGATTGGGATTTTGGCGGCGGTAGTTGCGGCG
AGGTTGACGAGGAGGTCGATGTTCACTCGGCGGGGGAAGCAGACATTGCC
TTGGTGAGCTGTGTGTGCGATGAATGCTACGGTAGCGTAAACATCGGCAG
CGTCAAGCGTTCCACAAACCATGCGAAAATGTCACCGTCTTCCTTAACGA
AAGGACTGAGCGAACCCCACGCTGCGGGAGAAATTCACGGCATCCACCCT
TTCCCAGGGGCTTTGAGCCGGTATCTGGGTTGTAAACCAACTCACGCGTC
ACTGTGTTTGCCTATACCCGTTTTCCCCTATCTCATCGGTGTGTCTCGCG
TCCCAACGCCCTTGTTTGTTTTGGTAGCGACAAGACGAAGCCAAAGAGAA
AAAAAACAAAAAATCGGAGAGTGTTGGTGTCTGCGGCAAACGACGCCTCC
AGCAGAAAGGCAAGAAACCGGCAAAGGCTAAAAAGGCGAGGGTGGCTAGT
GCTCCCGTTAACAAGAAGGGCAGCGGCGGCGGTGCAAAAAATGGGAGAGG
AGGTGGCGCCGGGAGCGCCGCGGGAGAGGATAGGCCTCACACCGCCAAAC
AAAAGGGTGTTCCGTCGGTAAGTTCTGCGGTCGGCGAATAATCATTAAGG
TGGACAGATTCGGAGGGATACCTTTCTTTCGGTGTAAATAACTCCCCCGC
AGTTCAACTGAGGCCTACACCCCCCCCCTGCCTTTTAGGTTCGAGGTGGG
GTTGGTCGAGGTAAGATTGGCCTTTTGGCAGGGAGCTGTAAAACTGCTGT
TTATAGGGCACGGGGTGGTTTATGCACTTCGTCCTGTGAGCTCAGAGACC
TCGGTCGAAGAGTCTTGTCTCTCCCCAAAGGGGTGAAAAGCAATATATCC
TTTAGGGCGCCTGCTGAACATTGGATTGTTGTAACGCCCTAGAGCAACCA
TTGGCTTATGAGTGGTATTCCGCCACCAGTACTCATGAGCAGATTATAAT
CTGAGTTTTTCACACATCTACCGTCGTGTATGCTGTGTGCGTCCGGCGCA
TGTGCGTTAGCACGGAGATCAAAGTCCCTCTGCGGTACTTGGAGTATAGT
CACCCCTACTGAATGTGCAACATTTGGTTGCCCGGTATGTCCAATCAATC
CATGGCATATCGGTTTGCGTCGCAAACGCAAGGATGGTGGCGAGCAGCTG
CTATCACCCTTGTGAAACGCAGCCTGGCCGGCGAAAAGCCGACATATCGC
TCCGTCCCGGCATTGTTAGGACGCGTGGTCTATGTCCGTTTGGATACGAA
ATGAGTTTAGTATTAGTACCCCCGCACCCCACAAGCAGAGACACGCGTAT
ATGAGTGCACTGCGATAAAGTGAAGGCTGTGATGTATCTGCTTTTCAAGC
ATGGGACAGTCAGACGAAGACAGTACAGTAGCAATACTGGGAGATAAGAA
GTGGCCCGAAAAGGCGAGAATTCACGTCGATAGATTAGGAAATATATTTT
TGAGCCACCTTTGGCAAAGTAGGAAAGAAGGATTCGCCTTCGGCGATCGA
TCCTGTGGGAACACTCTTCCCCCACCCCTCCCTACCCCATGTATTCCACA
CCACCGTTCGTGTTTTGCCATGAAAATATGCGTGACATTTTGCGTTTATC
TTCCCCCCTTTTGTTTGTTCGTGGGTTGGCTGACGCTTCGCTTCCGTGCA
TCGCAAGACACACTGCTCACTCGCGTCTGTGAATGTGTCCCAACTTCTGC
AAATGATGACGCCGTCGCAGTCGCGAAAGGCAACTGCCGCGGAAGACCCT
GACATCGCGAGCGGAGAGAGCGGTGCCGCGCGAAAGCCAAGCGCGCGACG
GCAGAAGTCGATTCCAACTCCTCGTTCCGCTACCGCAAAACGTGGAAACA
GACTAGGCAAAGGCAAGAGCGGTGGGGGCGATGGCGCGAGTGGTACGTGC
GACGAGGAACTCTCCAGCACGAAAGAAGACGACATGGCCTTGGTACGTTG
GAGAAGCGAATGAGAACATCCCCGAGAGGTTGGGTGAATCTCACGGGTGT
TTGCTATCGTGCGTCGTGTCTCGCTGACGTTGTTGCTGTTGCTCTACGTG
CGGCCGGAAGGGCGCCTCTCGGCTGCTGTGAGCCAAGATTGTACAGCAAC
CGTCTCTCTGGCGTTTTGCATGTTTCTGTGCTAAACCATCCGCGGCAGGT
GCAAACCACACCGCCACAGCTCCTAACCGCTTACAGGCTGCGGTAAACTT
CTGCAGTCTTGCTACATACCACATACCCCGATCAGCTCTCCCCTGCCTTG
AATGGACTGTTGTTGTGCTGGAAGCGACTCGGAGGGAATATCATCCTCTG
TCCTGTTTTTCGTGTTCTGTTATTTTTTCGACCTCTCCGCCTCTGCAGGT
AGTCGAACTTCAAGACGAGCGTGAGGGCCTGCTGGCCGTTCGCGAGAGAC
TTCGCCGAGAGGTGGCATCATTGCAGGAAGAGGAAGACGAGCTGCGACGG
TCGCTGGGGCTGCCCACGGTCCACCCGGAACCGGCACCGCCGCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10826:3609..7153-

>mRNA_S-dermatodea_contig10826.560.1 ID=mRNA_S-dermatodea_contig10826.560.1|Name=mRNA_S-dermatodea_contig10826.560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2316bp|location=Sequence derived from alignment at S-dermatodea_contig10826:3609..7153- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAGCGCAACCACGAGTGGCACGCGGCGGGCACGAGCGCAAGGCAAGGA
TTCCCACCGAACGGGTCATACCGCCGACGAGGAAGGCGGTGATGATACCC
CCGGCGATAATAGCAGCGGTGGAGGTTGCGACGCAGGTGGCAAGCGCAGC
CCTCAAGACGAACCCGTTGCCGTAACGAACTCTGCGCCGAGCGCAACCAC
GAGTGGCACGCGGCGGGCACGAGCGCAAGGCAAGGATTCCCACCGAACGG
GTCATACCGCCGACGAGGAAGGCGGTGATGATACCCCCGGCGATAATAGC
AGCGGTGGAGGTTGCGACGCAGGTGGCAAGCGCAGCCCTCAAGACGAACC
CGTTGCCGTAACGAACTCTGCGGCGAGAGGCGGACTCTCACCCAAACCCC
GCGGCACGGCTAAAGGAAAAGCCGCGAAGGCTCGTGCGGGCCGAGGAGGG
CAAAGTGGCAAAGGGACGAAGCGGAAAGCGGCAACCGCTCCCACCGAAGC
CTCTCTTCCCAACGATCGAGATCAAGCGGGGGAACGCGCTGCGACACGAG
AGAGTGGCGGCAGCGCCCGACAGAAGCGAGGGCGTGGCAAGGAGCGGGCG
CCAGACAGCCCTCTCGGAGACGAGCAGGGGGGGGGCGATTGCTCGGACCG
TGATTGGGATTTTGGCGGCGGTAGTTGCGGCGAGGTTGACGAGGAGGTCG
ATGTTCACTCGGCGGGGGAAGCAGACATTGCCTTGGCGAGAGGCGGACTC
TCACCCAAACCCCGCGGCACGGCTAAAGGAAAAGCCGCGAAGGCTCGTGC
GGGCCGAGGAGGGCAAAGTGGCAAAGGGACGAAGCGGAAAGCGGCAACCG
CTCCCACCGAAGCCTCTCTTCCCAACGATCGAGATCAAGCGGGGGAACGC
GCTGCGACACGAGAGAGTGGCGGCAGCGCCCGACAGAAGCGAGGGCGTGG
CAAGGAGCGGGCGCCAGACAGCCCTCTCGGAGACGAGCAGGGGGGGGGCG
ATTGCTCGGACCGTGATTGGGATTTTGGCGGCGGTAGTTGCGGCGAGGTT
GACGAGGAGGTCGATGTTCACTCGGCGGGGGAAGCAGACATTGCCTTGCG
ACAAGACGAAGCCAAAGAGAAAAAAAACAAAAAATCGGAGAGTGTTGGTG
TCTGCGGCAAACGACGCCTCCAGCAGAAAGGCAAGAAACCGGCAAAGGCT
AAAAAGGCGAGGGTGGCTAGTGCTCCCGTTAACAAGAAGGGCAGCGGCGG
CGGTGCAAAAAATGGGAGAGGAGGTGGCGCCGGGAGCGCCGCGGGAGAGG
ATAGGCCTCACACCGCCAAACAAAAGGGTGTTCCGTCGCGACAAGACGAA
GCCAAAGAGAAAAAAAACAAAAAATCGGAGAGTGTTGGTGTCTGCGGCAA
ACGACGCCTCCAGCAGAAAGGCAAGAAACCGGCAAAGGCTAAAAAGGCGA
GGGTGGCTAGTGCTCCCGTTAACAAGAAGGGCAGCGGCGGCGGTGCAAAA
AATGGGAGAGGAGGTGGCGCCGGGAGCGCCGCGGGAGAGGATAGGCCTCA
CACCGCCAAACAAAAGGGTGTTCCGTCGTCGCGAAAGGCAACTGCCGCGG
AAGACCCTGACATCGCGAGCGGAGAGAGCGGTGCCGCGCGAAAGCCAAGC
GCGCGACGGCAGAAGTCGATTCCAACTCCTCGTTCCGCTACCGCAAAACG
TGGAAACAGACTAGGCAAAGGCAAGAGCGGTGGGGGCGATGGCGCGAGTG
GTACGTGCGACGAGGAACTCTCCAGCACGAAAGAAGACGACATGGCCTTG
TCGCGAAAGGCAACTGCCGCGGAAGACCCTGACATCGCGAGCGGAGAGAG
CGGTGCCGCGCGAAAGCCAAGCGCGCGACGGCAGAAGTCGATTCCAACTC
CTCGTTCCGCTACCGCAAAACGTGGAAACAGACTAGGCAAAGGCAAGAGC
GGTGGGGGCGATGGCGCGAGTGGTACGTGCGACGAGGAACTCTCCAGCAC
GAAAGAAGACGACATGGCCTTGGTAGTCGAACTTCAAGACGAGCGTGAGG
GCCTGCTGGCCGTTCGCGAGAGACTTCGCCGAGAGGTGGCATCATTGCAG
GAAGAGGAAGACGAGCTGCGACGGTCGCTGGGGCTGCCCACGGTCCACCC
GGAACCGGCACCGCCGCCGGTAGTCGAACTTCAAGACGAGCGTGAGGGCC
TGCTGGCCGTTCGCGAGAGACTTCGCCGAGAGGTGGCATCATTGCAGGAA
GAGGAAGACGAGCTGCGACGGTCGCTGGGGCTGCCCACGGTCCACCCGGA
ACCGGCACCGCCGCCG
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