mRNA_S-dermatodea_contig10803.547.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10803.547.1
Unique NamemRNA_S-dermatodea_contig10803.547.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A482RXP7_9ARCH (Class I SAM-dependent methyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXP7_9ARCH)

HSP 1 Score: 103 bits (256), Expect = 7.650e-24
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 3 
Query:  144 SSDSAPAGSAMTLDGPVPYAGNILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPEL 431
            SS  A  G   +++GP  Y G+ILD+P +LW +D WTAE+EEEA + +  +G  +S YW+ KYE++A   W  FY+R+  +FFKDRHYL  VFPEL
Sbjct:   58 SSPPAEQGKQFSIEGPASYQGDILDDPELLWSEDVWTAEKEEEAKQRLQEQGANVSDYWRGKYEQQAGVYWHKFYKRHLDHFFKDRHYLHVVFPEL 153
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A6H5JI62_9PHAE (tRNA N(3)-methylcytidine methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI62_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.600e-22
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 3 
Query:  261 EEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPELAETDADRALAE 464
            +E+EA++ V  KGPPLSK+W+DKYEREAR+SW+ FY RN+ NFFKDRHYL  VFPEL ET AD  L++
Sbjct:   24 QEKEALQSVKGKGPPLSKFWRDKYEREARKSWDLFYGRNAGNFFKDRHYLGTVFPELTETGADLELSQ 91
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A7S2MQY1_9STRA (tRNA N(3)-methylcytidine methyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQY1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.480e-21
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 3 
Query:  174 MTLDGP--VPYAGNILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPEL 431
             T+DGP  +    ++LD+PN+LW +D W  +  EEA+  V  +GPPL +     YER+A+++W+ FY+RN  NFFKDRHYLA+V+PEL
Sbjct:   36 FTVDGPPSLGEGASVLDSPNMLWCEDTWDPKRVEEAIACVEKQGPPLREAMVRFYERDAKKNWDMFYKRNGTNFFKDRHYLARVYPEL 123
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A6A5AUN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AUN7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.140e-19
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 3 
Query:  210 ILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPELAETDADRA 455
            I+D+  +L  DD WT E EE A  L+      ++ +W+ KYE+EA +SW+ FY+RNS NF+KDRHYL  VFP+LA  D+D A
Sbjct:   20 IIDDEGMLVADDEWTEEREELAKSLLDQDKKLVAPFWQSKYEKEAAKSWDLFYKRNSTNFYKDRHYLHVVFPDLAPKDSDSA 101
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: W4H9Y5_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9Y5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.470e-18
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 3 
Query:  210 ILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPELAETDADRA 455
            I+D+  +L  DD WT E EE A  L+      ++ +W+ KYE+EA +SW+ FY+RNS NF+KDRHYL  VFP+LA  D+D A
Sbjct:   20 IIDDEGLLVADDEWTEEREELAKSLLDQDKKLVAPFWQSKYEKEAAKSWDLFYKRNSTNFYKDRHYLHVVFPDLAPKDSDSA 101
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A2D4C7Y2_PYTIN (tRNA N(3)-methylcytidine methyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7Y2_PYTIN)

HSP 1 Score: 86.7 bits (213), Expect = 1.830e-17
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 3 
Query:  210 ILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPELAETDAD 449
            +L++P+ +  +D WT E EE A  L+A     +  +W++KYE+ A +SW+ FY++NS NF+KDRHYL  VFP+L + DAD
Sbjct:   25 VLEDPDKVVCEDEWTEEREELAKELLARDTSTIPTFWQEKYEKXAAKSWDKFYKKNSTNFYKDRHYLHIVFPDLDKNDAD 104
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A024U408_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U408_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.470e-16
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3 
Query:  210 ILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPELAETDAD 449
            ++D+  +L  DD WT E EE A  L+      +  +W++KYE+EA +SW+ FY+RNS NF+KDRHYL  VF +LA  + D
Sbjct:   20 VIDDDGLLVADDEWTEEREELAKALLEQDKKVVPPFWQNKYEKEAAKSWDLFYKRNSTNFYKDRHYLHLVFSDLAPKEGD 99
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A067C535_SAPPC (tRNA N(3)-methylcytidine methyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C535_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 4.610e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 3 
Query:  210 ILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPELA 434
            IL + + L +DD WT E E  A+ L+      +  +W++KYEREA +SW+ FY+RNS NF+KDRHYL  VFP+LA
Sbjct:   18 ILKDEDALIIDDEWTPEREALALELLNQDKKVVPAFWQEKYEREAAKSWDLFYKRNSTNFYKDRHYLHVVFPDLA 92
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A8K1CBA0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBA0_PYTOL)

HSP 1 Score: 83.2 bits (204), Expect = 4.650e-16
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 3 
Query:  210 ILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPELAETDAD 449
            +L+  + ++ +D WT E E  A  L+      + +YW++KYEREA +SW+ FY+RN+ NF+KDRHYL  VFP+L   ++D
Sbjct:   48 VLEEEDAIYAEDTWTEERERLARELLDQDTSSIPEYWQNKYEREAAKSWDKFYKRNTTNFYKDRHYLHLVFPDLNVNESD 127
[Close]
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Match: A0A3R6ZDR6_9STRA (Methyltransf_25 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZDR6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.160e-16
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 3 
Query:  210 ILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWK-DKYEREARRSWENFYRRNSKNFFKDRHYLAKVFPELAETDADRA 455
            I+D+  +L  DD WT E EE A  L+      ++ +W+  KYE+EA +SW+ FY+RNS NF+KDRHYL  VFP+LA  D+D A
Sbjct:   59 IIDDEGMLVADDEWTEEREELAKSLLDQDKKLVAPFWQIGKYEKEAAKSWDLFYKRNSTNFYKDRHYLHVVFPDLAPKDSDSA 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10803.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482RXP7_9ARCH7.650e-2450.00Class I SAM-dependent methyltransferase n=1 Tax=ar... [more]
A0A6H5JI62_9PHAE6.600e-2266.18tRNA N(3)-methylcytidine methyltransferase n=2 Tax... [more]
A0A7S2MQY1_9STRA2.480e-2148.86tRNA N(3)-methylcytidine methyltransferase n=1 Tax... [more]
A0A6A5AUN7_9STRA2.140e-1950.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4H9Y5_9STRA3.470e-1850.00Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A2D4C7Y2_PYTIN1.830e-1746.25tRNA N(3)-methylcytidine methyltransferase n=1 Tax... [more]
A0A024U408_9STRA2.470e-1646.25Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A067C535_SAPPC4.610e-1650.67tRNA N(3)-methylcytidine methyltransferase n=2 Tax... [more]
A0A8K1CBA0_PYTOL4.650e-1643.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R6ZDR6_9STRA5.160e-1649.40Methyltransf_25 domain-containing protein n=5 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10803contigS-dermatodea_contig10803:3329..7022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue4.6e-20
Seed eggNOG ortholog2880.D7G2E0
KEGG rclassRC00003,RC00113,RC00392,RC01244
KEGG koko:K00599
KEGG ReactionR02671,R02912,R03955,R04939
EggNOG free text desc.tRNA (cytosine) methyltransferase activity
EggNOG OGsKOG2361@1,KOG2361@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-00_005800.1
Exons4
Model size465
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10803.547.1prot_S-dermatodea_contig10803.547.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10803 3329..6987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.8366303-CDS-S-dermatodea_contig10803:3328..33871622924174.8366303-CDS-S-dermatodea_contig10803:3328..3387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10803 3329..3387 -
1694079069.1099513-CDS-S-dermatodea_contig10803:3328..33871694079069.1099513-CDS-S-dermatodea_contig10803:3328..3387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10803 3329..3387 -
1622924174.8503003-CDS-S-dermatodea_contig10803:5117..52591622924174.8503003-CDS-S-dermatodea_contig10803:5117..5259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10803 5118..5259 -
1694079069.1273293-CDS-S-dermatodea_contig10803:5117..52591694079069.1273293-CDS-S-dermatodea_contig10803:5117..5259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10803 5118..5259 -
1622924174.8591578-CDS-S-dermatodea_contig10803:6031..62131622924174.8591578-CDS-S-dermatodea_contig10803:6031..6213Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10803 6032..6213 -
1694079069.135043-CDS-S-dermatodea_contig10803:6031..62131694079069.135043-CDS-S-dermatodea_contig10803:6031..6213Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10803 6032..6213 -
1622924174.8678377-CDS-S-dermatodea_contig10803:6941..69871622924174.8678377-CDS-S-dermatodea_contig10803:6941..6987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10803 6942..6987 -
1694079069.1432233-CDS-S-dermatodea_contig10803:6941..69871694079069.1432233-CDS-S-dermatodea_contig10803:6941..6987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10803 6942..6987 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.8761926-UTR-S-dermatodea_contig10803:6987..70221622924174.8761926-UTR-S-dermatodea_contig10803:6987..7022Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10803 6988..7022 -
1694079069.1535623-UTR-S-dermatodea_contig10803:6987..70221694079069.1535623-UTR-S-dermatodea_contig10803:6987..7022Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10803 6988..7022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10803.547.1

>prot_S-dermatodea_contig10803.547.1 ID=prot_S-dermatodea_contig10803.547.1|Name=mRNA_S-dermatodea_contig10803.547.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
MVEHQTAVELYLRLSGVSEVRDGDISDATAAVGEGDSSDSAPAGSAMTLD
GPVPYAGNILDNPNVLWMDDRWTAEEEEEAVRLVAAKGPPLSKYWKDKYE
REARRSWENFYRRNSKNFFKDRHYLAKVFPELAETDADRALAE
back to top

mRNA from alignment at S-dermatodea_contig10803:3329..7022-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10803.547.1 ID=mRNA_S-dermatodea_contig10803.547.1|Name=mRNA_S-dermatodea_contig10803.547.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3694bp|location=Sequence derived from alignment at S-dermatodea_contig10803:3329..7022- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGAGCTGCCTTCTGAGCTTGTGAGGGTCTGCTGATGGTGGAGCATCAA
ACAGCCGTTGAGCTATACCTTCGGTTATCAGGTTGGTTGAGTAGTGCAAC
CTCATCCATCCGAGGATTTGGCTGCGTGCTCGTGTCTTTACACCCTCCCT
CACCCCTGCATATTGCACACTCCGCAGTCACACACCCAAAAGCGCAGGCA
GGGCCACAGGCCCCCGTCGTGTGCAGCACAGACGCATAAACCACAACAGC
TGCGGGGAAGTCTGTAGTTCGCTAAGGATGCGGTGTGCCCATGTGTAAAG
CGCACGGTAGACTCTGTGGCGTACTGTATCCCAATGCTGACGGCCATCTG
ATTCGTATTCATGTTTAGTTTACACTGCAGGCTTTGACGCAACATGTCAT
CTGTCATACGAGCTCGACCCGTGGACATATGTGTATTACTTCGAAGTATG
ATGTGTATTTACCGCGGTATGCATGTCACAGCTCACAAACCGGCGTGCCC
GCTTGCCCACCAGCATGCACACCGCCTCTCCAAAAGAGTGTGCTCGAGAT
TCGGCCACCCTTGTAGCATGGTACTGTACACAGTCCAGAAACCATTTCAG
CATACCGCACACTGTTACTACTCCAGCCGGCGACGACGCGTTAGATAGAG
CAAATAAATGACAAGGCCGGCTATCTATTATACCTTGCATGGACGATATC
GTAACATAGTCGAGAACCCATCATTGCAGCATAGCCGGCCAACGACTGAT
CTGAGCAAACGACGCGACCATTCGCCCGCTCCTTGCGTTGTTTGGTACCG
GTATCCTAGGCGTATCCGAGGTTCGGGATGGAGATATCAGCGATGCCACC
GCTGCAGTGGGAGAGGGTGATAGTTCGGACTCCGCGCCGGCGGGCAGCGC
GATGACGCTGGACGGGCCGGTTCCGTACGCTGGAAACATTTTGGATAACC
CCAACGTTTTGTGGATGGACGACCGATGGACAGCTGAGGAGGTGTGTGGT
ATTCATGAATGGTAGGCCGTAGGGCAACTGCTGCTGCTGGTGTTGTTGTT
ATTGCTGTTGCTGGTGTTGGTGGTGGTGTAGGTGGTGGTGGTGTGTCGTG
GTGGTGCTATTGCTGTTGGTGGTGTCGGTGGTCCTTTTCCGAATTACCTC
TGTGGTGGCCAGGGATCGATCGACGATCCCATCTCTCTTATCCCTGGTGC
TTGCCTTACATTTTAATTTGGCACTGTTGGGTTCGTTCACCGCTCCTGCA
GCTAGCTCTCTTGCCGATTTATCGGATTTTGCGATTGTGTGCTTGTGTTA
CTCATGACAGAAGCTCTGCGAGATGCACGAAGCGCCCTGCATGTGTTTCA
TGTAGCGTTGTGTGAATTATTTGCTGTACTATGTACTACTGTATAAATAT
ATAGGTATTTGCCTAGGTTTTTCCGTTTATCGATTTATCATCTGACCACG
AGCGGGATAGTCCATCATTGGCATGCCGGTCGGTTGTAGGTGTGACAATC
AATATCTATAAAGCAACCAATCAACCAATCAACTAGCGCATCATCCCAGT
TATGGGACGTGCTGAGACTTATTCGCCACGCCCATGGACAGTTTATTTTT
GCTACAGAGACCCAAAGCGCAGTACAGCATTGTGTTCGGCAAGATCTAGT
CCTGGGGGAGCTGTGTTTGACAAATGGTATCCTAGCGGCGTGCGTCCTTA
GGGCAGGACCTGTGCGCCAATAACGATATGCGCGCGCGTTTGGTGCCTTT
TTTGGTTTGAAAGGAGGAAGAGGCGGTTCGATTAGTGGCGGCGAAGGGGC
CTCCGCTGTCTAAGTACTGGAAAGACAAGTACGAACGAGAGGCGAGGAGA
AGCTGGGAAAATTTCTACCGGAGGAACTCGAAGAATTTTTTCAAGGACCG
CCACTGTGAGCTACACGCGAGAGAGCTTTCGCTGGACTGCAAAGTAGTTT
TGTGGGTGACGGTGTCGATTATTGATTTTGTTGCTTTATTGATTATCGCA
TTATCAACCGACCGGCCCGCCAGTGGTGGCCAATCCCGCTGGTGATCAGA
TGGGAAATCGAAGAATCTGCGGAGTTATCATGTTATACATATGGTAAGAA
GGAGTTGACAAAACGGTCGGAACCAGGGAGAGCATGGACATACCTCGGAA
CATGGGTCTGCTAAACCCATCCCCCTCTCCTACAGCCGAGCCTGGTCCGG
CGAATACCCGGCATGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCTATG
GTCTAACGACTACGGCATGCACGATCAATGAGTACGCCCCTCTCCTACAG
CAAGGGCTCGTGTGTACGCATGTATGTATGGATAAGCAAGTGATTTCGTA
ATTTGGCATCGTGGTGCAGCTGTGATAGCAAGCTGTTGACGTTTTCGTTC
TGCCCGTTCTTCTTTTCTTACGTACATGTCTTCACTCTTAGCTCCCGGCA
CCTGAATCTGACCGCAAGGCTGGTCGGATTCAGGCGATCAGCTATACGTG
TGCTATTAATAATCAATCAACCAATTAATCAACAAACCAATCAATCCCCG
GCAACGTTAGCAGTAAGAACGTGCTGGAGCCTGCTCATTGGATGCGCGCA
TGGTGTGGGACACGTAGACTTCCGCTGGAGCCGTACTGTTTTTTCCTGCG
GCTGGCAACTGAGCACGAGGCCTGAAAATTGCGACCCCCCTCCCCGCCCG
CGCGCCTGCACCCGCCGAACCTGATGGGTTTGTTGGGGCGCCCTATAGAG
CAATCAGTGACTTCGTATTGGTACTGCGTCTAGAGTGCTCATGAGGAGAT
ACATAGTCTGAGTGTATCACACATACCTGGTATACCGTTGTGTATGTTGC
GTGCGTGCGGCGTTTGCGATCGCACGTAGATCAGATACCCTTTTGGGTAC
TACTTGGAGTAGTGTCATAGTCACGCCTACTGATACTGAATGTGGAGCAT
TTGGTTAGTGGTTAGTTGCCCGGTATGACCAACCAACCCATGGCATGTCG
GTTTGGCGTCGCGAACGCAAGAGTTATGGCTGTTATAGCAGCTGGTATTA
TCATTGTGAAACGCAGCCTGGCCGGCGAAAACTGGCATATCGCTCCGTCC
CGGCGCTGTTGGGACGTGTGGTCTATGCCCGTCCATCTAGATACAACATG
CTTTGACATAACCCACCCACACACACACACACACCCGATGCTGACGCAGA
TGCCCCCACTCCTAATTGGAGTAGACATAGAAGGGAAAGCCTGTTTCAGC
CACCTTTGGCAAAGTTGAAAGGAACGACTAGCCATTGGCGGTCGATCCTG
CTGAAACAATGATGCACCGTCCTTCCGAGGAAGCGTGGTCAATGGTCTAA
CAGCTAAGGCATGCAACACTTGAGTACCCCCCGCCCCGCCCCCCCCCCCC
CCCCCACCCCCCCCACCCCCCACCCCCCCACCCCACTCCTCCCCCTCCAC
GCACACCNNNNNNNNNNTGCGCCAATCAGAGCCAAACCACATCGTCCTCC
ATCACGCCCCATTTCTCGGCTTTCCAAGTTCTCGCCCCCCCCCCCCCCCC
CCCCCCCCCCTCTCCCCCCCCCCCCCCCCCCCACCCCCTCCCTCCTCACA
CCATCTCGCTTTGCATACGCGTATTTCAAGACCAGACCTCGCGAAAGTGT
TTCCGGAATTGGCGGAGACGGACGCCGATCGCGCCTTGGCAGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10803:3329..7022-

>mRNA_S-dermatodea_contig10803.547.1 ID=mRNA_S-dermatodea_contig10803.547.1|Name=mRNA_S-dermatodea_contig10803.547.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig10803:3329..7022- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGAGCATCAAACAGCCGTTGAGCTATACCTTCGGTTATCAGATGG
TGGAGCATCAAACAGCCGTTGAGCTATACCTTCGGTTATCAGGCGTATCC
GAGGTTCGGGATGGAGATATCAGCGATGCCACCGCTGCAGTGGGAGAGGG
TGATAGTTCGGACTCCGCGCCGGCGGGCAGCGCGATGACGCTGGACGGGC
CGGTTCCGTACGCTGGAAACATTTTGGATAACCCCAACGTTTTGTGGATG
GACGACCGATGGACAGCTGAGGAGGCGTATCCGAGGTTCGGGATGGAGAT
ATCAGCGATGCCACCGCTGCAGTGGGAGAGGGTGATAGTTCGGACTCCGC
GCCGGCGGGCAGCGCGATGACGCTGGACGGGCCGGTTCCGTACGCTGGAA
ACATTTTGGATAACCCCAACGTTTTGTGGATGGACGACCGATGGACAGCT
GAGGAGGAGGAAGAGGCGGTTCGATTAGTGGCGGCGAAGGGGCCTCCGCT
GTCTAAGTACTGGAAAGACAAGTACGAACGAGAGGCGAGGAGAAGCTGGG
AAAATTTCTACCGGAGGAACTCGAAGAATTTTTTCAAGGACCGCCACTGA
GGAAGAGGCGGTTCGATTAGTGGCGGCGAAGGGGCCTCCGCTGTCTAAGT
ACTGGAAAGACAAGTACGAACGAGAGGCGAGGAGAAGCTGGGAAAATTTC
TACCGGAGGAACTCGAAGAATTTTTTCAAGGACCGCCACTACCTCGCGAA
AGTGTTTCCGGAATTGGCGGAGACGGACGCCGATCGCGCCTTGGCAGAGA
CCTCGCGAAAGTGTTTCCGGAATTGGCGGAGACGGACGCCGATCGCGCCT
TGGCAGAG
back to top