mRNA_S-dermatodea_contig10801.545.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10801.545.1
Unique NamemRNA_S-dermatodea_contig10801.545.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10801.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10801contigS-dermatodea_contig10801:2537..2965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size429
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.7869003-UTR-S-dermatodea_contig10801:2536..26531622924174.7869003-UTR-S-dermatodea_contig10801:2536..2653Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10801 2537..2653 +
1694079069.0858274-UTR-S-dermatodea_contig10801:2536..26531694079069.0858274-UTR-S-dermatodea_contig10801:2536..2653Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10801 2537..2653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.8018045-CDS-S-dermatodea_contig10801:2653..29651622924174.8018045-CDS-S-dermatodea_contig10801:2653..2965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10801 2654..2965 +
1694079069.0952466-CDS-S-dermatodea_contig10801:2653..29651694079069.0952466-CDS-S-dermatodea_contig10801:2653..2965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10801 2654..2965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10801.545.1prot_S-dermatodea_contig10801.545.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10801 2654..2965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10801.545.1

>prot_S-dermatodea_contig10801.545.1 ID=prot_S-dermatodea_contig10801.545.1|Name=mRNA_S-dermatodea_contig10801.545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MVRDRLPHLPVLRLRVCKQRIAQGRRVPRLLLQQVRRGRRRLKPPQRQPP
STGGSSTSPPAAVGGSSVIVVFGVLLFVGPIALPVPVPVTITVAAPFRAS
DPIY
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mRNA from alignment at S-dermatodea_contig10801:2537..2965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10801.545.1 ID=mRNA_S-dermatodea_contig10801.545.1|Name=mRNA_S-dermatodea_contig10801.545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=429bp|location=Sequence derived from alignment at S-dermatodea_contig10801:2537..2965+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGAAGTGTCCATGGTGATGAGACAACGGCGATGGCAGCCCGTCAGAGC
CCCCACCGGCCACGGGAAGCCCGCCGACCCCACTTGGGGACGACAGCCGT
CCAGGTCGGGGTAGCTGATGGTCCGGGATCGGCTACCGCACCTGCCCGTG
CTGAGACTGCGGGTGTGTAAGCAACGAATCGCGCAAGGACGCAGGGTGCC
TCGGTTGCTGTTGCAGCAAGTGCGGCGGGGGAGGAGAAGACTGAAGCCGC
CCCAGCGCCAGCCCCCCTCCACCGGCGGTAGCTCCACTTCCCCTCCGGCT
GCCGTAGGCGGATCCTCGGTCATCGTCGTCTTCGGTGTCCTCCTCTTCGT
TGGCCCCATCGCGCTTCCCGTTCCCGTTCCCGTTACCATTACAGTTGCCG
CTCCCTTCCGCGCCAGCGATCCCATCTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10801:2537..2965+

>mRNA_S-dermatodea_contig10801.545.1 ID=mRNA_S-dermatodea_contig10801.545.1|Name=mRNA_S-dermatodea_contig10801.545.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig10801:2537..2965+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCCGGGATCGGCTACCGCACCTGCCCGTGCTGAGACTGCGGGTGTG
TAAGCAACGAATCGCGCAAGGACGCAGGGTGCCTCGGTTGCTGTTGCAGC
AAGTGCGGCGGGGGAGGAGAAGACTGAAGCCGCCCCAGCGCCAGCCCCCC
TCCACCGGCGGTAGCTCCACTTCCCCTCCGGCTGCCGTAGGCGGATCCTC
GGTCATCGTCGTCTTCGGTGTCCTCCTCTTCGTTGGCCCCATCGCGCTTC
CCGTTCCCGTTCCCGTTACCATTACAGTTGCCGCTCCCTTCCGCGCCAGC
GATCCCATCTACATGGTCCGGGATCGGCTACCGCACCTGCCCGTGCTGAG
ACTGCGGGTGTGTAAGCAACGAATCGCGCAAGGACGCAGGGTGCCTCGGT
TGCTGTTGCAGCAAGTGCGGCGGGGGAGGAGAAGACTGAAGCCGCCCCAG
CGCCAGCCCCCCTCCACCGGCGGTAGCTCCACTTCCCCTCCGGCTGCCGT
AGGCGGATCCTCGGTCATCGTCGTCTTCGGTGTCCTCCTCTTCGTTGGCC
CCATCGCGCTTCCCGTTCCCGTTCCCGTTACCATTACAGTTGCCGCTCCC
TTCCGCGCCAGCGATCCCATCTAC
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