mRNA_S-dermatodea_contig10817.554.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10817.554.1
Unique NamemRNA_S-dermatodea_contig10817.554.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10817.554.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.440e-54
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 1
Query:    1 MVARVHSGVSRDDQVRPPTVVVGDTWQAIPENATIETTRLRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQFVPPETMRAIVQTFESSVNAAAMISSGQGAVLGNPQAVRQPAARSE 354
            MVA VHS  S+DDQVRPPTVVVGDTWQAIPE+ATIET   RVAQTGQS QDRRLLYVEMLKKATAAVSSGVQ VPP+TMRAIVQTFESS+NAAAMISSGQGAVLGNPQAVRQPA RSE
Sbjct:  439 MVALVHSDASKDDQVRPPTVVVGDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVRSE 556          
BLAST of mRNA_S-dermatodea_contig10817.554.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.440e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = 1
Query:  148 QDRRLLYVEMLKKATAAVSSGVQFVPPETMRAIVQTFESSVNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEFGGAKNRRRAQA 417
            QDRRLLYV+M+K+  AAVS+GV+ VPP+T+RAIV+TFESS+NAAA ISSGQG VLGNPQAVRQPA RS+G R KSS+E+GGA+ RRRAQA
Sbjct:  334 QDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGARARRRAQA 423          
BLAST of mRNA_S-dermatodea_contig10817.554.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.330e-22
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    1 MVARVHSGVSRDDQVRPPTVVVGDTWQAIPENATIETTRLRVAQTGQSNQDRRLLYVEMLKKAT 192
            MVA V+S  S+DDQVRPPT +VGDTWQAIPENATIET   RVAQTGQS+QDRRLL+VEMLKK T
Sbjct:  431 MVALVNSDASKDDQVRPPTAMVGDTWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT 494          
BLAST of mRNA_S-dermatodea_contig10817.554.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.060e-19
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   67 GDTWQAIPENATIETTRLRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQFVPPETMRAIVQTFESSVNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEFG 387
            G  W A   N TIE++ +++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPPE +RA+V+ F+  V+ A+ I S  G  + NP  VR P +R  G R+++S E G
Sbjct:   10 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGG 114          
BLAST of mRNA_S-dermatodea_contig10817.554.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.380e-17
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query:   67 GDTWQAIPENATIETTRLRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQFVPPETMRAIVQTFESSVNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEFGGAKNRRRAQANHT 426
            G  W A   N TIE++ +++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPPE +RA+VQ F+  V+ A+ I S  G  + NP  VR P +R  G R+++S + G      R   N T
Sbjct:  310 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKRASRKGGAVVGAARRTYNQT 427          
BLAST of mRNA_S-dermatodea_contig10817.554.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.030e-17
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   67 GDTWQAIPENATIETTRLRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQFVPPETMRAIVQTFESSVNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEFG 387
            G  W A   N TIE++ +++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPPE +RA+V+ F+  V+ A+ I S  G  + NP  VR P +R  G R+++S E G
Sbjct:  755 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGG 859          
BLAST of mRNA_S-dermatodea_contig10817.554.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.310e-16
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   67 GDTWQAIPENATIETTRLRVAQTGQSNQDRRLLYVEMLKKATAAVSSGVQFVPPETMRAIVQTFES-SVNAAAMISSGQGAVLGNPQAVRQPAARSEGTREKSSVEFG 387
            G  W A   N TIE++ +++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPPE +RA+V+ F+   V+ A+ I S  G  + NP  VR P +R  G R+++S E G
Sbjct:  109 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGG 214          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10817.554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE1.440e-5488.98MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JU34_9PHAE4.440e-3375.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBU5_9PHAE5.330e-2279.69SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JCK5_9PHAE4.060e-1946.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FLA8_ECTSI1.380e-1744.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJG6_9PHAE5.030e-1746.73SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JMX3_9PHAE2.310e-1646.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10817contigS-dermatodea_contig10817:1138..1566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_006690.1
Exons1
Model size429
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924175.4707875-CDS-S-dermatodea_contig10817:1137..15661622924175.4707875-CDS-S-dermatodea_contig10817:1137..1566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10817 1138..1566 -
1694079069.5818446-CDS-S-dermatodea_contig10817:1137..15661694079069.5818446-CDS-S-dermatodea_contig10817:1137..1566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10817 1138..1566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10817.554.1prot_S-dermatodea_contig10817.554.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10817 1138..1566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10817.554.1

>prot_S-dermatodea_contig10817.554.1 ID=prot_S-dermatodea_contig10817.554.1|Name=mRNA_S-dermatodea_contig10817.554.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
MVARVHSGVSRDDQVRPPTVVVGDTWQAIPENATIETTRLRVAQTGQSNQ
DRRLLYVEMLKKATAAVSSGVQFVPPETMRAIVQTFESSVNAAAMISSGQ
GAVLGNPQAVRQPAARSEGTREKSSVEFGGAKNRRRAQANHT*
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mRNA from alignment at S-dermatodea_contig10817:1138..1566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10817.554.1 ID=mRNA_S-dermatodea_contig10817.554.1|Name=mRNA_S-dermatodea_contig10817.554.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=429bp|location=Sequence derived from alignment at S-dermatodea_contig10817:1138..1566- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAGCGCGAGTCCACAGCGGCGTGTCTAGAGACGACCAGGTACGCCC TCCCACGGTAGTGGTGGGTGACACTTGGCAAGCAATCCCGGAGAATGCGA CCATAGAGACCACGCGCTTGAGGGTTGCGCAGACAGGGCAAAGTAATCAG GACCGCCGGCTCCTTTATGTGGAGATGTTGAAGAAGGCCACCGCCGCCGT GAGCTCTGGGGTGCAGTTTGTCCCCCCTGAGACTATGCGTGCCATCGTGC AGACTTTCGAAAGTAGCGTGAACGCCGCGGCGATGATTTCTTCGGGGCAG GGGGCTGTACTGGGCAACCCACAAGCTGTGCGCCAACCAGCTGCTAGAAG TGAGGGTACTAGAGAGAAGTCTAGCGTGGAGTTCGGCGGGGCAAAGAATA GGAGGCGAGCGCAGGCCAACCACACTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10817:1138..1566-

>mRNA_S-dermatodea_contig10817.554.1 ID=mRNA_S-dermatodea_contig10817.554.1|Name=mRNA_S-dermatodea_contig10817.554.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig10817:1138..1566- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAGCGCGAGTCCACAGCGGCGTGTCTAGAGACGACCAGGTACGCCC
TCCCACGGTAGTGGTGGGTGACACTTGGCAAGCAATCCCGGAGAATGCGA
CCATAGAGACCACGCGCTTGAGGGTTGCGCAGACAGGGCAAAGTAATCAG
GACCGCCGGCTCCTTTATGTGGAGATGTTGAAGAAGGCCACCGCCGCCGT
GAGCTCTGGGGTGCAGTTTGTCCCCCCTGAGACTATGCGTGCCATCGTGC
AGACTTTCGAAAGTAGCGTGAACGCCGCGGCGATGATTTCTTCGGGGCAG
GGGGCTGTACTGGGCAACCCACAAGCTGTGCGCCAACCAGCTGCTAGAAG
TGAGGGTACTAGAGAGAAGTCTAGCGTGGAGTTCGGCGGGGCAAAGAATA
GGAGGCGAGCGCAGGCCAACCACACTTGAATGGTAGCGCGAGTCCACAGC
GGCGTGTCTAGAGACGACCAGGTACGCCCTCCCACGGTAGTGGTGGGTGA
CACTTGGCAAGCAATCCCGGAGAATGCGACCATAGAGACCACGCGCTTGA
GGGTTGCGCAGACAGGGCAAAGTAATCAGGACCGCCGGCTCCTTTATGTG
GAGATGTTGAAGAAGGCCACCGCCGCCGTGAGCTCTGGGGTGCAGTTTGT
CCCCCCTGAGACTATGCGTGCCATCGTGCAGACTTTCGAAAGTAGCGTGA
ACGCCGCGGCGATGATTTCTTCGGGGCAGGGGGCTGTACTGGGCAACCCA
CAAGCTGTGCGCCAACCAGCTGCTAGAAGTGAGGGTACTAGAGAGAAGTC
TAGCGTGGAGTTCGGCGGGGCAAAGAATAGGAGGCGAGCGCAGGCCAACC
ACACTTGA
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