mRNA_S-dermatodea_contig10801.546.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10801.546.1
Unique NamemRNA_S-dermatodea_contig10801.546.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10801.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10801contigS-dermatodea_contig10801:3267..5896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-11_005960.1
Exons2
Model size311
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.7212586-CDS-S-dermatodea_contig10801:3268..33791622924174.7212586-CDS-S-dermatodea_contig10801:3268..3379Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10801 3269..3379 -
1694079069.0666394-CDS-S-dermatodea_contig10801:3268..33791694079069.0666394-CDS-S-dermatodea_contig10801:3268..3379Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10801 3269..3379 -
1622924174.7331743-CDS-S-dermatodea_contig10801:5698..58961622924174.7331743-CDS-S-dermatodea_contig10801:5698..5896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10801 5699..5896 -
1694079069.076678-CDS-S-dermatodea_contig10801:5698..58961694079069.076678-CDS-S-dermatodea_contig10801:5698..5896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10801 5699..5896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10801.546.1prot_S-dermatodea_contig10801.546.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10801 3269..5896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10801.546.1

>prot_S-dermatodea_contig10801.546.1 ID=prot_S-dermatodea_contig10801.546.1|Name=mRNA_S-dermatodea_contig10801.546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
PRCTTQPVYGPLPEGDSDKFCARYCAAHKNPGMVSQKRARCTTNRCYRRA
SYGLPGEDGKFCIEHKLEGMVKMTQVQRIRRPTVPHSTPANELPGSQHPA
RGT
back to top

mRNA from alignment at S-dermatodea_contig10801:3267..5896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10801.546.1 ID=mRNA_S-dermatodea_contig10801.546.1|Name=mRNA_S-dermatodea_contig10801.546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2630bp|location=Sequence derived from alignment at S-dermatodea_contig10801:3267..5896- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGGTGCACCACGCAGCCCGTCTACGGCCCCTTGCCGGAAGGGGACTC
CGACAAGTTTTGCGCTCGGTACTGCGCCGCACACAAAAATCCCGGCATGG
TGAGCCAGAAAAGGGCGAGGTGTACGACGAACCGATGCTACCGACGGGCC
TCTTACGGGCTCCCTGGAGAGGACGGTAAATTTTGCATCGAGCACAAGGC
GAGTCGAGTGGGTGTGGCATTCGTTTTTGTTTTTGTTTTTGGACAGGCAA
CGGGGCACTGGAGGTGGGGGGCGTAGTCATGCTTTGCATGCCTCAGCTGT
GCTGTTAAGACCATTGACCACGCGTCTGTCCTCGAGAGGGCGGAGGGAGC
ATTGTTCTCCCAGGATCGATCGATCTATCGCCGATGGCCAATCGTTCCTT
CCTACTCTGCCAAAGGTGGCGCAAATGTGTTTTTCCTATCCTGTCTATAG
TACTTGTCGCCTTCTCAGGCCACTTACTATCTCCCAGTATAGCTACCGCC
TTCGTGTGGCTGCCCCATGCTTCAAAAGTCCCTCTGTCACAGCCTTCATT
TTTTCTAGCTTAGCCATGTACGCTTGGGGGGGTAATTGGGGTTCATACAT
ACCCATATATATCATTTGAAGCCAGAGTGTCACCTGCAGACAGGGAAAGT
CCCACGGGGGAATATTAGGGTTCACACATACCCACTGGTCGTTTTAGAGC
CATGTTGTCACCTACAGACAGAGAAAATCCCACAACGTTTTGTTTGTAGC
AGCATACGTCAAACGTACAACATAAACCTTCAGACGGGTAGCCTGGACAA
ATTTCTCCTCCCTGCAATAAATGATGGGACCCCCACCTCTCGCTCTATGT
TTTGAAATAAAATATTGTTTCAGGGGGCGGGGCGAAAAAGAGTTTGGCCC
CAACGCTCGCTTGGCGTTTTTGAAAGCGATTGTTGTATATTATCAGGATG
GGAGGGGGGGGGGAGAGGGGGGGGGGAGTGGTAACATTTATACGATGACC
CCACAGCACCATACATAGCGTAGACCTCCACTGAGTGCTGTAGGTAGCTT
GGGCCATCTTTTCCACTACAAAATTGTTGGACCCCAACGTTCGCTGTGTG
TCTTTTAACTACTAGTAGGTAGCGGCGACTACACCCCTGAGGCGAAAGCC
TCTACCCTTTTCAACTCATCGCAAACATAACACAAACATCAAGTTGTTTG
GCCTCAAAGTCGTATACCTGGTAGGAGTTTAGTGTACAAAATCGGCCTCA
AAATCGTATAGGAAATAGTATTGAAAAAGAGGTATTAATTGATAGAAAGA
TTTGGTTGTTTCGGGGGGCTGGAGTGGCGCCATCGTTGTCGCCGGCGTCC
CCATCGCTCGCGCCTCGTGCTCGGGGAGGCGATGAATGCGCTAGGGTAAG
TAAGCGTGCGACTGTCCAGGTTTTGTGTGTGGGTGGCGTCGTGCCGGTAT
AGCTGTTCTGCTTGGAGGGCGGCACGGGGTTTCGATGGCAGGTAGGCTGT
GTTCGCGCGCTGCAGACGCTGCAGACGGGTATGCCGTCATTGCTTTTGTT
CGACGTTACCGCCGCCAATCCAGCTCAGTCCAGTCCGGTCCAGTCCAGTC
CAGTCCCGCGCGGCGTTTAATGGGCACCAACCGATCTTAGTTGCCTGGCT
CGGCTCTTTGTAGTAACGCCGGGCGCGGTCCGAAGCGTAGTAAATTGGTA
AATATCGCGGCGTCTTTGCTCGGTACAGCTAGCCTTACGGCTGCACATGG
AATTGATGGACCTCGACGATAGCATGCTTTGCTGCCACCGGGACGCGAGG
TCAGACTTCGTTTCTTGATGGTGGGCCGCTCCGGCGTTGTTCTGGGTTCC
AGTGTTGACGCGCGGGGTCGGAGGGCGGTCGGTTACCGATTCGGCGTGTG
TGTGGGTTGTTGCGGCTCTTTCCGTATGTGCGTGTGGGCAAGGTTTATCA
TTCGCTGTGGAGCATGTGATATGAGGTGCCATCTCCGTTTGTGTTTCGGT
AGGTGTGTTTGTGTGAGCGGGGGGGTCACACGCGACTGGCCGGCCTTATC
TGAGTCCGCTTTGTGGTAAGGAGGGGTCGATCATCCCATCTCTCCCAGGT
GCTTGCCTTGGATGCCTGTCGCGGGTTGGGTTCGTCACTCCCGCAAGCTT
GCCAGTTTCTCGTTTTTTGTTTTCTTGCTTACCCACGCTCCCGCGTTTCC
CGCGGCAGAGAAGAAAGAGCAAAGTACCATCTCATTTTGATAGGTTATTA
CATTTTCTCTGGTGGGAACTGAACCCACGGCTTCCACCTCACAGCGATGT
TGGTGTCACAAGCTGAACCACTGTACTCGTGTCTCATGGCTTCCTGGAAC
ACCTTGGTATTCTCTACCCCCCCAAACCGCCCTCAACCCCCCCCCCCTCC
ACCCGCCCCACCCTCCGCTCCCCTCCCGTCCGCCTGCATGTCCGGGTATC
GTGCGATCACGTGACCTCAAATCTACAACACGGACGCCGTCACGGCCCAC
CGGCACCGCCGCAACAGCTGGAGGGCATGGTGAAAATGACCCAGGTGCAG
CGGATACGCCGACCCACCGTGCCCCACAGCACCCCCGCGAACGAGCTGCC
CGGCTCTCAGCACCCTGCCAGAGGAACACA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10801:3267..5896-

>mRNA_S-dermatodea_contig10801.546.1 ID=mRNA_S-dermatodea_contig10801.546.1|Name=mRNA_S-dermatodea_contig10801.546.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig10801:3267..5896- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGGTGCACCACGCAGCCCGTCTACGGCCCCTTGCCGGAAGGGGACTC
CGACAAGTTTTGCGCTCGGTACTGCGCCGCACACAAAAATCCCGGCATGG
TGAGCCAGAAAAGGGCGAGGTGTACGACGAACCGATGCTACCGACGGGCC
TCTTACGGGCTCCCTGGAGAGGACGGTAAATTTTGCATCGAGCACAAGCC
CCGGTGCACCACGCAGCCCGTCTACGGCCCCTTGCCGGAAGGGGACTCCG
ACAAGTTTTGCGCTCGGTACTGCGCCGCACACAAAAATCCCGGCATGGTG
AGCCAGAAAAGGGCGAGGTGTACGACGAACCGATGCTACCGACGGGCCTC
TTACGGGCTCCCTGGAGAGGACGGTAAATTTTGCATCGAGCACAAGCTGG
AGGGCATGGTGAAAATGACCCAGGTGCAGCGGATACGCCGACCCACCGTG
CCCCACAGCACCCCCGCGAACGAGCTGCCCGGCTCTCAGCACCCTGCCAG
AGGAACACTGGAGGGCATGGTGAAAATGACCCAGGTGCAGCGGATACGCC
GACCCACCGTGCCCCACAGCACCCCCGCGAACGAGCTGCCCGGCTCTCAG
CACCCTGCCAGAGGAACA
back to top