mRNA_S-dermatodea_contig1081.551.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1081.551.1
Unique NamemRNA_S-dermatodea_contig1081.551.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1081.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1081contigS-dermatodea_contig1081:13296..15023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size286
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1081.551.1prot_S-dermatodea_contig1081.551.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1081 13296..15023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924175.1612897-CDS-S-dermatodea_contig1081:13295..133381622924175.1612897-CDS-S-dermatodea_contig1081:13295..13338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1081 13296..13338 -
1694079069.3456872-CDS-S-dermatodea_contig1081:13295..133381694079069.3456872-CDS-S-dermatodea_contig1081:13295..13338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1081 13296..13338 -
1622924175.1718993-CDS-S-dermatodea_contig1081:13779..139351622924175.1718993-CDS-S-dermatodea_contig1081:13779..13935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1081 13780..13935 -
1694079069.3563142-CDS-S-dermatodea_contig1081:13779..139351694079069.3563142-CDS-S-dermatodea_contig1081:13779..13935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1081 13780..13935 -
1622924175.1825535-CDS-S-dermatodea_contig1081:14937..150231622924175.1825535-CDS-S-dermatodea_contig1081:14937..15023Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1081 14938..15023 -
1694079069.3645225-CDS-S-dermatodea_contig1081:14937..150231694079069.3645225-CDS-S-dermatodea_contig1081:14937..15023Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1081 14938..15023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1081.551.1

>prot_S-dermatodea_contig1081.551.1 ID=prot_S-dermatodea_contig1081.551.1|Name=mRNA_S-dermatodea_contig1081.551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=95bp
FCRGYGSSRNGGKGLPAALLKMLEDRDRRFSGLCEDLATLATKNSDSPFR
RDKRIDRRHTARRRAAEMLLGQISAAGEEARMHLHRLSHEVQRLE
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mRNA from alignment at S-dermatodea_contig1081:13296..15023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1081.551.1 ID=mRNA_S-dermatodea_contig1081.551.1|Name=mRNA_S-dermatodea_contig1081.551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1728bp|location=Sequence derived from alignment at S-dermatodea_contig1081:13296..15023- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCTGCAGAGGGTATGGTTCGTCGAGAAATGGAGGGAAAGGGCTCCCAGC
AGCGCTTCTCAAGATGCTGGAAGACAGAGACCGCAGGTTGGCACTGAACA
TGTAGCGCGGCTGCCTCGATCTGAGTTATTGATGGCTTAGGGTGTGTCTC
AACCCGAGAAAAAAACATAAATCGAAAACCGAAATTCCTGGAAACTTGGC
TTTTTATATGATTGGCTAAGAATTGTGGGATGCTTTTTGTTTTTCCGTTT
TCGCGCAGCTTCCTGGCTAGGGATGCCAAAGACGTAAATGGCAGGCCGCG
GAACGCACAGCACACCGAATAACGCGGTGGAACTGCGAAGCGAAACAACA
GCGCGGTTTCCACAGATTTACATGGCTCATCACAACATGGCAGGCGGCAG
AGAGTCCCGCGAGCGCCCTGTTTCTCCCCCTCACTAATATCTGAAGCCCT
AGCTATTGTCCGGAAGGGCTCCCCTTCCAGTTTCTAGCTCACCTATGCTG
CATCGATGAAGCTACAGCATTAAGAAAAGAAAAAAAACTCATACTGCAGA
GCTTGGGCAGCAGCTTGGGCACCGCGCCGACTAACACAAGGCGCCAAAAC
CCCCCCGCCGACTGCCCACACGCCGCAGTCCATCCCGCCGCGACCCCGCC
CGCTGCGGCCCAGGCTGTTGCAACTACTCGAGCGCAGTTCCTCGGCCCCC
ATGACAACAGCACTAAATATATGACAGCAGCAAGAAACTATATACTCGCA
TCGCGATGAATAATCGCCGTTGATTGTTTGCCTCCGATTTGTTTGGTTTC
AAATTTTGTTTTCGGATGCAGATGGCCGAAATCTGAAAATGCCAGGGGTG
CCAGGAATTTCCTTTTTTCGTATGAATAGTCGTTTTGTCCTTTTTCTGTT
GAGACATGGCCTTAGACTCGCCGATTCATCTCGTCGCGCAGCAGAACAAA
ACACGCATGTCCCACAAACAAGATACGGAAGTATCGCACGAGCACATCCT
AAAAACACAAGCAAAAGCACAGAACCACGGACCCATCCACGAGCCCATGC
ACACCTGCCGCCTTGATCCCATAATACCCCACGAAAAGGTTTTCCGGTTT
ATGCGAGGACCTGGCAACGTTGGCCACCAAGAACTCTGATTCGCCGTTCC
GCCGTGACAAGAGGATCGACAGAAGGCACACTGCGCGAAGGAGGGCCGCC
GAAATGTTGTTAGGACAAATATCGGCAGCGGGAGAGGAAGCCAGGTAACG
AGTCGACGCGAGTACCACCGAAGGTCGGAAAAGGCCGGTCTAACGGAGAG
ACTGGGTTCAATCAATCGTATTTCTCAGTTGCGTTACCTCCCCACATCCG
GGCTGTTTGGGAAGCGGGACGGCAAAGTGGGTTTCCGTCTACTACGCATT
CTTATCGCAAGAGCCTCGAAGGATCATCGATTTCGTATCACAGGTGGAGG
ATAGGCGAGGGAAGAGAGAGAAGGCGTTACATGTCTTCCAAACAAAGTCG
AACAGTTCACGATGCCGTGAAAGTACACACTCTGCCGGACAAGTTATGGG
CATTATGAAGGCACGAGCGTGTTTACGATGCTTACCGTGATTCCAGAGTA
GAACATCCTTATTACGCGACAAGCACCTCGTGACCCGTGCTACTCGCCAC
ATTCCCCATGCCCCGCGCCCCTCACCGCTGATCAGAATGCACCTGCACCG
CCTCTCACATGAGGTACAGCGCCTGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1081:13296..15023-

>mRNA_S-dermatodea_contig1081.551.1 ID=mRNA_S-dermatodea_contig1081.551.1|Name=mRNA_S-dermatodea_contig1081.551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at S-dermatodea_contig1081:13296..15023- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCTGCAGAGGGTATGGTTCGTCGAGAAATGGAGGGAAAGGGCTCCCAGC
AGCGCTTCTCAAGATGCTGGAAGACAGAGACCGCAGTTCTGCAGAGGGTA
TGGTTCGTCGAGAAATGGAGGGAAAGGGCTCCCAGCAGCGCTTCTCAAGA
TGCTGGAAGACAGAGACCGCAGGTTTTCCGGTTTATGCGAGGACCTGGCA
ACGTTGGCCACCAAGAACTCTGATTCGCCGTTCCGCCGTGACAAGAGGAT
CGACAGAAGGCACACTGCGCGAAGGAGGGCCGCCGAAATGTTGTTAGGAC
AAATATCGGCAGCGGGAGAGGAAGCCAGGTTTTCCGGTTTATGCGAGGAC
CTGGCAACGTTGGCCACCAAGAACTCTGATTCGCCGTTCCGCCGTGACAA
GAGGATCGACAGAAGGCACACTGCGCGAAGGAGGGCCGCCGAAATGTTGT
TAGGACAAATATCGGCAGCGGGAGAGGAAGCCAGAATGCACCTGCACCGC
CTCTCACATGAGGTACAGCGCCTGGAGAATGCACCTGCACCGCCTCTCAC
ATGAGGTACAGCGCCTGGAG
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